From 5ae2e106ab92eb84228697775e62913d3efa1742 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Fri, 20 Feb 2026 17:27:30 +0000 Subject: [PATCH 01/19] added conanfile --- CMake/{FindVTK.cmake => FindVTK.cmake.bak} | 0 CMakeLists.txt | 4 +++- CMakeUserPresets.json | 9 +++++++++ conanfile.txt | 7 +++++++ src/Math/CMakeLists.txt | 2 +- src/Vtk/CMakeLists.txt | 2 +- src/Vtk/uLibVtkInterface.cxx | 2 +- src/Vtk/vtkMuonScatter.h | 2 +- src/Vtk/vtkVoxImage.h | 10 +++++----- 9 files changed, 28 insertions(+), 10 deletions(-) rename CMake/{FindVTK.cmake => FindVTK.cmake.bak} (100%) create mode 100644 CMakeUserPresets.json create mode 100644 conanfile.txt diff --git a/CMake/FindVTK.cmake b/CMake/FindVTK.cmake.bak similarity index 100% rename from CMake/FindVTK.cmake rename to CMake/FindVTK.cmake.bak diff --git a/CMakeLists.txt b/CMakeLists.txt index 36e686c..cb64190 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -84,11 +84,13 @@ enable_testing() set(Boost_USE_STATIC_LIBS OFF) set(Boost_USE_MULTITHREADED ON) set(Boost_USE_STATIC_RUNTIME OFF) +message(STATUS "CMAKE_PREFIX_PATH is ${CMAKE_PREFIX_PATH}") find_package(Boost 1.45.0 COMPONENTS program_options REQUIRED) include_directories(${Boost_INCLUDE_DIRS}) find_package(Eigen3 CONFIG REQUIRED) -include(${EIGEN3_USE_FILE}) +get_target_property(EIGEN3_INCLUDE_DIRS Eigen3::Eigen INTERFACE_INCLUDE_DIRECTORIES) +include_directories(${EIGEN3_INCLUDE_DIRS}) find_package(ROOT CONFIG REQUIRED) include(${ROOT_USE_FILE}) diff --git a/CMakeUserPresets.json b/CMakeUserPresets.json new file mode 100644 index 0000000..945b382 --- /dev/null +++ b/CMakeUserPresets.json @@ -0,0 +1,9 @@ +{ + "version": 4, + "vendor": { + "conan": {} + }, + "include": [ + "build/CMakePresets.json" + ] +} \ No newline at end of file diff --git a/conanfile.txt b/conanfile.txt new file mode 100644 index 0000000..f8fb77a --- /dev/null +++ b/conanfile.txt @@ -0,0 +1,7 @@ +[requires] +eigen/3.4.0 +boost/1.83.0 + +[generators] +CMakeDeps +CMakeToolchain diff --git a/src/Math/CMakeLists.txt b/src/Math/CMakeLists.txt index 51e4492..9aec9ee 100644 --- a/src/Math/CMakeLists.txt +++ b/src/Math/CMakeLists.txt @@ -32,7 +32,7 @@ set(SOURCES VoxRaytracer.cpp Structured2DGrid.cpp Structured4DGrid.cpp) -set(LIBRARIES ${Eigen_LIBRARY} +set(LIBRARIES Eigen3::Eigen ${ROOT_LIBRARIES} ${VTK_LIBRARIES}) diff --git a/src/Vtk/CMakeLists.txt b/src/Vtk/CMakeLists.txt index 33b5585..9b8351b 100644 --- a/src/Vtk/CMakeLists.txt +++ b/src/Vtk/CMakeLists.txt @@ -14,7 +14,7 @@ set(SOURCES uLibVtkInterface.cxx vtkVoxRaytracerRepresentation.cpp vtkVoxImage.cpp) -set(LIBRARIES ${Eigen_LIBRARY} +set(LIBRARIES Eigen3::Eigen ${ROOT_LIBRARIES} ${VTK_LIBRARIES} ${PACKAGE_LIBPREFIX}Math) diff --git a/src/Vtk/uLibVtkInterface.cxx b/src/Vtk/uLibVtkInterface.cxx index 15a06a6..47ca752 100644 --- a/src/Vtk/uLibVtkInterface.cxx +++ b/src/Vtk/uLibVtkInterface.cxx @@ -37,7 +37,7 @@ #endif -#include +#include #include #include #include diff --git a/src/Vtk/vtkMuonScatter.h b/src/Vtk/vtkMuonScatter.h index 77a3a94..90b0c39 100644 --- a/src/Vtk/vtkMuonScatter.h +++ b/src/Vtk/vtkMuonScatter.h @@ -28,7 +28,7 @@ #ifndef VTKMUONSCATTER_H #define VTKMUONSCATTER_H -#include +#include #include #include #include diff --git a/src/Vtk/vtkVoxImage.h b/src/Vtk/vtkVoxImage.h index 442efe7..f94a334 100644 --- a/src/Vtk/vtkVoxImage.h +++ b/src/Vtk/vtkVoxImage.h @@ -28,11 +28,11 @@ #ifndef U_VTKVOXIMAGE_H #define U_VTKVOXIMAGE_H -#include "vtk/vtkVolume.h" -#include "vtk/vtkImageData.h" -#include "vtk/vtkXMLImageDataReader.h" -#include "vtk/vtkXMLImageDataWriter.h" -#include "vtk/vtkCubeSource.h" +#include +#include +#include +#include +#include #include From 8566ceb662f6c40c18163afe92a08ff96936153c Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Fri, 20 Feb 2026 18:05:40 +0000 Subject: [PATCH 02/19] feat: add `condaenv.yml` for environment setup and update `README.md` with detailed build instructions. --- README.md | 54 ++++++++++++++++++++++++++++++++++++++++++++++++++++ condaenv.yml | 10 ++++++++++ 2 files changed, 64 insertions(+) create mode 100644 condaenv.yml diff --git a/README.md b/README.md index 21d5e25..7ebab60 100644 --- a/README.md +++ b/README.md @@ -7,3 +7,57 @@ base toolkit library CMT Cosmic Muon Tomography reconstruction, analysis and imaging software Developed by University of Padova and INFN Sezione di Padova Italy +## Build Instructions + +This project relies on `conan` (v2) for dependency management (Eigen3, Boost) and `cmake` for configuration. VTK is provided through the micromamba/conda-forge environment. + +### Prerequisites + +This project requires a `conda` or `micromamba` environment containing the necessary global tools like **ROOT**, **VTK**, and **Conan** (v2). We provide a `condaenv.yml` file to quickly build this environment. + +#### Installing Micromamba (Optional) + +If you do not have `conda` installed, `micromamba` is a fast and lightweight alternative. You can install it on Linux via: + +```bash +"${SHELL}" <(curl -L micro.mamba.pm/install.sh) +``` + +#### Creating the Environment + +You can create and activate the environment using either `micromamba` or `conda`. + +**Using Micromamba:** +```bash +micromamba env create -f condaenv.yml +micromamba activate mutom +``` + +**Using Conda:** +```bash +conda env create -f condaenv.yml +conda activate mutom +``` + +### Configure and Build + +1. **Configure Conan profile (if you haven't yet on your machine):** +```bash +conan profile detect +``` + +2. **Install Conan dependencies:** +```bash +conan install . --output-folder=build --build=missing +``` + +3. **Configure the project with CMake:** +```bash +cmake --preset conan-release +``` +*(Alternatively: `cd build && cmake .. -DCMAKE_TOOLCHAIN_FILE=conan_toolchain.cmake -DCMAKE_BUILD_TYPE=Release`)* + +4. **Build the project:** +```bash +cmake --build build -j10 +``` diff --git a/condaenv.yml b/condaenv.yml new file mode 100644 index 0000000..8ec18fe --- /dev/null +++ b/condaenv.yml @@ -0,0 +1,10 @@ +name: mutom +channels: + - conda-forge +dependencies: + - compiler-rt + - make + - cmake + - conan + - root + - vtk From c04722c2bbe0a6ae9707eeda741fe75f02a8e6db Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Sat, 21 Feb 2026 10:45:25 +0000 Subject: [PATCH 03/19] refactor: reformat type introspection code and remove ObjectProps system. --- .gitignore | 2 +- .vscode/settings.json | 8 + CMakeLists.txt | 2 +- build.log | 36 ++ src/Core/Makefile.am | 1 - src/Core/Object.cpp | 198 ++++----- src/Core/Object.h | 263 ++++++------ src/Core/ObjectProps.h | 278 ------------- src/Core/Serializable.h | 511 ++++++++++++------------ src/Core/Types.h | 279 +++++-------- src/Core/testing/CMakeLists.txt | 1 - src/Core/testing/Makefile.am | 1 - src/Core/testing/ObjectPropableTest.cpp | 237 ----------- src/Math/Dense.h | 216 +++++----- src/Math/VoxRaytracer.cpp | 342 ++++++++-------- src/Root/Linkdef.h | 53 +-- uLib.files | 2 - 17 files changed, 878 insertions(+), 1552 deletions(-) create mode 100644 .vscode/settings.json create mode 100644 build.log delete mode 100644 src/Core/ObjectProps.h delete mode 100644 src/Core/testing/ObjectPropableTest.cpp diff --git a/.gitignore b/.gitignore index ebf7767..4156b34 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,3 @@ CMakeFiles/ build/ - +.cache/ diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..60a2f7a --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,8 @@ +{ + "clangd.fallbackFlags": [ + "-I${workspaceFolder}/src", + "-I/home/share/micromamba/envs/mutom/include", + "-I/home/rigoni/.conan2/p/eigen5481853932f72/p/include/eigen3" + ], + "clangd.semanticHighlighting.enable": true +} \ No newline at end of file diff --git a/CMakeLists.txt b/CMakeLists.txt index cb64190..aeb4459 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -73,7 +73,7 @@ set(CMAKE_VERBOSE_MAKEFILE FALSE CACHE STRING "Verbose compile output switch") set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${CMAKE_CXX_WARNING_OPTION}") -set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -UULIB_SERIALIZATION_ON") +set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -UULIB_SERIALIZATION_ON -Wno-cpp") # CTEST framework enable_testing() diff --git a/build.log b/build.log new file mode 100644 index 0000000..1f51156 --- /dev/null +++ b/build.log @@ -0,0 +1,36 @@ +make: Entering directory '/home/rigoni/devel/cmt/ulib/build' +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/VoxImage.cpp.o +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/TriangleMesh.cpp.o +[ 30%] Building CXX object src/Core/CMakeFiles/mutomCore.dir/Options.cpp.o +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/Dense.cpp.o +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/StructuredGrid.cpp.o +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/VoxRaytracer.cpp.o +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/StructuredData.cpp.o +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/Structured2DGrid.cpp.o +[ 30%] Building CXX object src/Math/CMakeFiles/mutomMath.dir/Structured4DGrid.cpp.o +[ 33%] Linking CXX shared library libmutomCore.so +[ 33%] Built target mutomCore +[ 36%] Linking CXX shared library libmutomMath.so +[ 36%] Built target mutomMath +[ 63%] Building CXX object src/Vtk/CMakeFiles/mutomVtk.dir/vtkContainerBox.cpp.o +[ 63%] Building CXX object src/Vtk/CMakeFiles/mutomVtk.dir/uLibVtkInterface.cxx.o +[ 63%] Building CXX object src/Vtk/CMakeFiles/mutomVtk.dir/vtkStructuredGrid.cpp.o +[ 63%] Building CXX object src/Vtk/CMakeFiles/mutomVtk.dir/vtkMuonScatter.cxx.o +[ 63%] Building CXX object src/Vtk/CMakeFiles/mutomVtk.dir/uLibVtkViewer.cpp.o +[ 63%] Generating mutomRootDict.cxx, libmutomRootDict_rdict.pcm, libmutomRootDict.rootmap +[ 63%] Building CXX object src/Vtk/CMakeFiles/mutomVtk.dir/vtkVoxImage.cpp.o +[ 63%] Building CXX object src/Vtk/CMakeFiles/mutomVtk.dir/vtkVoxRaytracerRepresentation.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/muCastorSkinHit.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/muCastorHit.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/muCastorMCTrack.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/muCastorInfo.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/RootMuonScatter.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/muCastorPrimaryVertex.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/muCastorMuDetDIGI.cpp.o +[ 90%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/SkinDetectorWriter.cpp.o +[ 93%] Building CXX object src/Root/CMakeFiles/mutomRoot.dir/mutomRootDict.cxx.o +[ 96%] Linking CXX shared library libmutomVtk.so +[ 96%] Built target mutomVtk +[100%] Linking CXX shared library libmutomRoot.so +[100%] Built target mutomRoot +make: Leaving directory '/home/rigoni/devel/cmt/ulib/build' diff --git a/src/Core/Makefile.am b/src/Core/Makefile.am index 2bb1092..5e5e31f 100644 --- a/src/Core/Makefile.am +++ b/src/Core/Makefile.am @@ -14,7 +14,6 @@ library_include_HEADERS = \ Macros.h \ Mpl.h \ Object.h \ - ObjectProps.h \ Options.h \ Serializable.h \ Signal.h \ diff --git a/src/Core/Object.cpp b/src/Core/Object.cpp index 1c6d690..56ec798 100644 --- a/src/Core/Object.cpp +++ b/src/Core/Object.cpp @@ -23,178 +23,126 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - - #include "config.h" #include "Object.h" #include "Vector.h" -#include "boost/archive/polymorphic_xml_oarchive.hpp" -#include "boost/archive/polymorphic_xml_iarchive.hpp" -#include "boost/archive/polymorphic_text_oarchive.hpp" -#include "boost/archive/polymorphic_text_iarchive.hpp" -#include "boost/archive/polymorphic_binary_oarchive.hpp" #include "boost/archive/polymorphic_binary_iarchive.hpp" - - +#include "boost/archive/polymorphic_binary_oarchive.hpp" +#include "boost/archive/polymorphic_text_iarchive.hpp" +#include "boost/archive/polymorphic_text_oarchive.hpp" +#include "boost/archive/polymorphic_xml_iarchive.hpp" +#include "boost/archive/polymorphic_xml_oarchive.hpp" namespace uLib { - -const char *Version::PackageName = PACKAGE_NAME; +const char *Version::PackageName = PACKAGE_NAME; const char *Version::VersionNumber = PACKAGE_VERSION; -const char *Version::Release = "x"; //SVN_REVISION; - +const char *Version::Release = "x"; // SVN_REVISION; //////////////////////////////////////////////////////////////////////////////// // Object Private // class ObjectPrivate { public: + struct Signal { + GenericMFPtr sigptr; + std::string sigstr; + SignalBase *signal; + }; - struct Signal { - GenericMFPtr sigptr; - std::string sigstr; - SignalBase *signal; - }; + struct Slot { + GenericMFPtr sloptr; + std::string slostr; + }; - struct Slot { - GenericMFPtr sloptr; - std::string slostr; - }; - - - Vector sigv; - Vector slov; + Vector sigv; + Vector slov; }; - - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // OBJECT IMPLEMENTATION +Object::Object() : d(new ObjectPrivate) {} +Object::Object(const Object ©) : d(new ObjectPrivate(*copy.d)) {} -Object::Object() : - d(new ObjectPrivate) -{} +Object::~Object() { delete d; } -Object::Object(const Object ©) : - ObjectPropable(copy), - d(new ObjectPrivate(*copy.d)) -{} - -Object::~Object() { - delete d; +void Object::DeepCopy(const Object ©) { + // should lock to be tread safe // + memcpy(d, copy.d, sizeof(ObjectPrivate)); + // ERROR! does not copy parameters ... <<<< FIXXXXX } -void Object::DeepCopy(const Object ©) -{ - // should lock to be tread safe // - memcpy(d,copy.d,sizeof(ObjectPrivate)); - // ERROR! does not copy parameters ... <<<< FIXXXXX +void Object::SaveXml(std::ostream &os, Object &ob) { + Archive::xml_oarchive ar(os); + ar << boost::serialization::make_nvp("Object", ob); } - - - - -void Object::SaveXml(std::ostream &os, Object &ob) -{ - Archive::xml_oarchive ar(os); - ar << boost::serialization::make_nvp("Object",ob); +void Object::LoadXml(std::istream &is, Object &ob) { + Archive::xml_iarchive ar(is); + ar >> boost::serialization::make_nvp("Object", ob); } -void Object::LoadXml(std::istream &is, Object &ob) -{ - Archive::xml_iarchive ar(is); - ar >> boost::serialization::make_nvp("Object",ob); -} - - // FINIRE -void Object::SaveConfig(std::ostream &os, int version) -{ - Archive::xml_oarchive ar(os); - ObjectPropable::serialize(ar,0); +void Object::SaveConfig(std::ostream &os, int version) { + Archive::xml_oarchive ar(os); } -void Object::LoadConfig(std::istream &is, int version) -{ - if(!props()) this->init_properties(); - Archive::xml_iarchive ar(is); - ObjectPropable::serialize(ar,0); +void Object::LoadConfig(std::istream &is, int version) { + Archive::xml_iarchive ar(is); } - - - - -void Object::PrintSelf(std::ostream &o) const -{ - o << "OBJECT signals: ------------------\n"; - Vector::Iterator itr; - for(itr = d->sigv.begin(); itrsigv.end(); itr++) - { - o << " signal:[ " << itr->sigstr << " ]\n"; - } - o << "--------------------------------------\n\n"; +void Object::PrintSelf(std::ostream &o) const { + o << "OBJECT signals: ------------------\n"; + Vector::Iterator itr; + for (itr = d->sigv.begin(); itr < d->sigv.end(); itr++) { + o << " signal:[ " << itr->sigstr << " ]\n"; + } + o << "--------------------------------------\n\n"; } - -bool Object::addSignalImpl(SignalBase *sig, GenericMFPtr fptr, const char *name) -{ - ObjectPrivate::Signal s = {fptr,std::string(name),sig}; - d->sigv.push_back(s); +bool Object::addSignalImpl(SignalBase *sig, GenericMFPtr fptr, + const char *name) { + ObjectPrivate::Signal s = {fptr, std::string(name), sig}; + d->sigv.push_back(s); } -bool Object::addSlotImpl(GenericMFPtr fptr, const char *name) -{ - ObjectPrivate::Slot s = {fptr,std::string(name)}; - d->slov.push_back(s); +bool Object::addSlotImpl(GenericMFPtr fptr, const char *name) { + ObjectPrivate::Slot s = {fptr, std::string(name)}; + d->slov.push_back(s); } -SignalBase *Object::findSignalImpl(const GenericMFPtr &fptr) const -{ - for(int i=0; isigv.size(); ++i) - { - if(d->sigv[i].sigptr == fptr) - return d->sigv[i].signal; - } - return NULL; +SignalBase *Object::findSignalImpl(const GenericMFPtr &fptr) const { + for (int i = 0; i < d->sigv.size(); ++i) { + if (d->sigv[i].sigptr == fptr) + return d->sigv[i].signal; + } + return NULL; } -SignalBase *Object::findSignalImpl(const char *name) const -{ - std::string in(name); - for(int i=0; isigv.size(); ++i) - { - if(d->sigv[i].sigstr == in) - return d->sigv[i].signal; - } - return NULL; +SignalBase *Object::findSignalImpl(const char *name) const { + std::string in(name); + for (int i = 0; i < d->sigv.size(); ++i) { + if (d->sigv[i].sigstr == in) + return d->sigv[i].signal; + } + return NULL; } -GenericMFPtr *Object::findSlotImpl(const char *name) const -{ - std::string in(name); - for(int i=0; islov.size(); ++i) - { - if(d->slov[i].slostr == in) - return &d->slov[i].sloptr; - } - return NULL; +GenericMFPtr *Object::findSlotImpl(const char *name) const { + std::string in(name); + for (int i = 0; i < d->slov.size(); ++i) { + if (d->slov[i].slostr == in) + return &d->slov[i].sloptr; + } + return NULL; } - - - // std::ostream & // operator << (std::ostream &os, uLib::Object &ob) // { @@ -218,10 +166,4 @@ GenericMFPtr *Object::findSlotImpl(const char *name) const // return is; // } - - - -} // uLib - - - +} // namespace uLib diff --git a/src/Core/Object.h b/src/Core/Object.h index 9a61e7b..5d1b51e 100644 --- a/src/Core/Object.h +++ b/src/Core/Object.h @@ -23,200 +23,183 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_CORE_OBJECT_H #define U_CORE_OBJECT_H #include // WARNING: COPILE ERROR if this goes after mpl/vector // -//#include "Core/Vector.h" +// #include "Core/Vector.h" -#include "Core/Types.h" #include "Core/Debug.h" +#include "Core/Types.h" #include "Core/Function.h" #include "Core/Signal.h" #include "Core/Mpl.h" #include "Core/Serializable.h" -#include "Core/ObjectProps.h" #include "Core/Uuid.h" namespace boost { namespace archive { class polymorphic_iarchive; class polymorphic_oarchive; -} // archive -} // boost - +} // namespace archive +} // namespace boost namespace uLib { - class Version { public: - static const char *PackageName; - static const char *VersionNumber; - static const char *Release; + static const char *PackageName; + static const char *VersionNumber; + static const char *Release; }; - - - - - //////////////////////////////////////////////////////////////////////////////// //// OBJECT //////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// - - /** * @brief Object class is the object base implementation for uLib Framework. */ -class Object : public ObjectPropable -{ - +class Object { public: - // std::string name; - // void PrintName() { std::cout << "Ob name: " << name << "\n"; } + // std::string name; + // void PrintName() { std::cout << "Ob name: " << name << "\n"; } - Object(); - Object(const Object ©); - ~Object(); + Object(); + Object(const Object ©); + ~Object(); - //////////////////////////////////////////////////////////////////////////// - // PARAMETERS // + //////////////////////////////////////////////////////////////////////////// + // PARAMETERS // - // FIXX !!! - virtual void DeepCopy(const Object ©); + // FIXX !!! + virtual void DeepCopy(const Object ©); + //////////////////////////////////////////////////////////////////////////// + // SERIALIZATION // - //////////////////////////////////////////////////////////////////////////// - // SERIALIZATION // + template + void serialize(ArchiveT &ar, const unsigned int version) {} + template + void save_override(ArchiveT &ar, const unsigned int version) {} - template void serialize(ArchiveT &ar, const unsigned int version) { - ObjectPropable::serialize(ar,version); + void SaveConfig(std::ostream &os, int version = 0); + void LoadConfig(std::istream &is, int version = 0); + + static void SaveXml(std::ostream &os, Object &ob); + static void LoadXml(std::istream &is, Object &ob); + + //////////////////////////////////////////////////////////////////////////// + // SIGNALS // + + // Qt4 style connector // + static bool connect(const Object *ob1, const char *signal_name, + const Object *receiver, const char *slot_name) { + // // NOT WORKING YET // + // 1) find slot pointer from name + // SignalBase *sig = ob1->findSignal(signal_name); + // GenericMFPtr *slo = receiver->findSlot(slot_name); + // if(sig && slo) + // return Object::connect(sig,slo->operator ()(),receiver); + // else return false; + } + + // Qt5 style connector // + template + static bool + connect(typename FunctionPointer::Object *sender, Func1 sigf, + typename FunctionPointer::Object *receiver, Func2 slof) { + SignalBase *sigb = sender->findOrAddSignal(sigf); + typedef boost::signals2::signal< + typename FunctionPointer::SignalSignature> + SigT; + ConnectSignal(sigb, slof, receiver); + } + + template + static inline bool connect(SignalBase *sigb, FuncT slof, Object *receiver) { + ConnectSignal(sigb, slof, receiver); + } + + template + inline + typename Signal::SignalSignature>::type * + addSignal(FuncT fun, const char *name) { + typedef + typename Signal::SignalSignature>::type + SigT; + SignalBase *sig = NewSignal(fun); + addSignalImpl(sig, fun, name); + return (SigT *)sig; + } + + template inline bool addSlot(FuncT fun, const char *name) { + this->addSlotImpl(GenericMFPtr(fun), name); + } + + template + inline + typename Signal::SignalSignature>::type * + findSignal(FuncT fptr) { + typedef + typename Signal::SignalSignature>::type + SigT; + return (SigT *)findSignalImpl(GenericMFPtr(fptr)); + } + + template + inline + typename Signal::SignalSignature>::type * + findOrAddSignal(FuncT fptr) { + typedef + typename Signal::SignalSignature>::type + SigT; + SignalBase *sig = findSignalImpl(GenericMFPtr(fptr)); + if (!sig) { + sig = NewSignal(fptr); + addSignalImpl(sig, fptr, "signal_name_to_be_implemented"); } - template void save_override(ArchiveT &ar,const unsigned int version) {} + return (SigT *)sig; + } - void SaveConfig(std::ostream &os, int version = 0); - void LoadConfig(std::istream &is, int version = 0); + inline SignalBase *findSignal(const char *name) const { + return findSignalImpl(name); + } - static void SaveXml(std::ostream &os, Object &ob); - static void LoadXml(std::istream &is, Object &ob); + inline GenericMFPtr *findSlot(const char *name) const { + return findSlotImpl(name); + } + void PrintSelf(std::ostream &o) const; - - //////////////////////////////////////////////////////////////////////////// - // SIGNALS // - - // Qt4 style connector // - static bool connect(const Object *ob1, const char *signal_name, const Object *receiver, const char *slot_name) { - // // NOT WORKING YET // - // 1) find slot pointer from name - // SignalBase *sig = ob1->findSignal(signal_name); - // GenericMFPtr *slo = receiver->findSlot(slot_name); - // if(sig && slo) - // return Object::connect(sig,slo->operator ()(),receiver); - // else return false; - } - - // Qt5 style connector // - template - static bool connect( typename FunctionPointer::Object *sender, Func1 sigf, - typename FunctionPointer::Object *receiver, Func2 slof) - { - SignalBase *sigb = sender->findOrAddSignal(sigf); - typedef boost::signals2::signal::SignalSignature> SigT; - ConnectSignal(sigb,slof,receiver); - } - - template - static inline bool connect(SignalBase *sigb, FuncT slof, Object *receiver) { - ConnectSignal(sigb,slof,receiver); - } - - - template< typename FuncT > - inline typename Signal::SignalSignature>::type * - addSignal(FuncT fun, const char *name) { - typedef typename Signal::SignalSignature>::type SigT; - SignalBase *sig = NewSignal(fun); - addSignalImpl(sig,fun,name); - return (SigT *)sig; - } - - template< typename FuncT> - inline bool addSlot(FuncT fun, const char *name) { - this->addSlotImpl(GenericMFPtr(fun),name); - } - - template < typename FuncT > - inline typename Signal::SignalSignature>::type * - findSignal(FuncT fptr) - { - typedef typename Signal::SignalSignature>::type SigT; - return (SigT *)findSignalImpl(GenericMFPtr(fptr)); - } - - template < typename FuncT > - inline typename Signal::SignalSignature>::type * - findOrAddSignal(FuncT fptr) - { - typedef typename Signal::SignalSignature>::type SigT; - SignalBase *sig = findSignalImpl(GenericMFPtr(fptr)); - if(!sig) { - sig = NewSignal(fptr); - addSignalImpl(sig,fptr,"signal_name_to_be_implemented"); - } - return (SigT *)sig; - } - - - inline SignalBase * - findSignal(const char *name) const - { - return findSignalImpl(name); - } - - inline GenericMFPtr * - findSlot(const char *name) const - { - return findSlotImpl(name); - } - - - void PrintSelf(std::ostream &o) const; - - inline const Object& operator = (const Object ©) - { this->DeepCopy(copy); return *this; } - + inline const Object &operator=(const Object ©) { + this->DeepCopy(copy); + return *this; + } private: - bool addSignalImpl(SignalBase *sig, GenericMFPtr fptr, const char *name); - bool addSlotImpl(GenericMFPtr fptr, const char *name); - SignalBase *findSignalImpl(const GenericMFPtr &fptr) const; - SignalBase *findSignalImpl(const char *name) const; - GenericMFPtr *findSlotImpl(const char *name) const; + bool addSignalImpl(SignalBase *sig, GenericMFPtr fptr, const char *name); + bool addSlotImpl(GenericMFPtr fptr, const char *name); + SignalBase *findSignalImpl(const GenericMFPtr &fptr) const; + SignalBase *findSignalImpl(const char *name) const; + GenericMFPtr *findSlotImpl(const char *name) const; - friend class boost::serialization::access; - friend class ObjectPrivate; - class ObjectPrivate *d; + friend class boost::serialization::access; + friend class ObjectPrivate; + class ObjectPrivate *d; }; - - -} // uLib +} // namespace uLib //////////////////////////////////////////////////////////////////////////////// -//std::ostream & operator << (std::ostream &os, uLib::Object &ob); -//std::ostream & operator << (std::ostream &os, uLib::Object *ob); -//std::istream & operator >> (std::istream &is, uLib::Object &ob); - +// std::ostream & operator << (std::ostream &os, uLib::Object &ob); +// std::ostream & operator << (std::ostream &os, uLib::Object *ob); +// std::istream & operator >> (std::istream &is, uLib::Object &ob); #endif // U_OBJECT_H diff --git a/src/Core/ObjectProps.h b/src/Core/ObjectProps.h deleted file mode 100644 index b789d84..0000000 --- a/src/Core/ObjectProps.h +++ /dev/null @@ -1,278 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#ifndef U_OBJECTPROPS_H -#define U_OBJECTPROPS_H - - - -#include - -#include -#include - - - -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -// MACROS // - - -#define ULIB_props() \ - public: struct ObjectProps; \ - virtual void init_properties(); \ - inline struct ObjectProps &p() { /* static const unsigned int offset = props_offset(this); */ \ - /* NON FUNZIA! return * (struct ObjectProps *)(reinterpret_cast(props())+offset); */ \ - return *props()->ptr(); } \ - typedef uLib::mpl::bool_::type propable_trait; \ - public: struct DLL_PUBLIC ObjectProps - -#define properties() ULIB_props() - -#define default(vlaue) - -#define $$ p() - -#define $(_name) props_ref<_name>() - -#define $_init() \ - if(props(this)) return; \ - props_new(this); \ - uLib::detail::ObjectProps::initializer::init_object_baselist(this); - - - -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - -namespace boost { -namespace serialization { -class access; -} -} - - -namespace uLib { - -namespace detail { - -struct ObjectProps { - - /** Define a trait has_member to find if an Object is Propable*/ - BOOST_MPL_HAS_XXX_TRAIT_DEF(propable_trait) - - /** IsA ProbapleObject Implementation Template */ - template - struct IsA : has_propable_trait {}; - - /** Lambda to get Props member type */ - template - struct props_type { - typedef typename T::ObjectProps type; - }; - - template - struct get_props { - - /** CFList has result but this method check for has BaseList */ - typedef typename detail::TypeIntrospection::child_first::type CFTypeList; - - /** Filter List items that have not Propable feature */ - typedef typename mpl::filter_view< CFTypeList, IsA >::type FilteredCFTypeList; - - /** Get Props from each Parent in Seq */ - typedef typename mpl::transform_view< FilteredCFTypeList, props_type >::type type; - - - // qui sotto ho un problema che ho temporaneamente tamponato // - // ovvero ho usato child_first_impl per ottenere la lista delle basi // - // vorrei farlo facendo un pop_back ma non va forse perche il tipo // - // non e' corretto. // - - /** Get Parent list from CFTypeList */ - typedef typename detail::TypeIntrospection::child_first_impl::Childs CFBaseList; - - /** Filter Parents that have not Propable feature */ - typedef typename mpl::filter_view< CFBaseList, IsA >::type FilteredCFBaseList; - }; - - - - // TODO: convert to pp const value, - // (non so se sia possibile con il dinamic casting intanto funziona cosi' ) - template - static unsigned int measure_offset(T1 base, T2 derived) { - return reinterpret_cast(derived) - reinterpret_cast(base); - } - - struct initializer { - - template - struct lambda_init_object { - _ObjectT *o; - lambda_init_object(_ObjectT *o) : o(o) {} - template void operator()(T) { - o->T::init_properties(); - } - }; - - - /** - * This calls the internal init_properties() virtual function for each - * object parent defined in BaseList only if it is propable - */ - template - static void init_object_baselist(T *o) { - typedef typename uLib::detail::ObjectProps::get_props::FilteredCFBaseList CFBaseList; - mpl::for_each(lambda_init_object(o)); - } - - /** - * This calls the internal init_properties() virtual function only if - * object is propable ( implementation if not propable ) - */ - template - static - typename boost::enable_if >,void>::type - init_object(T *o) { - ; // do nothing // - } - - /** - * This calls the internal init_properties() virtual function only if - * object is propable ( implementation if propable ) - */ - template - static - typename boost::enable_if,void>::type - init_object(T *o) { - o->init_properties(); - } - - }; - - template - struct serialize_baselist { - ThisClass & m_object; - Archive & m_ar; - serialize_baselist(ThisClass &o, Archive &ar) : m_object(o), m_ar(ar) {} - template void operator()(T &o) { - // T is taken fron get_props::FilteredPList types to get - // type_info_name that is the type name defined by Type macro - typedef typename props_type::type PType; - std::string name(TypeIntrospection::access::type_info::name); - boost::algorithm::replace_all(name,"::","_"); - m_ar & boost::serialization::make_nvp( - name.c_str() , - boost::serialization::base_object(m_object)); - } - }; - -}; - -} // detail - - - - - -struct ObjectPropsBase { - virtual ~ObjectPropsBase() {} - virtual ObjectPropsBase *copy() = 0; - - template inline T *ptr() { return dynamic_cast(this); } - - template void serialize(ArchiveT &ar, const unsigned int version) {} -}; - - - -template -struct ObjectPropsImpl : - ObjectPropsBase, - ULIB_MPL_INHERIT_NOFOLD_SEQ(typename uLib::detail::ObjectProps::get_props::type) -{ - typedef ObjectPropsImpl ThisClass; - typedef typename uLib::detail::ObjectProps::get_props::type CFList; - typedef typename uLib::detail::ObjectProps::get_props::FilteredCFTypeList FilteredCFTypeList; - ObjectPropsBase *copy() { return new ThisClass(*this); } - - template void serialize(ArchiveT &ar, const unsigned int version) { - boost::serialization::void_cast_register(); - mpl::for_each(detail::ObjectProps::serialize_baselist(*this,ar)); - } -}; - - -class ObjectPropable { - - ObjectPropsBase *m_props; - friend class uLib::detail::ObjectProps; - friend class boost::serialization::access; -public: - ObjectPropable() : m_props(NULL) {} - ObjectPropable(const ObjectPropable &c) { if(c.m_props) m_props = c.m_props->copy(); else m_props = NULL; } - ~ObjectPropable() { if(m_props) delete m_props; } - - - template inline typename T::ObjectProps& props_ref() const { if(m_props) return *m_props->ptr(); else exit(1); } - template inline typename T::ObjectProps* props(T *ptr = NULL) const { if(m_props) return m_props->ptr(); else return NULL; } -protected: - ObjectPropsBase *props() const { return m_props; } - template inline void props_new(T* ptr = NULL) { if(!m_props) m_props = new ObjectPropsImpl; } - - /** NOT working dynamic cache casting */ - template inline unsigned int props_offset(T *ptr) const - { if(m_props) return detail::ObjectProps::measure_offset(m_props,m_props->ptr()); else return -1; } - - - template void serialize(ArchiveT &ar, const unsigned int version) { - if(m_props) ar & boost::serialization::make_nvp("properties",m_props); - } - -public: - /** - * ObjectPropable is not directly propable itself to prevent Basclass - * duplication in inherit_nofold. And for the same reason ANY VIRTUAL BASE - * SHOULD NOT BE PROPABLE - */ - virtual void init_properties() {} - -}; - -} // uLib - - - - - - - -#endif // U_OBJECTPROPS_H diff --git a/src/Core/Serializable.h b/src/Core/Serializable.h index 85221ce..ea2c376 100644 --- a/src/Core/Serializable.h +++ b/src/Core/Serializable.h @@ -23,8 +23,6 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_SERIALIZABLE_H #define U_SERIALIZABLE_H @@ -38,9 +36,6 @@ TODO: */ - - - #include #include @@ -48,26 +43,22 @@ TODO: #include #include -//#include -//#include -//#include -//#include -//#include "boost/archive/polymorphic_iarchive.hpp" -//#include "boost/archive/polymorphic_oarchive.hpp" +// #include +// #include +// #include +// #include +// #include "boost/archive/polymorphic_iarchive.hpp" +// #include "boost/archive/polymorphic_oarchive.hpp" -#include -#include -#include #include +#include +#include +#include #include - -#include "Core/Mpl.h" -#include "Core/ObjectProps.h" #include "Core/Archives.h" #include "Core/Export.h" - - +#include "Core/Mpl.h" //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -80,63 +71,47 @@ namespace serialization { // ACCESS 2 // template struct access2 {}; - // NON FUNZIONA ... SISTEMARE !!!! // ------------------------------------------ -template -class hrp : - public wrapper_traits > -{ - const char *m_name; - T *m_value; - std::string *m_str; +template class hrp : public wrapper_traits> { + const char *m_name; + T *m_value; + std::string *m_str; public: - explicit hrp(const char * name_, T &t) : - m_str(new std::string), - m_name(name_), m_value(&t) {} + explicit hrp(const char *name_, T &t) + : m_str(new std::string), m_name(name_), m_value(&t) {} - const char * name() const { - return this->m_name; - } + const char *name() const { return this->m_name; } - - template - void save( Archivex & ar, const unsigned int /* file_version */) const { - //// ar.operator<<(const_value()); - // std::stringstream ss; - // uLib::Archive::hrt_oarchive har(ss); - // har << make_nvp(m_name,*m_value); - // // (*m_str) = ss.str(); - //// ar.operator << (make_nvp(m_name, ss.str()); - } - template - void load( Archivex & ar, const unsigned int /* file_version */) { -// ar.operator>>(value()); - } - BOOST_SERIALIZATION_SPLIT_MEMBER() + template + void save(Archivex &ar, const unsigned int /* file_version */) const { + //// ar.operator<<(const_value()); + // std::stringstream ss; + // uLib::Archive::hrt_oarchive har(ss); + // har << make_nvp(m_name,*m_value); + // // (*m_str) = ss.str(); + //// ar.operator << (make_nvp(m_name, ss.str()); + } + template + void load(Archivex &ar, const unsigned int /* file_version */) { + // ar.operator>>(value()); + } + BOOST_SERIALIZATION_SPLIT_MEMBER() }; - -template +template inline #ifndef BOOST_NO_FUNCTION_TEMPLATE_ORDERING -const + const #endif -hrp< T > make_hrp(const char * name, T & t){ - return hrp< T >(name, t); + hrp make_hrp(const char *name, T &t) { + return hrp(name, t); } -#define HRP(name) \ - boost::serialization::make_hrp(BOOST_PP_STRINGIZE(name), name) - - -} // serialization -} // boost - - - - +#define HRP(name) boost::serialization::make_hrp(BOOST_PP_STRINGIZE(name), name) +} // namespace serialization +} // namespace boost //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -151,9 +126,7 @@ hrp< T > make_hrp(const char * name, T & t){ namespace uLib { - - -#define _AR_OP(r,data,elem) data&BOOST_SERIALIZATION_BASE_OBJECT_NVP(elem); +#define _AR_OP(r, data, elem) data &BOOST_SERIALIZATION_BASE_OBJECT_NVP(elem); #define NVP(data) BOOST_SERIALIZATION_NVP(data) @@ -166,51 +139,53 @@ namespace uLib { // SO LEAVE ULIB_CFG_INTRUSIVE_SERIALIZATION NOT DEFINED #ifdef ULIB_CFG_INTRUSIVE_SERIALIZATION_OBJECT -# define ULIB_SERIALIZABLE_OBJECT _ULIB_DETAIL_INTRUSIVE_SERIALIZABLE_OBJECT -# define ULIB_SERIALIZE_OBJECT(_Ob,...) _ULIB_DETAIL_INTRUSIVE_SERIALIZE_OBJECT(_Ob,__VA_ARGS__) -# define _AR_(_name) _ULIB_DETAIL_INTRUSIVE_AR_(_name) +#define ULIB_SERIALIZABLE_OBJECT _ULIB_DETAIL_INTRUSIVE_SERIALIZABLE_OBJECT +#define ULIB_SERIALIZE_OBJECT(_Ob, ...) \ + _ULIB_DETAIL_INTRUSIVE_SERIALIZE_OBJECT(_Ob, __VA_ARGS__) +#define _AR_(_name) _ULIB_DETAIL_INTRUSIVE_AR_(_name) #else -# define ULIB_SERIALIZABLE(_Ob) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE(_Ob) \ - ULIB_CLASS_EXPORT_KEY(_Ob) -# define ULIB_SERIALIZE(_Ob,...) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE(_Ob) -# define ULIB_SERIALIZE_DERIVED(_Ob,...) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_DERIVED(_Ob,__VA_ARGS__) -# define ULIB_SERIALIZABLE_OBJECT(_Ob) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE_OBJECT(_Ob) \ - ULIB_CLASS_EXPORT_OBJECT_KEY(_Ob) -# define ULIB_SERIALIZE_OBJECT(_Ob,...) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_OBJECT(_Ob,__VA_ARGS__) -# define ULIB_SERIALIZE_OBJECT_PROPS(_Ob) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_PROPS(_Ob) -# define AR(_name) _ULIB_DETAIL_UNINTRUSIVE_AR_(_name) -# define HR(_name) _ULIB_DETAIL_UNINTRUSIVE_AR_(_name) +#define ULIB_SERIALIZABLE(_Ob) \ + _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE(_Ob) \ + ULIB_CLASS_EXPORT_KEY(_Ob) +#define ULIB_SERIALIZE(_Ob, ...) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE(_Ob) +#define ULIB_SERIALIZE_DERIVED(_Ob, ...) \ + _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_DERIVED(_Ob, __VA_ARGS__) +#define ULIB_SERIALIZABLE_OBJECT(_Ob) \ + _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE_OBJECT(_Ob) \ + ULIB_CLASS_EXPORT_OBJECT_KEY(_Ob) +#define ULIB_SERIALIZE_OBJECT(_Ob, ...) \ + _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_OBJECT(_Ob, __VA_ARGS__) +#define AR(_name) _ULIB_DETAIL_UNINTRUSIVE_AR_(_name) +#define HR(_name) _ULIB_DETAIL_UNINTRUSIVE_AR_(_name) #endif +#define ULIB_SERIALIZE_ACCESS \ + friend class boost::serialization::access; \ + template friend class boost::serialization::access2; -#define ULIB_SERIALIZE_ACCESS \ - friend class boost::serialization::access; \ - template friend class boost::serialization::access2; +#define ULIB_CLASS_EXPORT_KEY(_FullNamespaceClass) \ + BOOST_CLASS_EXPORT_KEY(_FullNamespaceClass) -#define ULIB_CLASS_EXPORT_KEY(_FullNamespaceClass) \ - BOOST_CLASS_EXPORT_KEY(_FullNamespaceClass) - -#define ULIB_CLASS_EXPORT_OBJECT_KEY(_FullNamespaceClass) \ - BOOST_CLASS_EXPORT_KEY(_FullNamespaceClass) \ - BOOST_CLASS_EXPORT_KEY(_FullNamespaceClass::ObjectProps) \ - BOOST_CLASS_EXPORT_KEY(uLib::ObjectPropsImpl<_FullNamespaceClass>) - - -#define _SERIALIZE_IMPL_SEQ \ - (uLib::Archive::text_iarchive) \ - (uLib::Archive::text_oarchive) \ - (uLib::Archive::hrt_iarchive) \ - (uLib::Archive::hrt_oarchive) \ - (uLib::Archive::xml_iarchive) \ - (uLib::Archive::xml_oarchive) \ - (uLib::Archive::log_archive) +#define ULIB_CLASS_EXPORT_OBJECT_KEY(_FullNamespaceClass) \ + BOOST_CLASS_EXPORT_KEY(_FullNamespaceClass) +#define _SERIALIZE_IMPL_SEQ \ + (uLib::Archive::text_iarchive)(uLib::Archive::text_oarchive)( \ + uLib::Archive:: \ + hrt_iarchive)(uLib::Archive:: \ + hrt_oarchive)(uLib::Archive:: \ + xml_iarchive)(uLib::Archive:: \ + xml_oarchive)(uLib::Archive:: \ + log_archive) /** Solving virtual class check problem */ -#define _ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE(_Base,_Derived) namespace boost{ template<> struct is_virtual_base_of<_Base,_Derived>: public boost::mpl::true_ {}; } -#define _ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP(r,data,elem) _ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE(elem,data) - - +#define _ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE(_Base, _Derived) \ + namespace boost { \ + template <> \ + struct is_virtual_base_of<_Base, _Derived> : public boost::mpl::true_ {}; \ + } +#define _ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP(r, data, elem) \ + _ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE(elem, data) //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -220,38 +195,57 @@ namespace uLib { //////////////////////////////////////////////////////////////////////////////// // INTRUSIVE SERIALIZATION ( NOT WORKING YET !! ) // -#define _ULIB_DETAIL_INTRUSIVE_AR_(name) ar & BOOST_SERIALIZATION_NVP(name); +#define _ULIB_DETAIL_INTRUSIVE_AR_(name) ar &BOOST_SERIALIZATION_NVP(name); -#define _ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC(Class,Archive) \ - template void Class::serialize(Archive &ar,const unsigned int); +#define _ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC(Class, Archive) \ + template void Class::serialize(Archive &ar, const unsigned int); -#define _ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC_OP(r,data,elem) _ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC(data,elem); - -#define _ULIB_DETAIL_INTRUSIVE_SERIALIZABLE_OBJECT \ - typedef boost::mpl::bool_ serializable; \ - typedef boost::mpl::remove_if< TypeList, IsUnSerializable >::type SerilizableTypeList; \ - void PrintSerializableListId() { boost::mpl::for_each(PrintTypeId()); } \ - template void serialize(ArchiveT &ar,const unsigned int version); \ - template void serialize_parents(ArchiveT &ar,const unsigned int version); \ - template void save_override(ArchiveT &ar,const unsigned int version); - -#define _ULIB_DETAIL_INTRUSIVE_SERIALIZE_OBJECT(_Ob,...) \ - template void _Ob::serialize(ArchiveT &ar, const unsigned int version) { \ - boost::serialization::void_cast_register<_Ob,_Ob::BaseClass>(static_cast<_Ob *>(NULL),static_cast<_Ob::BaseClass *>(NULL)); \ - _Ob::serialize_parents(ar,version); \ - _Ob::save_override(ar,version); }\ - template void _Ob::serialize_parents(ArchiveT &ar, const unsigned int v) { \ - BOOST_PP_SEQ_FOR_EACH(_AR_OP,ar,BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))); } \ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC_OP,_Ob,_SERIALIZE_IMPL_SEQ)\ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP,_Ob,BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))) \ - ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ - namespace boost { \ - namespace serialization { \ - template inline void load_construct_data(ArchiveT & ar, _Ob *o, const unsigned int file_version) \ - { ::new(o)_Ob(); o->init_parameters(); } }}\ - template void _Ob::save_override(ArchiveT &ar, const unsigned int version) +#define _ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC_OP(r, data, elem) \ + _ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC(data, elem); +#define _ULIB_DETAIL_INTRUSIVE_SERIALIZABLE_OBJECT \ + typedef boost::mpl::bool_ serializable; \ + typedef boost::mpl::remove_if::type \ + SerilizableTypeList; \ + void PrintSerializableListId() { \ + boost::mpl::for_each(PrintTypeId()); \ + } \ + template \ + void serialize(ArchiveT &ar, const unsigned int version); \ + template \ + void serialize_parents(ArchiveT &ar, const unsigned int version); \ + template \ + void save_override(ArchiveT &ar, const unsigned int version); +#define _ULIB_DETAIL_INTRUSIVE_SERIALIZE_OBJECT(_Ob, ...) \ + template \ + void _Ob::serialize(ArchiveT &ar, const unsigned int version) { \ + boost::serialization::void_cast_register<_Ob, _Ob::BaseClass>( \ + static_cast<_Ob *>(NULL), static_cast<_Ob::BaseClass *>(NULL)); \ + _Ob::serialize_parents(ar, version); \ + _Ob::save_override(ar, version); \ + } \ + template \ + void _Ob::serialize_parents(ArchiveT &ar, const unsigned int v) { \ + BOOST_PP_SEQ_FOR_EACH(_AR_OP, ar, BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))); \ + } \ + BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_INTRUSIVE_SERIALIZE_FUNC_OP, _Ob, \ + _SERIALIZE_IMPL_SEQ) \ + BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP, _Ob, \ + BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))) \ + ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ + namespace boost { \ + namespace serialization { \ + template \ + inline void load_construct_data(ArchiveT &ar, _Ob *o, \ + const unsigned int file_version) { \ + ::new (o) _Ob(); \ + o->init_parameters(); \ + } \ + } \ + } \ + template \ + void _Ob::save_override(ArchiveT &ar, const unsigned int version) //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -261,152 +255,171 @@ namespace uLib { //////////////////////////////////////////////////////////////////////////////// // UNINTRUSIVE SERIALIZATION -#define _UNAR_OP(r,data,elem) ar&boost::serialization::make_nvp(BOOST_PP_STRINGIZE(elem),boost::serialization::base_object(ob)); +#define _UNAR_OP(r, data, elem) \ + ar &boost::serialization::make_nvp( \ + BOOST_PP_STRINGIZE(elem), boost::serialization::base_object(ob)); -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC(Class,Archive) \ - template void boost::serialization::serialize(Archive &ar, Class &ob, const unsigned int i); - -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP(r,data,elem) _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC(data,elem) +#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC(Class, Archive) \ + template void boost::serialization::serialize(Archive &ar, Class &ob, \ + const unsigned int i); +#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP(r, data, elem) \ + _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC(data, elem) // NOTE: becouse of BOOST_PP_VARIADIC_SIZE issue of some boost macro has two // different implementation -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE(_Ob) \ - namespace boost { namespace serialization { \ - template void serialize (ArchiveT &ar, _Ob &ob, const unsigned int version); \ - template void serialize_parents (ArchiveT &ar, _Ob &ob, const unsigned int version); \ - template <> struct access2< _Ob > { template static void save_override (ArchiveT &ar, _Ob &ob, const unsigned int version); }; }} - -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE(_Ob) \ - namespace boost { namespace serialization { \ - template void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int v) {} \ - template void serialize (ArchiveT &ar, _Ob &ob, const unsigned int version) { \ - serialize_parents(ar,ob,version); \ - access2< _Ob >::save_override(ar,ob,version); } }}\ - ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP,_Ob,_SERIALIZE_IMPL_SEQ)\ - template void boost::serialization::access2< _Ob >::save_override(ArchiveT &ar, _Ob &ob, const unsigned int version) - -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_DERIVED(_Ob,...) \ - namespace boost { namespace serialization { \ - template void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int v) { \ - BOOST_PP_IF(BOOST_PP_VARIADIC_SIZE((__VA_ARGS__)),BOOST_PP_SEQ_FOR_EACH(_UNAR_OP,ob,BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__)));,) } \ - template void serialize (ArchiveT &ar, _Ob &ob, const unsigned int version) { \ - serialize_parents(ar,ob,version); \ - access2< _Ob >::save_override (ar,ob,version); } }}\ - ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP,_Ob,_SERIALIZE_IMPL_SEQ) \ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP,_Ob,BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))) \ - template void boost::serialization::access2< _Ob >::save_override(ArchiveT &ar, _Ob &ob, const unsigned int version) - - -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE_OBJECT(_Ob) \ - namespace boost { namespace serialization { \ - template void serialize (ArchiveT &ar, _Ob &ob, const unsigned int version); \ - template void serialize_parents (ArchiveT &ar, _Ob &ob, const unsigned int version); \ - template <> struct access2< _Ob > { template static void save_override (ArchiveT &ar, _Ob &ob, const unsigned int version); }; \ - template void serialize (ArchiveT &ar, class _Ob::ObjectProps &ob, const unsigned int version); \ - template void save_override (ArchiveT &ar, class _Ob::ObjectProps &ob, const unsigned int version); }} - -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_OBJECT(_Ob,...) \ - namespace boost { namespace serialization { \ - template void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int v) { \ - /* PP serialize */ BOOST_PP_SEQ_FOR_EACH(_UNAR_OP,ob,BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))); \ - /* MPL serialize */ /*uLib::mpl::for_each<_Ob::BaseList>(uLib::detail::Serializable::serialize_baseobject<_Ob,ArchiveT>(ob,ar) );*/ } \ - template inline void load_construct_data(ArchiveT & ar, _Ob *ob, const unsigned int file_version) { \ - ::new(ob)_Ob(); uLib::detail::ObjectProps::initializer::init_object(ob); } \ - template void serialize (ArchiveT &ar, _Ob &ob, const unsigned int version) { \ - void_cast_register<_Ob,_Ob::BaseClass>(static_cast<_Ob *>(NULL),static_cast<_Ob::BaseClass *>(NULL)); /*fix*/ \ - serialize_parents(ar,ob,version); \ - access2< _Ob >::save_override (ar,ob,version); } }}\ - ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP,_Ob,BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))) \ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP,_Ob,_SERIALIZE_IMPL_SEQ)\ - template void boost::serialization::access2< _Ob >::save_override(ArchiveT &ar, _Ob &ob, const unsigned int version) - -#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_PROPS(_Ob) \ - namespace boost { namespace serialization { \ - template void serialize (ArchiveT &ar, _Ob::ObjectProps &ob, const unsigned int version) { \ - save_override (ar,ob,version); } }}\ - BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP,_Ob::ObjectProps,_SERIALIZE_IMPL_SEQ)\ - ULIB_CLASS_EXPORT_IMPLEMENT(_Ob::ObjectProps) \ - ULIB_CLASS_EXPORT_IMPLEMENT(uLib::ObjectPropsImpl<_Ob>) \ - template void boost::serialization::save_override(ArchiveT &ar, _Ob::ObjectProps &ob, const unsigned int version) - - -#define _ULIB_DETAIL_UNINTRUSIVE_AR_(name) boost::serialization::make_nvp(BOOST_PP_STRINGIZE(name),ob.name) - - - +#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE(_Ob) \ + namespace boost { \ + namespace serialization { \ + template \ + void serialize(ArchiveT &ar, _Ob &ob, const unsigned int version); \ + template \ + void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int version); \ + template <> struct access2<_Ob> { \ + template \ + static void save_override(ArchiveT &ar, _Ob &ob, \ + const unsigned int version); \ + }; \ + } \ + } +#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE(_Ob) \ + namespace boost { \ + namespace serialization { \ + template \ + void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int v) {} \ + template \ + void serialize(ArchiveT &ar, _Ob &ob, const unsigned int version) { \ + serialize_parents(ar, ob, version); \ + access2<_Ob>::save_override(ar, ob, version); \ + } \ + } \ + } \ + ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ + BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP, _Ob, \ + _SERIALIZE_IMPL_SEQ) \ + template \ + void boost::serialization::access2<_Ob>::save_override( \ + ArchiveT &ar, _Ob &ob, const unsigned int version) +#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_DERIVED(_Ob, ...) \ + namespace boost { \ + namespace serialization { \ + template \ + void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int v) { \ + BOOST_PP_IF(BOOST_PP_VARIADIC_SIZE((__VA_ARGS__)), \ + BOOST_PP_SEQ_FOR_EACH(_UNAR_OP, ob, \ + BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))); \ + , ) \ + } \ + template \ + void serialize(ArchiveT &ar, _Ob &ob, const unsigned int version) { \ + serialize_parents(ar, ob, version); \ + access2<_Ob>::save_override(ar, ob, version); \ + } \ + } \ + } \ + ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ + BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP, _Ob, \ + _SERIALIZE_IMPL_SEQ) \ + BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP, _Ob, \ + BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))) \ + template \ + void boost::serialization::access2<_Ob>::save_override( \ + ArchiveT &ar, _Ob &ob, const unsigned int version) +#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZABLE_OBJECT(_Ob) \ + namespace boost { \ + namespace serialization { \ + template \ + void serialize(ArchiveT &ar, _Ob &ob, const unsigned int version); \ + template \ + void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int version); \ + template <> struct access2<_Ob> { \ + template \ + static void save_override(ArchiveT &ar, _Ob &ob, \ + const unsigned int version); \ + }; \ + } \ + } +#define _ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_OBJECT(_Ob, ...) \ + namespace boost { \ + namespace serialization { \ + template \ + void serialize_parents(ArchiveT &ar, _Ob &ob, const unsigned int v) { \ + /* PP serialize */ BOOST_PP_SEQ_FOR_EACH( \ + _UNAR_OP, ob, BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))); \ + /* MPL serialize */ /*uLib::mpl::for_each<_Ob::BaseList>(uLib::detail::Serializable::serialize_baseobject<_Ob,ArchiveT>(ob,ar) );*/ } \ + template \ + inline void load_construct_data(ArchiveT &ar, _Ob *ob, \ + const unsigned int file_version) { \ + ::new (ob) _Ob(); \ + } \ + template \ + void serialize(ArchiveT &ar, _Ob &ob, const unsigned int version) { \ + void_cast_register<_Ob, _Ob::BaseClass>( \ + static_cast<_Ob *>(NULL), \ + static_cast<_Ob::BaseClass *>(NULL)); /*fix*/ \ + serialize_parents(ar, ob, version); \ + access2<_Ob>::save_override(ar, ob, version); \ + } \ + } \ + } \ + ULIB_CLASS_EXPORT_IMPLEMENT(_Ob) \ + BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_SPECIALIZE_IS_VIRTUAL_BASE_OP, _Ob, \ + BOOST_PP_TUPLE_TO_SEQ((__VA_ARGS__))) \ + BOOST_PP_SEQ_FOR_EACH(_ULIB_DETAIL_UNINTRUSIVE_SERIALIZE_FUNC_OP, _Ob, \ + _SERIALIZE_IMPL_SEQ) \ + template \ + void boost::serialization::access2<_Ob>::save_override( \ + ArchiveT &ar, _Ob &ob, const unsigned int version) +#define _ULIB_DETAIL_UNINTRUSIVE_AR_(name) \ + boost::serialization::make_nvp(BOOST_PP_STRINGIZE(name), ob.name) //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// - - namespace detail { struct Serializable { - /** - * Serializable trait to check if an object type is serializable. - * This only works if UNINTRUSIVE SERIALIZATION is applyed; in intrusive - * cases a has_serialize trait should be implemented - */ - template - struct serializable_trait : mpl::bool_ {}; - - /** - * IsA Serializable Implementation Template - */ - template - struct IsA : serializable_trait {}; - - template - struct serialize_baseobject { - ThisClass & m_object; - Archive & m_ar; - serialize_baseobject(ThisClass &o, Archive &ar) : m_object(o), m_ar(ar) {} - template void operator()(T &o) { - m_ar & boost::serialization::make_nvp( - typeid(T).name() , - boost::serialization::base_object(m_object)); - } - }; + /** + * Serializable trait to check if an object type is serializable. + * This only works if UNINTRUSIVE SERIALIZATION is applyed; in intrusive + * cases a has_serialize trait should be implemented + */ + template struct serializable_trait : mpl::bool_ {}; + /** + * IsA Serializable Implementation Template + */ + template struct IsA : serializable_trait {}; + template struct serialize_baseobject { + ThisClass &m_object; + Archive &m_ar; + serialize_baseobject(ThisClass &o, Archive &ar) : m_object(o), m_ar(ar) {} + template void operator()(T &o) { + m_ar &boost::serialization::make_nvp( + typeid(T).name(), boost::serialization::base_object(m_object)); + } + }; }; - -} // detail - - - - +} // namespace detail struct Serializable { - friend class boost::serialization::access; - template friend class boost::serialization::access2; - virtual ~Serializable() {} + friend class boost::serialization::access; + template friend class boost::serialization::access2; + virtual ~Serializable() {} + protected: }; - - - - -} // uLib - - - - - +} // namespace uLib #endif // U_SERIALIZABLE_H diff --git a/src/Core/Types.h b/src/Core/Types.h index 7760e88..5c04028 100644 --- a/src/Core/Types.h +++ b/src/Core/Types.h @@ -23,8 +23,6 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_CORE_TYPES_H #define U_CORE_TYPES_H @@ -33,253 +31,182 @@ #include -//#include +// #include #include "Core/Macros.h" #include "Core/Mpl.h" - - - - - - namespace uLib { - //////////////////////////////////////////////////////////////////////////////// namespace detail { struct TypeIntrospection { - // BOOST IMPL // - BOOST_MPL_HAS_XXX_TRAIT_DEF(type_info) + // BOOST IMPL // + BOOST_MPL_HAS_XXX_TRAIT_DEF(type_info) - // SFINAE IMPL // - /* - template - struct has_type_info { - typedef char yes[1]; - typedef char no[2]; - template static yes& test(typename U::type_info::BaseList*); - template static no& test(...); - // struct apply { - static const bool value = sizeof(test(0)) == sizeof(yes); - typedef boost::mpl::bool_ type; - // }; - }; - */ + // SFINAE IMPL // + /* + template + struct has_type_info { + typedef char yes[1]; + typedef char no[2]; + template static yes& test(typename U::type_info::BaseList*); + template static no& test(...); + // struct apply { + static const bool value = sizeof(test(0)) == sizeof(yes); + typedef boost::mpl::bool_ type; + // }; + }; + */ - /** IsA Introspectable Object Implementation Template */ - template - struct IsIntrospectable : has_type_info {}; + /** IsA Introspectable Object Implementation Template */ + template struct IsIntrospectable : has_type_info {}; - template struct access { - typedef typename T::type_info type_info; + template struct access { + typedef typename T::type_info type_info; + }; + + template struct child_first_impl { + + template struct lambda_CFList_f { + typedef mpl::vector type; }; - template - struct child_first_impl { - - template - struct lambda_CFList_f { - typedef mpl::vector type; - }; - - template - struct lambda_CFList_f { - // typedef typename T1::type_info::CFList type; - typedef typename access::type_info::CFList type; - }; - - template - struct lambda_CFList : lambda_CFList_f::value> {}; - - /** Transforms all Base Type into proper CFList */ - typedef typename mpl::transform_view < typename access::type_info::BaseList - , lambda_CFList - >::type CFListSeq; - - /** Folds each CFList into a new sequence */ - typedef typename mpl::fold< CFListSeq - , mpl::vector<> - , mpl::copy< mpl::_1 - , mpl::back_inserter - > - >::type Childs; - - /** Add This Class to final CFList sequence */ - typedef typename mpl::copy< Childs - , mpl::back_inserter< mpl::vector > - >::type type; + template struct lambda_CFList_f { + // typedef typename T1::type_info::CFList type; + typedef typename access::type_info::CFList type; }; + template + struct lambda_CFList : lambda_CFList_f::value> {}; - /** - * Tests if T has a member called type_info then compile type CFList - */ - template - struct child_first : mpl::if_< has_type_info - , child_first_impl - , mpl::vector<> - >::type {}; + /** Transforms all Base Type into proper CFList */ + typedef + typename mpl::transform_view::type_info::BaseList, + lambda_CFList>::type CFListSeq; + /** Folds each CFList into a new sequence */ + typedef typename mpl::fold< + CFListSeq, mpl::vector<>, + mpl::copy>>::type Childs; + /** Add This Class to final CFList sequence */ + typedef typename mpl::copy>>::type + type; + }; + + /** + * Tests if T has a member called type_info then compile type CFList + */ + template + struct child_first + : mpl::if_, child_first_impl, mpl::vector<>>::type {}; }; - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // TYPE ADAPTERS // FINIRE !!! -//#define _REPETITION_V(vz,vn,vdata) - - -//template < class TypeList > -//class TypeAdapterInputInterface { -// virtual ~TypeAdapterInputInterface() {} -//public: - +// #define _REPETITION_V(vz,vn,vdata) +// template < class TypeList > +// class TypeAdapterInputInterface { +// virtual ~TypeAdapterInputInterface() {} +// public: // virtual void operator()(int val) {} // virtual void operator()(std::string val) {} //}; - - - - - - -} // detail //////////////////////////////////////////////////////////////////// - +} // namespace detail #define CONSTEXPR BOOST_CONSTEXPR - -//typedef ltk::Real_t Real_t; +// typedef ltk::Real_t Real_t; #ifndef LTK_DOUBLE_PRECISION -typedef float Real_t; +typedef float Real_t; #else -typedef double Real_t; +typedef double Real_t; #endif -//typedef ltk::Id_t Id_t; -typedef id_t Id_t; +// typedef ltk::Id_t Id_t; +typedef id_t Id_t; ////typedef ltk::Size_t Size_t; -//typedef ltk::Pointer_t Pointer_t; -typedef void * Pointer_t; -typedef bool Bool_t; //Boolean (0=false, 1=true) (bool) - - +// typedef ltk::Pointer_t Pointer_t; +typedef void *Pointer_t; +typedef bool Bool_t; // Boolean (0=false, 1=true) (bool) //--- bit manipulation --------------------------------------------------------- #ifndef BIT -#define BIT(n) (1ULL << (n)) +#define BIT(n) (1ULL << (n)) #endif #ifndef SETBIT -#define SETBIT(n,i) ((n) |= BIT(i)) +#define SETBIT(n, i) ((n) |= BIT(i)) #endif #ifndef CLRBIT -#define CLRBIT(n,i) ((n) &= ~BIT(i)) +#define CLRBIT(n, i) ((n) &= ~BIT(i)) #endif #ifndef TESTBIT -#define TESTBIT(n,i) ((Bool_t)(((n) & BIT(i)) != 0)) +#define TESTBIT(n, i) ((Bool_t)(((n) & BIT(i)) != 0)) #endif - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // TYPE INTROSPECTION FOR OBJECTS // - - -#define uLibTypeMacro(thisClass,...) \ - \ - /* Friendship detail for accessing introspection */ \ - template friend class uLib::detail::TypeIntrospection::access; \ - \ - /* type info structure*/ public: \ - /* in GCC 4.8 must be public or dynamic_cast wont work */ \ - struct type_info { \ - /*WARNING: -std=c++0x required for this! */ \ - constexpr static const char *name = BOOST_PP_STRINGIZE(thisClass); \ - typedef BOOST_PP_VARIADIC_ELEM(0,__VA_ARGS__) BaseClass; \ - typedef thisClass ThisClass; \ - typedef uLib::mpl::vector<__VA_ARGS__,thisClass> TypeList; \ - typedef uLib::mpl::vector<__VA_ARGS__> BaseList; \ - typedef uLib::detail::TypeIntrospection::child_first::type CFList; \ - }; \ - \ - public: \ - typedef type_info::BaseClass BaseClass; \ - virtual const char *type_name() const { return type_info::name; } \ - /* Object Props fwd declaration*/ \ - struct ObjectProps; \ - /**/ - +#define uLibTypeMacro(thisClass, ...) \ + \ + /* Friendship detail for accessing introspection */ \ + template friend class uLib::detail::TypeIntrospection::access; \ + \ +/* type info structure*/ public: \ + /* in GCC 4.8 must be public or dynamic_cast wont work */ \ + struct type_info { \ + /*WARNING: -std=c++0x required for this! */ \ + constexpr static const char *name = BOOST_PP_STRINGIZE(thisClass); \ + typedef BOOST_PP_VARIADIC_ELEM(0, __VA_ARGS__) BaseClass; \ + typedef thisClass ThisClass; \ + typedef uLib::mpl::vector<__VA_ARGS__, thisClass> TypeList; \ + typedef uLib::mpl::vector<__VA_ARGS__> BaseList; \ + typedef uLib::detail::TypeIntrospection::child_first::type \ + CFList; \ + }; \ + \ +public: \ + typedef type_info::BaseClass BaseClass; \ + virtual const char *type_name() const { return type_info::name; } \ + /**/ /** * TypeList inheritance introspection */ struct TypeIntrospection { - template - struct child_first : detail::TypeIntrospection::child_first {}; - + template + struct child_first : detail::TypeIntrospection::child_first {}; }; - - - - - // SISTEMARE // struct PrintTypeId { - template - void operator()(T) const - { std::cout << typeid(T).name() << std::endl; } + template void operator()(T) const { + std::cout << typeid(T).name() << std::endl; + } - template - static void PrintMplSeq(SeqT *p = NULL) { boost::mpl::for_each(PrintTypeId()); } + template static void PrintMplSeq(SeqT *p = NULL) { + boost::mpl::for_each(PrintTypeId()); + } - template - static void PrintType(Class *p = NULL) { std::cout << typeid(Class).name() << std::endl; } + template static void PrintType(Class *p = NULL) { + std::cout << typeid(Class).name() << std::endl; + } }; - - - - - - -} // uLib +} // namespace uLib #endif // U_CORE_TYPES_H - - - - - - - - - - - - - - - - - - - - - diff --git a/src/Core/testing/CMakeLists.txt b/src/Core/testing/CMakeLists.txt index a9ae42a..05d28af 100644 --- a/src/Core/testing/CMakeLists.txt +++ b/src/Core/testing/CMakeLists.txt @@ -16,7 +16,6 @@ set( TESTS SerializeTest SerializeDreadDiamondTest DreadDiamondParameters - ObjectPropableTest UuidTest TypeIntrospectionTraversal OptionsTest diff --git a/src/Core/testing/Makefile.am b/src/Core/testing/Makefile.am index 882b9fd..57a2c79 100644 --- a/src/Core/testing/Makefile.am +++ b/src/Core/testing/Makefile.am @@ -19,7 +19,6 @@ TESTS = SmartPointerTest \ SerializeTest \ SerializeDreadDiamondTest \ DreadDiamondParameters \ - ObjectPropableTest \ TypeIntrospectionTraversal \ OptionsTest diff --git a/src/Core/testing/ObjectPropableTest.cpp b/src/Core/testing/ObjectPropableTest.cpp deleted file mode 100644 index 9e319db..0000000 --- a/src/Core/testing/ObjectPropableTest.cpp +++ /dev/null @@ -1,237 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#include -#include -#include -#include - - -#include "Core/Types.h" -#include "Core/Object.h" -#include "Core/ObjectProps.h" -#include "Core/StringReader.h" -#include "Math/Dense.h" - -#include "boost/archive/text_oarchive.hpp" -#include "boost/archive/text_iarchive.hpp" - - -#include "testing-prototype.h" - - - - -using namespace uLib; - - - -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -// STRUCTURES // - - -struct A : virtual Object { - - uLibTypeMacro(A, Object) - - properties() { - int p_a; - Vector3f p_3f; - }; - - int m_a; -}; - -void A::init_properties() { - $_init(); - $$.p_a = 0; - $$.p_3f << 1,2,3; -} - -ULIB_SERIALIZABLE_OBJECT(A) -ULIB_SERIALIZE_OBJECT(A, Object) { ar & AR(m_a); } -ULIB_SERIALIZE_OBJECT_PROPS(A) { ar & AR(p_a) & AR(p_3f); } - - - - -struct B : A { - uLibTypeMacro(B,A) - - properties() { - std::string p; - }; - - B() : m_b(324) {} - - int m_b; -}; - - -void B::init_properties() { - $_init(); - $$.p = "ciao"; -} - -ULIB_SERIALIZABLE_OBJECT(B) -ULIB_SERIALIZE_OBJECT(B,A) { ar & AR(m_b); } -ULIB_SERIALIZE_OBJECT_PROPS(B) { ar & AR(p); } - - - -struct C { - int m_c; - std::string m_str; -}; - -ULIB_SERIALIZABLE(C) -ULIB_SERIALIZE(C) { ar & AR(m_c) & AR(m_str); } - - - -struct D : virtual Object, B { - uLibTypeMacro(D,Object,B) - - properties() { - C p_c; - }; -}; - -void D::init_properties() { - $_init(); - $$.p_c.m_c = 1234; -} - -ULIB_SERIALIZABLE_OBJECT(D) -ULIB_SERIALIZE_OBJECT(D,Object) {} -ULIB_SERIALIZE_OBJECT_PROPS(D) { - ar & AR(p_c); -} - - - -class E : public C, public D { - uLibTypeMacro(E,D,C) -public: - E() : m_Ea(5552368) {} - int m_Ea; -}; - -ULIB_SERIALIZABLE_OBJECT(E) -ULIB_SERIALIZE_OBJECT(E,C,D) { - ar & AR(m_Ea); -} - - - - -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -// TESTS // - - -int test_xml_direct() { - // TEST ARCHIVE SAVE AND LOAD direct // - E o; o.init_properties(); - o.$$.p_c.m_str = "works"; - { - std::ofstream file("test.xml"); - Archive::xml_oarchive ar(file); - ar << NVP(o); - } - o.$$.p_c.m_str = "hola"; - { - std::ifstream file("test.xml"); - Archive::xml_iarchive ar(file); - ar >> NVP(o); - } - std::cout << o.$$.p_c.m_str << "\n"; - return ( o.$$.p_c.m_str == "works" ); -} - - -int test_xml_pointer() { - // TEST ARCHIVE SAVE AND LOAD from pointer // - E *o = new E; o->init_properties(); - o->$$.p_c.m_str = "works"; - { - std::ofstream file("test.xml"); - Archive::xml_oarchive ar(file); - ar << NVP(o); - } - o->$$.p_c.m_str = "hola"; - { - std::ifstream file("test.xml"); - Archive::xml_iarchive ar(file); - ar >> NVP(o); - } - std::cout << o->$$.p_c.m_str << "\n"; - return ( o->$$.p_c.m_str == "works" ); -} - - -int test_xml_objsave() { - // TEST SELF SAVE - E o; o.init_properties(); - o.$(B).p = "works"; - { - std::ofstream file("test.xml"); - Object::SaveXml(file,o); - } - o.$(B).p = "hola"; - { - std::ifstream file("test.xml"); - Object::LoadXml(file,o); - } - - std::cout << o.$(B).p << "\n"; - return ( o.$(B).p == "works" ); -} - - - - -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -// MAIN // - -int main() -{ - BEGIN_TESTING(PropableTest); - - TEST1( test_xml_direct() ); - TEST1( test_xml_pointer() ); - TEST1( test_xml_objsave() ); - - END_TESTING; -} - - diff --git a/src/Math/Dense.h b/src/Math/Dense.h index 3e11884..7c4b587 100644 --- a/src/Math/Dense.h +++ b/src/Math/Dense.h @@ -23,9 +23,6 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - /* * * Copyright (C) 2012 Andrea Rigoni Garola @@ -47,7 +44,6 @@ * */ - #ifndef ULIB_DENSEMATRIX_H #define ULIB_DENSEMATRIX_H @@ -55,27 +51,29 @@ #include - //// BOOST SERIALIZATION /////////////////////////////////////////////////////// #include #include #include #include -#include #include - +#include namespace boost { namespace serialization { -template -void serialize(Archive & ar, ::Eigen::Matrix & m, const unsigned int /*version*/) { - ar & boost::serialization::make_array(m.data(), RowsAtCompileTime * ColsAtCompileTime); +template +void serialize(Archive &ar, + ::Eigen::Matrix &m, + const unsigned int /*version*/) { + ar &boost::serialization::make_array(m.data(), + RowsAtCompileTime * ColsAtCompileTime); } -} // serialization -} // boost +} // namespace serialization +} // namespace boost //////////////////////////////////////////////////////////////////////////////// @@ -84,177 +82,163 @@ void serialize(Archive & ar, ::Eigen::Matrix -std::istream & operator >> (std::istream &is, Eigen::Matrix &vec) { - std::string str; - for( unsigned int i=0; i> std::skipws; - is >> str; - if(is.fail()) vec(i) = 0; - else vec(i) = boost::lexical_cast(str); - } - return is; +std::istream &operator>>(std::istream &is, Eigen::Matrix &vec) { + std::string str; + for (unsigned int i = 0; i < size; i++) { + is >> std::skipws; + is >> str; + if (is.fail()) + vec(i) = 0; + else + vec(i) = boost::lexical_cast(str); + } + return is; } template -std::ostream & operator << (std::ostream &os, const Eigen::Matrix &vec) { - os << vec.transpose(); - return os; +std::ostream &operator<<(std::ostream &os, + const Eigen::Matrix &vec) { + os << vec.transpose(); + return os; } -} // Eigen +} // namespace Eigen //////////////////////////////////////////////////////////////////////////////// - - namespace uLib { -typedef id_t Id_t; +typedef id_t Id_t; -typedef int Scalari; -typedef unsigned int Scalarui; -typedef long Scalarl; +typedef int Scalari; +typedef unsigned int Scalarui; +typedef long Scalarl; typedef unsigned long Scalarul; -typedef float Scalarf; -typedef double Scalard; +typedef float Scalarf; +typedef double Scalard; - - -typedef Eigen::Matrix Matrix1i; +typedef Eigen::Matrix Matrix1i; typedef Eigen::Matrix2i Matrix2i; typedef Eigen::Matrix3i Matrix3i; typedef Eigen::Matrix4i Matrix4i; -typedef Eigen::Matrix Matrix1f; +typedef Eigen::Matrix Matrix1f; typedef Eigen::Matrix2f Matrix2f; typedef Eigen::Matrix3f Matrix3f; typedef Eigen::Matrix4f Matrix4f; -typedef Eigen::Matrix Vector1i; +typedef Eigen::Matrix Vector1i; typedef Eigen::Vector2i Vector2i; typedef Eigen::Vector3i Vector3i; typedef Eigen::Vector4i Vector4i; -typedef Eigen::Matrix Vector1f; +typedef Eigen::Matrix Vector1f; typedef Eigen::Vector2f Vector2f; typedef Eigen::Vector3f Vector3f; typedef Eigen::Vector4f Vector4f; - - //////////////////////////////////////////////////////////////////////////////// // Vector String interaction /////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// /*! Given a string consisting of a series of doubles with some -* delimiter, return an Eigen::Vector populated with those -* values, in the same order as they are given in the string. -* -* \param vec A double vector to be populated with the results -* \param str A string to be parsed as a series of doubles. -* \param delim Delimiters of the text (a typical default is " ," for comma and space-delimited text -* -*/ + * delimiter, return an Eigen::Vector populated with those + * values, in the same order as they are given in the string. + * + * \param vec A double vector to be populated with the results + * \param str A string to be parsed as a series of doubles. + * \param delim Delimiters of the text (a typical default is " ," for comma and + * space-delimited text + * + */ template -void VectorxT_StringTo(Eigen::Matrix &vec, std::string str, const char *delim = " ,;\t\n") { - std::vector strvec; +void VectorxT_StringTo(Eigen::Matrix &vec, std::string str, + const char *delim = " ,;\t\n") { + std::vector strvec; - boost::algorithm::trim_if( str, boost::algorithm::is_any_of(delim)); - boost::algorithm::split(strvec,str,boost::algorithm::is_any_of(delim), boost::algorithm::token_compress_on); + boost::algorithm::trim_if(str, boost::algorithm::is_any_of(delim)); + boost::algorithm::split(strvec, str, boost::algorithm::is_any_of(delim), + boost::algorithm::token_compress_on); - for( unsigned int i=0; i(strvec[i]); - } + for (unsigned int i = 0; i < size; i++) { + vec(i) = boost::lexical_cast(strvec[i]); + } } template -std::string VectorxT_ToString(const Eigen::Matrix &vec) { - std::stringstream sst; - sst << vec.transpose(); - return sst.str(); +std::string VectorxT_ToString(const Eigen::Matrix &vec) { + std::stringstream sst; + sst << vec.transpose(); + return sst.str(); } - -//template -//Eigen::Matrix & operator >> (std::istream &is, Eigen::Matrix &vec) { -//} +// template +// Eigen::Matrix & operator >> (std::istream &is, +// Eigen::Matrix &vec) { +// } template -void operator>> (std::string& str, Eigen::Matrix &vec){ - VectorxT_StringTo(vec,str); +void operator>>(std::string &str, Eigen::Matrix &vec) { + VectorxT_StringTo(vec, str); } - //////////////////////////////////////////////////////////////////////////////// ////// HOMOGENEOUS VECTORS ////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// -template -class _HPoint3f : public Eigen::Matrix< Scalarf,4,1 > { +template class _HPoint3f : public Eigen::Matrix { public: - typedef Eigen::Matrix< Scalarf,4,1 > BaseClass; + typedef Eigen::Matrix BaseClass; - _HPoint3f

() : BaseClass(0,0,0,p) {} - _HPoint3f

(float x,float y,float z) : BaseClass(x,y,z,p) {} - _HPoint3f

(Vector3f &in) : BaseClass(in.homogeneous()) { this->operator()(3) = p; } + _HPoint3f() : BaseClass(0, 0, 0, p) {} + _HPoint3f(float x, float y, float z) : BaseClass(x, y, z, p) {} + _HPoint3f(Vector3f &in) : BaseClass(in.homogeneous()) { + this->operator()(3) = p; + } - void operator delete(void* _p, size_t _s) {} + void operator delete(void *_p, size_t _s) {} - // This constructor allows to construct MyVectorType from Eigen expressions - template - inline _HPoint3f

(const Eigen::MatrixBase& other) - : BaseClass(other) - { } - - // This method allows to assign Eigen expressions to Vector3H - template - inline _HPoint3f

& operator= (const Eigen::MatrixBase & other) - { - this->BaseClass::operator=(other); - return *this; - } + // This constructor allows to construct MyVectorType from Eigen expressions + template + inline _HPoint3f(const Eigen::MatrixBase &other) + : BaseClass(other) {} + // This method allows to assign Eigen expressions to Vector3H + template + inline _HPoint3f &operator=(const Eigen::MatrixBase &other) { + this->BaseClass::operator=(other); + return *this; + } }; typedef _HPoint3f HVector3f; typedef _HPoint3f HPoint3f; - - - //////////////////////////////////////////////////////////////////////////////// ////// HOMOGENEOUS LINE ////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// - -struct _HLine3f -{ - HPoint3f origin; - HVector3f direction; +struct _HLine3f { + HPoint3f origin; + HVector3f direction; }; typedef struct _HLine3f HLine3f; -inline std::ostream& -operator<< (std::ostream& stream, const HLine3f &line) { - stream << "HLine3f(" << "pt[" << line.origin.transpose() <<"] , dr[" << line.direction.transpose() << "]) "; - return stream; +inline std::ostream &operator<<(std::ostream &stream, const HLine3f &line) { + stream << "HLine3f(" << "pt[" << line.origin.transpose() << "] , dr[" + << line.direction.transpose() << "]) "; + return stream; } - - - -struct _HError3f -{ - HVector3f position_error; - HVector3f direction_error; +struct _HError3f { + HVector3f position_error; + HVector3f direction_error; }; typedef struct _HError3f HError3f; -inline std::ostream& -operator<< (std::ostream& stream, const HError3f &err) { - stream << "HError3f(" << "ept[" << err.position_error.transpose() <<"] , edr[" << err.direction_error.transpose() << "]) "; - return stream; -} - - +inline std::ostream &operator<<(std::ostream &stream, const HError3f &err) { + stream << "HError3f(" << "ept[" << err.position_error.transpose() + << "] , edr[" << err.direction_error.transpose() << "]) "; + return stream; } +} // namespace uLib //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -268,13 +252,9 @@ ULIB_SERIALIZABLE(uLib::HPoint3f) ULIB_SERIALIZABLE(uLib::HVector3f) - ULIB_SERIALIZABLE(uLib::HLine3f) ULIB_SERIALIZABLE(uLib::HError3f) #endif // ULIB_SERIALIZATION_ON - - - -#endif // U_DENSEMATRIX_H +#endif // U_DENSEMATRIX_H diff --git a/src/Math/VoxRaytracer.cpp b/src/Math/VoxRaytracer.cpp index ae87c13..074b8b0 100644 --- a/src/Math/VoxRaytracer.cpp +++ b/src/Math/VoxRaytracer.cpp @@ -23,11 +23,10 @@ //////////////////////////////////////////////////////////////////////////////*/ - #include -#include "VoxRaytracer.h" #include "Utils.h" +#include "VoxRaytracer.h" #define unlikely(expr) __builtin_expect(!!(expr), 0) @@ -39,215 +38,206 @@ namespace uLib { ///// RAY DATA ///////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// -void VoxRaytracer::RayData::AddElement(Id_t id, float L) -{ - Element el = {id, L}; - m_Data.push_back(el); - m_TotalLength += L; +void VoxRaytracer::RayData::AddElement(Id_t id, float L) { + Element el = {id, L}; + m_Data.push_back(el); + m_TotalLength += L; } - -void VoxRaytracer::RayData::AppendRay(const VoxRaytracer::RayData &in) -{ - if (unlikely(!in.m_Data.size())) { - std::cout << "Warinig: PoCA on exit border!\n"; - return; - } - else if (unlikely(!m_Data.size())) { - m_Data = in.m_Data; - std::cout << "Warinig: PoCA on entrance border!\n"; - return; - } - else { - // Opzione 1) un voxel in piu' // - m_Data.reserve(m_Data.size() + in.m_Data.size()); - m_Data.insert(m_Data.end(), in.m_Data.begin(), in.m_Data.end()); - // Opzione 2) merge dei voxel nel poca. - // RayData::Element &e1 = m_Data.back(); - // const RayData::Element &e2 = in.m_Data.front(); - // if(e1.vox_id == e2.vox_id) - // { - // m_Data.reserve(m_Data.size() + in.m_Data.size() - 1); - // e1.L += e2.L; //fix// - // m_Data.insert(m_Data.end(), in.m_Data.begin()+1, in.m_Data.end()); - // } - // else { - // m_Data.reserve(m_Data.size() + in.m_Data.size()); - // m_Data.insert(m_Data.end(), in.m_Data.begin(), in.m_Data.end()); - // } - m_TotalLength += in.m_TotalLength; +void VoxRaytracer::RayData::AppendRay(const VoxRaytracer::RayData &in) { + if (unlikely(!in.m_Data.size())) { + std::cout << "Warinig: PoCA on exit border!\n"; + return; + } else if (unlikely(!m_Data.size())) { + m_Data = in.m_Data; + std::cout << "Warinig: PoCA on entrance border!\n"; + return; + } else { + // Opzione 1) un voxel in piu' // + if (in.m_Data.size() > 0) { + m_Data.insert(m_Data.end(), in.m_Data.begin(), in.m_Data.end()); } + // Opzione 2) merge dei voxel nel poca. + // RayData::Element &e1 = m_Data.back(); + // const RayData::Element &e2 = in.m_Data.front(); + // if(e1.vox_id == e2.vox_id) + // { + // m_Data.reserve(m_Data.size() + in.m_Data.size() - 1); + // e1.L += e2.L; //fix// + // m_Data.insert(m_Data.end(), in.m_Data.begin()+1, + // in.m_Data.end()); + // } + // else { + // m_Data.reserve(m_Data.size() + in.m_Data.size()); + // m_Data.insert(m_Data.end(), in.m_Data.begin(), + // in.m_Data.end()); + // } + m_TotalLength += in.m_TotalLength; + } } -void VoxRaytracer::RayData::PrintSelf(std::ostream &o) -{ - o << "Ray: total lenght " << m_TotalLength << "\n"; - std::vector::iterator it; - for(it = m_Data.begin(); it < m_Data.end(); ++it) - o << "[ " << (*it).vox_id << ", " << (*it).L << "] \n"; +void VoxRaytracer::RayData::PrintSelf(std::ostream &o) { + o << "Ray: total lenght " << m_TotalLength << "\n"; + std::vector::iterator it; + for (it = m_Data.begin(); it < m_Data.end(); ++it) + o << "[ " << (*it).vox_id << ", " << (*it).L << "] \n"; } - //////////////////////////////////////////////////////////////////////////////// //// RAY TRACER //////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// +bool VoxRaytracer::GetEntryPoint(const HLine3f &line, HPoint3f &pt) { + Vector4f s = m_Image->GetLocalPoint(line.direction); + pt = m_Image->GetLocalPoint(line.origin); -bool VoxRaytracer::GetEntryPoint(const HLine3f &line, HPoint3f &pt) -{ - Vector4f s = m_Image->GetLocalPoint(line.direction); - pt = m_Image->GetLocalPoint(line.origin); + // Considers Structured grid dimensions // + Vector4f dims = m_Image->GetDims().homogeneous().cast(); + pt = pt.cwiseQuotient(dims); + s = s.cwiseQuotient(dims); - // Considers Structured grid dimensions // - Vector4f dims = m_Image->GetDims().homogeneous().cast(); - pt = pt.cwiseQuotient(dims); - s = s.cwiseQuotient(dims); + float l = s.head(3).norm(); + Vector3f L(l / s(0), l / s(1), l / s(2)); - float l = s.head(3).norm(); - Vector3f L(l/s(0), l/s(1), l/s(2)); + Vector3f offset; + for (int i = 0; i < 3; ++i) + offset(i) = (s(i) > 0) - (pt(i) - floor(pt(i))); + offset = offset.cwiseProduct(L).cwiseAbs(); - Vector3f offset; - for(int i=0;i<3;++i) - offset(i) = (s(i)>0) - (pt(i)-floor(pt(i))) ; - offset = offset.cwiseProduct(L).cwiseAbs(); - - int id; float d; - for(int loop=0; loop<8; loop++) - { - int check_border = 0; - for ( int i=0; i<3 ;++i) { - check_border += pt(i) > 1; - check_border += pt(i) < 0; - } - if(check_border == 0) { - for(int i=0;i<3;++i) - pt(i) *= (float)dims(i); - pt = m_Image->GetWorldPoint(pt); - return true; - } - - d = offset.minCoeff(&id); - for(int i=0; i<3; ++i) - pt(i) += d / L(i); - - pt(id) = rintf(pt(id)); - - - offset.array() -= d; - offset(id) = fabs(L(id)); + int id; + float d; + for (int loop = 0; loop < 8; loop++) { + int check_border = 0; + for (int i = 0; i < 3; ++i) { + check_border += pt(i) > 1; + check_border += pt(i) < 0; } - for(int i=0;i<3;++i) + if (check_border == 0) { + for (int i = 0; i < 3; ++i) pt(i) *= (float)dims(i); - pt = m_Image->GetWorldPoint(pt); - return false; -} - -bool VoxRaytracer::GetExitPoint(const HLine3f &line, HPoint3f &pt) -{ - HLine3f out = line; - out.direction *= -1; - return GetEntryPoint(out,pt); -} - - -VoxRaytracer::RayData VoxRaytracer::TraceBetweenPoints(const HPoint3f &in, - const HPoint3f &out) -const -{ - RayData ray; - Vector4f pt1 = m_Image->GetLocalPoint(in); - Vector4f pt2 = m_Image->GetLocalPoint(out); - Vector4f s = pt2 - pt1; - - float l = s.head(3).norm(); - Vector3f L(l/s(0), l/s(1), l/s(2)); - - // Vector3f scale; // FIXXX - // scale << (m_Image->GetWorldMatrix() * Vector4f(1,0,0,0)).norm(), - // (m_Image->GetWorldMatrix() * Vector4f(0,1,0,0)).norm(), - // (m_Image->GetWorldMatrix() * Vector4f(0,0,1,0)).norm(); - - Vector3f offset; - for(int i=0;i<3;++i) offset(i) = (s(i)>=0) - (pt1(i)-floor(pt1(i))) ; - offset = offset.cwiseProduct(L).cwiseAbs(); - L = L.cwiseAbs(); - - //---- Check if the ray only crosses one voxel - Vector3i vid = m_Image->Find(in); - if(vid == m_Image->Find(out)){ - ray.AddElement(m_Image->Map(vid),s.norm()); - return ray; + pt = m_Image->GetWorldPoint(pt); + return true; } - //---- Otherwise, loop until ray is finished - int id; float d; - while(l>0){ + d = offset.minCoeff(&id); + for (int i = 0; i < 3; ++i) + pt(i) += d / L(i); - d = offset.minCoeff(&id); + pt(id) = rintf(pt(id)); - if(m_Image->IsInsideGrid(vid)){ - ray.AddElement(m_Image->Map(vid), d * m_scale(id) ); - } + offset.array() -= d; + offset(id) = fabs(L(id)); + } + for (int i = 0; i < 3; ++i) + pt(i) *= (float)dims(i); + pt = m_Image->GetWorldPoint(pt); + return false; +} - // nan check // - // if(unlikely(!isFinite(d * scale(id)))) { - // std:: cout << "NAN in raytracer\n"; - // exit(1); - // } +bool VoxRaytracer::GetExitPoint(const HLine3f &line, HPoint3f &pt) { + HLine3f out = line; + out.direction *= -1; + return GetEntryPoint(out, pt); +} - vid(id) += (int)fast_sign(s(id)); +VoxRaytracer::RayData +VoxRaytracer::TraceBetweenPoints(const HPoint3f &in, + const HPoint3f &out) const { + RayData ray; + Vector4f pt1 = m_Image->GetLocalPoint(in); + Vector4f pt2 = m_Image->GetLocalPoint(out); + Vector4f s = pt2 - pt1; - l -= d; - offset.array() -= d; - offset(id) = fmin(L(id),l); - } + float l = s.head(3).norm(); + Vector3f L(l / s(0), l / s(1), l / s(2)); + + // Vector3f scale; // FIXXX + // scale << (m_Image->GetWorldMatrix() * Vector4f(1,0,0,0)).norm(), + // (m_Image->GetWorldMatrix() * Vector4f(0,1,0,0)).norm(), + // (m_Image->GetWorldMatrix() * Vector4f(0,0,1,0)).norm(); + + Vector3f offset; + for (int i = 0; i < 3; ++i) + offset(i) = (s(i) >= 0) - (pt1(i) - floor(pt1(i))); + offset = offset.cwiseProduct(L).cwiseAbs(); + L = L.cwiseAbs(); + + //---- Check if the ray only crosses one voxel + Vector3i vid = m_Image->Find(in); + if (vid == m_Image->Find(out)) { + ray.AddElement(m_Image->Map(vid), s.norm()); return ray; + } + + //---- Otherwise, loop until ray is finished + int id; + float d; + while (l > 0) { + + d = offset.minCoeff(&id); + + if (m_Image->IsInsideGrid(vid)) { + ray.AddElement(m_Image->Map(vid), d * m_scale(id)); + } + + // nan check // + // if(unlikely(!isFinite(d * scale(id)))) { + // std:: cout << "NAN in raytracer\n"; + // exit(1); + // } + + vid(id) += (int)fast_sign(s(id)); + + l -= d; + offset.array() -= d; + offset(id) = fmin(L(id), l); + } + return ray; } // 20150528 SV for absorbed muons -VoxRaytracer::RayData VoxRaytracer::TraceLine(const HLine3f &line) const -{ - RayData ray; +VoxRaytracer::RayData VoxRaytracer::TraceLine(const HLine3f &line) const { + RayData ray; - Vector4f pt = m_Image->GetLocalPoint(line.origin); - Vector4f s = m_Image->GetLocalPoint(line.direction); + Vector4f pt = m_Image->GetLocalPoint(line.origin); + Vector4f s = m_Image->GetLocalPoint(line.direction); - float l = s.head(3).norm(); - // intersection between track and grid when spacing is +1 - Vector3f L(l/s(0), l/s(1), l/s(2)); + float l = s.head(3).norm(); + // intersection between track and grid when spacing is +1 + Vector3f L(l / s(0), l / s(1), l / s(2)); - // RayTracer works with a grid of interspace +1 - // Vector3f scale; // FIXXX - // scale << (m_Image->GetWorldMatrix() * Vector4f(1,0,0,0)).norm(), - // (m_Image->GetWorldMatrix() * Vector4f(0,1,0,0)).norm(), - // (m_Image->GetWorldMatrix() * Vector4f(0,0,1,0)).norm(); + // RayTracer works with a grid of interspace +1 + // Vector3f scale; // FIXXX + // scale << (m_Image->GetWorldMatrix() * Vector4f(1,0,0,0)).norm(), + // (m_Image->GetWorldMatrix() * Vector4f(0,1,0,0)).norm(), + // (m_Image->GetWorldMatrix() * Vector4f(0,0,1,0)).norm(); - // offset is the fraction of the segment between grid lines when origin is insiede voxel - // cwiseAbs for having positive distances - Vector3f offset; - for(int i=0;i<3;++i) - offset(i) = (s(i)>=0) - (pt(i)-floor(pt(i))); - offset = offset.cwiseProduct(L).cwiseAbs(); - L = L.cwiseAbs(); + // offset is the fraction of the segment between grid lines when origin is + // insiede voxel cwiseAbs for having positive distances + Vector3f offset; + for (int i = 0; i < 3; ++i) + offset(i) = (s(i) >= 0) - (pt(i) - floor(pt(i))); + offset = offset.cwiseProduct(L).cwiseAbs(); + L = L.cwiseAbs(); - int id; float d; - Vector3i vid = m_Image->Find(line.origin); - while(m_Image->IsInsideGrid(vid)) - { - // minimun coefficient of offset: id is the coordinate, d is the value - // dependig on which grid line horizontal or vertical it is first intercept - d = offset.minCoeff(&id); + int id; + float d; + Vector3i vid = m_Image->Find(line.origin); + while (m_Image->IsInsideGrid(vid)) { + // minimun coefficient of offset: id is the coordinate, d is the value + // dependig on which grid line horizontal or vertical it is first intercept + d = offset.minCoeff(&id); - // add Lij to ray - ray.AddElement(m_Image->Map(vid), d * m_scale(id) ); + // add Lij to ray + ray.AddElement(m_Image->Map(vid), d * m_scale(id)); - // move to the next voxel - vid(id) += (int)fast_sign(s(id)); + // move to the next voxel + vid(id) += (int)fast_sign(s(id)); - offset.array() -= d; - offset(id) = L(id); - } - return ray; + offset.array() -= d; + offset(id) = L(id); + } + return ray; } -} +} // namespace uLib diff --git a/src/Root/Linkdef.h b/src/Root/Linkdef.h index 35fd04d..911ab50 100644 --- a/src/Root/Linkdef.h +++ b/src/Root/Linkdef.h @@ -23,8 +23,6 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_ROOT_LINKDEF_H #define U_ROOT_LINKDEF_H @@ -35,52 +33,21 @@ #pragma link off all functions; #pragma link C++ nestedclasses; -#pragma link C++ class TestTObject+; - using namespace ROOT::Mutom; -#pragma link C++ class ROOT::Math::Cartesian2D+; -#pragma link C++ class ROOT::Math::Cartesian2D+; -#pragma link C++ class ROOT::Math::Cartesian2D+; - -#pragma link C++ class ROOT::Math::Cartesian3D+; -#pragma link C++ class ROOT::Math::Cartesian3D+; -#pragma link C++ class ROOT::Math::Cartesian3D+; - -#pragma link C++ class Vector2i+; -#pragma link C++ class Vector2f+; -#pragma link C++ class Vector2d+; - -#pragma link C++ class Vector3i+; -#pragma link C++ class Vector3f+; -#pragma link C++ class Vector3d+; - -#pragma link C++ typedef Matrix3i; -#pragma link C++ typedef Matrix3f; -#pragma link C++ typedef Matrix3d; - -#pragma link C++ class Line3f+; -#pragma link C++ class Line3d+; - -#pragma link C++ class MuonTrack+; -#pragma link C++ class MuonScatter+; -#pragma link C++ function MuonScatter::p_mean() const; +#pragma link C++ class ROOT::Math::Cartesian3D < int> + ; +#pragma link C++ class ROOT::Math::Cartesian3D < float> + ; +#pragma link C++ class ROOT::Math::Cartesian3D < double> + ; // #pragma link C++ class DetectorChamber+; -#pragma link C++ class HitRaw+; -#pragma link C++ function HitRaw::Chm() const; -#pragma link C++ function HitRaw::Rob() const; -#pragma link C++ function HitRaw::Tdc() const; -#pragma link C++ function HitRaw::Ch() const; - -#pragma link C++ class muCastorMCTrack+; -#pragma link C++ class muCastorHit+; -#pragma link C++ class muCastorInfo+; -#pragma link C++ class muCastorSkinHit+; -#pragma link C++ class muCastorPrimaryVertex+; -#pragma link C++ class muCastorMuDetDIGI+; -#pragma link C++ class SkinDetectorWriter+; +#pragma link C++ class muCastorMCTrack + ; +#pragma link C++ class muCastorHit + ; +#pragma link C++ class muCastorInfo + ; +#pragma link C++ class muCastorSkinHit + ; +#pragma link C++ class muCastorPrimaryVertex + ; +#pragma link C++ class muCastorMuDetDIGI + ; +#pragma link C++ class SkinDetectorWriter + ; #endif // __CINT__ diff --git a/uLib.files b/uLib.files index b70784f..f495489 100644 --- a/uLib.files +++ b/uLib.files @@ -30,7 +30,6 @@ src/Core/testing/Flags.h src/Core/testing/ObjectCopyTest.cpp src/Core/testing/ObjectFlagsTest.cpp src/Core/testing/ObjectParametersTest.cpp -src/Core/testing/ObjectPropableTest.cpp src/Core/testing/OptionsTest.cpp src/Core/testing/PropertiesTest.cpp src/Core/testing/SerializeDreadDiamondTest.cpp @@ -59,7 +58,6 @@ src/Core/Macros.h src/Core/Mpl.h src/Core/Object.cpp src/Core/Object.h -src/Core/ObjectProps.h src/Core/Options.cpp src/Core/Options.h src/Core/Serializable.cpp From 7ded15d59695df9f66b0a7b21ba2010b15104b3e Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Sat, 21 Feb 2026 15:40:21 +0000 Subject: [PATCH 04/19] chore: remove LTK, MOC, and QVTKViewport2 components. --- src/Gui/Qt/QVTKViewport2/Makefile.am | 35 - src/Gui/Qt/QVTKViewport2/QVTKViewport2.pro | 18 - .../Qt/QVTKViewport2/QVTKViewport2.pro.user | 453 ------ src/Gui/Qt/QVTKViewport2/main.cpp | 38 - src/Gui/Qt/QVTKViewport2/vtkviewport.cpp | 41 - src/Gui/Qt/QVTKViewport2/vtkviewport.h | 49 - src/Gui/Qt/QVTKViewport2/vtkviewport.ui | 32 - src/ltk/CMakeLists.txt | 12 - src/ltk/DenseMatrix.h | 111 -- src/ltk/Makefile.am | 6 - src/ltk/Object.c | 18 - src/ltk/Object.h | 78 - src/ltk/Vector.h | 195 --- src/ltk/container.h | 43 - src/ltk/ltk.h | 32 - src/ltk/ltk_bridge/ltkb.c | 339 ----- src/ltk/ltk_bridge/ltkb_test.c | 40 - src/ltk/ltk_bridge/setup.sh | 21 - src/ltk/ltkdebug.c | 4 - src/ltk/ltkdebug.h | 105 -- src/ltk/ltkmacros.h | 61 - src/ltk/ltktypes.h | 127 -- src/ltk/main.c | 72 - src/ltk/templates.c | 92 -- src/ltk/templates.h | 303 ---- src/ltk/test_comma.h | 117 -- src/ltk/testing/Makefile.am | 37 - src/ltk/testing/Object-cc.cpp | 40 - src/ltk/testing/Object.c | 11 - src/ltk/testing/Vector-cc.cpp | 79 -- src/ltk/testing/Vector.c | 14 - src/ltk/testing/testing-prototype.h | 37 - src/utils/moc/Makefile | 24 - src/utils/moc/moc_actions.h | 92 -- src/utils/moc/parse.y | 1257 ----------------- src/utils/moc/sample.cpp | 51 - src/utils/moc/scan.l | 252 ---- 37 files changed, 4336 deletions(-) delete mode 100644 src/Gui/Qt/QVTKViewport2/Makefile.am delete mode 100644 src/Gui/Qt/QVTKViewport2/QVTKViewport2.pro delete mode 100644 src/Gui/Qt/QVTKViewport2/QVTKViewport2.pro.user delete mode 100644 src/Gui/Qt/QVTKViewport2/main.cpp delete mode 100644 src/Gui/Qt/QVTKViewport2/vtkviewport.cpp delete mode 100644 src/Gui/Qt/QVTKViewport2/vtkviewport.h delete mode 100644 src/Gui/Qt/QVTKViewport2/vtkviewport.ui delete mode 100644 src/ltk/CMakeLists.txt delete mode 100644 src/ltk/DenseMatrix.h delete mode 100644 src/ltk/Makefile.am delete mode 100644 src/ltk/Object.c delete mode 100644 src/ltk/Object.h delete mode 100644 src/ltk/Vector.h delete mode 100644 src/ltk/container.h delete mode 100644 src/ltk/ltk.h delete mode 100644 src/ltk/ltk_bridge/ltkb.c delete mode 100644 src/ltk/ltk_bridge/ltkb_test.c delete mode 100755 src/ltk/ltk_bridge/setup.sh delete mode 100644 src/ltk/ltkdebug.c delete mode 100755 src/ltk/ltkdebug.h delete mode 100644 src/ltk/ltkmacros.h delete mode 100644 src/ltk/ltktypes.h delete mode 100644 src/ltk/main.c delete mode 100644 src/ltk/templates.c delete mode 100644 src/ltk/templates.h delete mode 100644 src/ltk/test_comma.h delete mode 100644 src/ltk/testing/Makefile.am delete mode 100644 src/ltk/testing/Object-cc.cpp delete mode 100644 src/ltk/testing/Object.c delete mode 100644 src/ltk/testing/Vector-cc.cpp delete mode 100644 src/ltk/testing/Vector.c delete mode 100644 src/ltk/testing/testing-prototype.h delete mode 100644 src/utils/moc/Makefile delete mode 100644 src/utils/moc/moc_actions.h delete mode 100644 src/utils/moc/parse.y delete mode 100644 src/utils/moc/sample.cpp delete mode 100644 src/utils/moc/scan.l diff --git a/src/Gui/Qt/QVTKViewport2/Makefile.am b/src/Gui/Qt/QVTKViewport2/Makefile.am deleted file mode 100644 index c6e1b8c..0000000 --- a/src/Gui/Qt/QVTKViewport2/Makefile.am +++ /dev/null @@ -1,35 +0,0 @@ -# SUBDIRS = . - -include $(top_srcdir)/Common.am - -DISTSOURCES = vtkviewport.cpp main.cpp -DISTHEADERS_MOC = -DISTHEADERS_NO_MOC = -FORMS = vtkviewport.ui - -FORMHEADERS = $(FORMS:.ui=.h) -MOC_CC = $(FORMS:.ui=.moc.cpp) $(DISTHEADERS_MOC:.h=.moc.cpp) - -bin_PROGRAMS = QTVtkViewport - -BUILT_SOURCES = $(FORMHEADERS) $(MOC_CC) -CLEANFILES = $(BUILT_SOURCES) - -EXTRA_DIST = $(FORMS) -QTVtkViewport_SOURCES = $(DISTSOURCES) $(DISTHEADERS_MOC) $(DISTHEADERS_NO_MOC) -nodist_QTVtkViewport_SOURCES = $(MOC_CC) - -QTVtkViewport_LDADD = $(top_srcdir)/libmutom.la - - -.ui.h: $(FORMS) - $(UIC) -o ui_$@ $< - -.ui.hpp: $(FORMS_HPP) - $(UIC) -o $@ $< - -.h.moc.cpp: - $(MOC) -o $@ $< - - -SUFFIXES = .h .ui .moc.cpp diff --git a/src/Gui/Qt/QVTKViewport2/QVTKViewport2.pro b/src/Gui/Qt/QVTKViewport2/QVTKViewport2.pro deleted file mode 100644 index 6a3a510..0000000 --- a/src/Gui/Qt/QVTKViewport2/QVTKViewport2.pro +++ /dev/null @@ -1,18 +0,0 @@ -#------------------------------------------------- -# -# Project created by QtCreator 2012-08-30T18:59:53 -# -#------------------------------------------------- - 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- Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#include -#include "vtkviewport.h" - -int main(int argc, char *argv[]) -{ - QApplication a(argc, argv); - VtkViewport w; - w.show(); - - return a.exec(); -} diff --git a/src/Gui/Qt/QVTKViewport2/vtkviewport.cpp b/src/Gui/Qt/QVTKViewport2/vtkviewport.cpp deleted file mode 100644 index 77629da..0000000 --- a/src/Gui/Qt/QVTKViewport2/vtkviewport.cpp +++ /dev/null @@ -1,41 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#include "vtkviewport.h" -#include "ui_vtkviewport.h" - -VtkViewport::VtkViewport(QWidget *parent) : - QWidget(parent), - ui(new Ui::VtkViewport) -{ - ui->setupUi(this); -} - -VtkViewport::~VtkViewport() -{ - delete ui; -} diff --git a/src/Gui/Qt/QVTKViewport2/vtkviewport.h b/src/Gui/Qt/QVTKViewport2/vtkviewport.h deleted file mode 100644 index 09c2d7d..0000000 --- a/src/Gui/Qt/QVTKViewport2/vtkviewport.h +++ /dev/null @@ -1,49 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#ifndef VTKVIEWPORT_H -#define VTKVIEWPORT_H - -#include - -namespace Ui { -class VtkViewport; -} - -class VtkViewport : public QWidget -{ - Q_OBJECT - -public: - explicit VtkViewport(QWidget *parent = 0); - ~VtkViewport(); - -private: - Ui::VtkViewport *ui; -}; - -#endif // VTKVIEWPORT_H diff --git a/src/Gui/Qt/QVTKViewport2/vtkviewport.ui b/src/Gui/Qt/QVTKViewport2/vtkviewport.ui deleted file mode 100644 index 095019b..0000000 --- a/src/Gui/Qt/QVTKViewport2/vtkviewport.ui +++ /dev/null @@ -1,32 +0,0 @@ - - - VtkViewport - - - - 0 - 0 - 580 - 536 - - - - Form - - - - - 140 - 170 - 161 - 41 - - - - Hello World ! - - - - - - diff --git a/src/ltk/CMakeLists.txt b/src/ltk/CMakeLists.txt deleted file mode 100644 index 8921da0..0000000 --- a/src/ltk/CMakeLists.txt +++ /dev/null @@ -1,12 +0,0 @@ - -set(HEADERS - ltktypes.h - ltkmacros.h - ltkdebug.h -) - -SET(SOURCES) - -set(LIBRARIES) - -uLib_add_shared_library(${uLib-module}) diff --git a/src/ltk/DenseMatrix.h b/src/ltk/DenseMatrix.h deleted file mode 100644 index 1214526..0000000 --- a/src/ltk/DenseMatrix.h +++ /dev/null @@ -1,111 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - - -#ifndef DENSEMATRIX_H -#define DENSEMATRIX_H - -#include "templates.h" -#include "Vector.h" - -BEGIN_NAMESPACE(ltk) - -/* ////////////////////////////////////////////////////////////////////////// */ -/* //////////////////////////// MATRIX ////////////////////////////////////// */ -/* ////////////////////////////////////////////////////////////////////////// */ - -C_BEGIN_DECLS - -#define LTK_MATRIX_DECLARE_FUNC(Type,ltkType,Class_name,csize,rsize) \ - inline Type ltkType##_##Class_name##_get(ltkType m, \ - unsigned int c, \ - unsigned int r) \ - { \ - assert(c + r * csize < csize * rsize); \ - return *((ltkType)m + c + r * csize); \ - } \ - inline void ltkType##_##Class_name##_set(ltkType m, \ - unsigned int c, \ - unsigned int r, \ - Type t) \ - { \ - assert (c + r * csize < csize * rsize); \ - *((ltkType)m + c + r * csize) = t; \ - } - - -#define LTK_MATRIX_DECLARE(Type,Type_name,csize,rsize) \ - typedef Type * Type_name; \ - LTK_SIMPLE_ALLOC_FUNC(Type, Type_name,ltk_matrix,csize * rsize) \ - LTK_MATRIX_DECLARE_FUNC(Type,Type_name,ltk_matrix,csize,rsize) - -C_END_DECLS - -#ifdef __cplusplus - -template class ltkDenseMatrix -: public ltkAbstractBuffer< T, csize * rsize > -{ -protected: - typedef ltkDenseMatrix ThisClass; - typedef ltkAbstractBuffer BaseClass; -public: - ltkDenseMatrix() {} - ~ltkDenseMatrix() { } - - inline T* getBuffer() { - return (T*)m_buffer; - } - inline const T* getBuffer() const { - return (const T*)m_buffer; - } - - ThisClass & operator =(const ThisClass &src) { - if (this != &src) { - CType_ltk_matrix_copy(m_buffer, (const CType) src.getBuffer()); - } - } - - typedef struct BaseClass::CommaInit CommaInit; - inline CommaInit operator = (T scalar) { - return this->operator <<(scalar); - } - - -private: - LTK_MATRIX_DECLARE(T,CType, csize, rsize); - T m_buffer [csize * rsize]; -}; - - - - -#endif // __cplusplus - -END_NAMESPACE - -#endif // DENSEMATRIX_H diff --git a/src/ltk/Makefile.am b/src/ltk/Makefile.am deleted file mode 100644 index 5f0e5d0..0000000 --- a/src/ltk/Makefile.am +++ /dev/null @@ -1,6 +0,0 @@ -include $(top_srcdir)/Common.am - -library_includedir = $(includedir)/libmutom-${PACKAGE_VERSION}/ltk -library_include_HEADERS = ltktypes.h \ - ltkmacros.h \ - ltkdebug.h diff --git a/src/ltk/Object.c b/src/ltk/Object.c deleted file mode 100644 index 6269c9a..0000000 --- a/src/ltk/Object.c +++ /dev/null @@ -1,18 +0,0 @@ -#include "Object.h" - - -static const struct _ltkObjectClass { - size_t class_size; - void (* constructor)(struct _Object *); - void (* destructor) (struct _Object *); - int (* GetElement) (struct _Object *); -} _ObjectClassInstance; - -const struct _ltkObjectClass *ltkObjectClass = &_ObjectClassInstance; - -ltkPointer Object_new(struct _ObjectClass klass) -{ - struct _Object *ob = (struct _Object)malloc(klass->class_size); - klass->constructor(ob); - return ob; -} diff --git a/src/ltk/Object.h b/src/ltk/Object.h deleted file mode 100644 index a39a87a..0000000 --- a/src/ltk/Object.h +++ /dev/null @@ -1,78 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#ifndef OBJECT_H -#define OBJECT_H - -#include // for std allocator // -#include // for memcpy // -#include - -#include "templates.h" - -BEGIN_NAMESPACE(ltk) - - -C_BEGIN_DECLS - -struct _ltkObject -{ - int element; -}; - -struct _ltkObjectClass { - size_t class_size; - void (* constructor)(struct _ltkObject *); - void (* destructor) (struct _ltkObject *); - int (* GetElement) (struct _ltkObject *); -}; - -struct _ltkObject *ltk_object_new() -{ - return NULL; -} - - -C_END_DECLS - -#ifdef __cplusplus - -class Object -{ - struct _ltkObject *d; - typedef struct _ltkObject ObjectType; - public: - Object() : d(new ObjectType()) { d->element = 5552368; } - int GetElement() { return d->element; } -}; - -#endif - - -END_NAMESPACE - -#endif //OBJECT_H diff --git a/src/ltk/Vector.h b/src/ltk/Vector.h deleted file mode 100644 index 229295b..0000000 --- a/src/ltk/Vector.h +++ /dev/null @@ -1,195 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -/* - * File: denseVector.h - * Author: andrea - * - * Created on July 6, 2012, 3:41 PM - */ - -#ifndef VECTOR_H -#define VECTOR_H - -#include // for std allocator // -#include // for memcpy // -#include - -#include "templates.h" - -BEGIN_NAMESPACE(ltk) - -/* ////////////////////////////////////////////////////////////////////////// */ -/* //////////////////////////// VECTOR ///////////////////////////////////// */ -/* ////////////////////////////////////////////////////////////////////////// */ - -C_BEGIN_DECLS - -#define LTK_VECTOR_DECLARE(Type,Type_name,size) \ - typedef Type *Type_name; \ - LTK_SIMPLE_ALLOC_FUNC(Type,Type_name,ltk_vector,size) \ - inline unsigned int Type_name##_ltk_vector_size() { return size; } \ - inline Type Type_name##_ltk_vector_get(Type_name vector, unsigned int i) \ - { return *(vector+i); } \ - inline void Type_name##_ltk_vector_set(Type_name vector, unsigned int i, \ - Type data) { *(vector+i) = data; } - -C_END_DECLS - -#ifdef __cplusplus - -template class ltkVector -: public ltkAbstractBuffer< T, size > -{ - T m_vector [size]; -protected: - typedef ltkVector ThisClass; - typedef ltkAbstractBuffer BaseClass; -public: - ltkVector() {} - ltkVector(const ltkVector ©) { - CType_ltk_vector_copy(m_vector, (const CType) copy.getBuffer()); - } - - virtual ~ltkVector() { } - - inline unsigned int getSize() const { - return size; - } - inline T* getBuffer() { - return (T*)m_vector; - } - inline const T* getBuffer() const { - return (const T*)m_vector; - } - - - - ThisClass & operator =(const ThisClass &src) { - if (this != &src) { - CType_ltk_vector_copy(m_vector, (const CType) src.getBuffer()); - } - } - - typedef struct BaseClass::CommaInit CommaInit; - inline CommaInit operator = (T scalar) { - return this->operator <<(scalar); - } - - // MATH // - inline bool operator ==(const ThisClass &in) { - int test = 0; - for (int i = 0; i < size; ++i) test += this->at(i) != in(i); - return test == 0; - } - - inline bool operator !=(const ThisClass &in) { - return !this->operator ==(in); - } - - inline void operator +=(const ThisClass &in) { - for (int i = 0; i < size; ++i) this->at(i) += in(i); - } - inline void operator -=(const ThisClass &in) { - for (int i = 0; i < size; ++i) this->at(i) -= in(i); - } - inline void operator *=(const ThisClass &in) { - for (int i = 0; i < size; ++i) this->at(i) *= in(i); - } - inline void operator /=(const ThisClass &in) { - for (int i = 0; i < size; ++i) this->at(i) /= in(i); - } - - inline void operator +=(const T t) { - for (int i = 0; i < size; ++i) this->at(i) += t; - } - inline void operator -=(const T t) { - for (int i = 0; i < size; ++i) this->at(i) -= t; - } - inline void operator *=(const T t) { - for (int i = 0; i < size; ++i) this->at(i) *= t; - } - inline void operator /=(const T t) { - for (int i = 0; i < size; ++i) this->at(i) /= t; - } - - inline ThisClass & operator + (const ThisClass &in) { - ThisClass *out = new ThisClass(); - for (int i = 0; i < size; ++i) out->at(i) = this->at(i) + in(i); - return *out; - } - inline ThisClass & operator - (const ThisClass &in) { - ThisClass *out = new ThisClass(); - for (int i = 0; i < size; ++i) out->at(i) = this->at(i) - in(i); - return *out; - } - - // fix with constructor and product null element ------------- // - inline T operator * (const ThisClass &in) { - T out = 0; - for (int i = 0; i < size; ++i) out += this->at(i) * in(i); - return out; - } - inline T operator / (const ThisClass &in) { - T out = 0; - for (int i = 0; i < size; ++i) out += this->at(i) / in(i); - return out; - } - // ------------------------------------------------------------- // - - inline ThisClass & operator +(const T t) { - ThisClass *out = new ThisClass(); - for (int i = 0; i < size; ++i) out->at(i) = this->at(i) + t; - return *out; - } - inline ThisClass & operator -(const T t) { - ThisClass *out = new ThisClass(); - for (int i = 0; i < size; ++i) out->at(i) = this->at(i) - t; - return *out; - } - inline ThisClass & operator *(const T t) { - ThisClass *out = new ThisClass(); - for (int i = 0; i < size; ++i) out->at(i) = this->at(i) * t; - return *out; - } - inline ThisClass & operator /(const T t) { - ThisClass *out = new ThisClass(); - for (int i = 0; i < size; ++i) out->at(i) = this->at(i) / t; - return *out; - } -private: - LTK_VECTOR_DECLARE(T,CType, size) -}; - -#endif // __cplusplus - - - - -END_NAMESPACE // ltk -#endif /* DENSEVECTOR_H */ - diff --git a/src/ltk/container.h b/src/ltk/container.h deleted file mode 100644 index 58dbdc7..0000000 --- a/src/ltk/container.h +++ /dev/null @@ -1,43 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -/* - * File: comma_init.h - * Author: andrea - * - * Created on May 24, 2012, 3:12 PM - */ - -#ifndef CONTAINER_H -#define CONTAINER_H - -#include - - - -#endif /* CONTAINER_H */ - diff --git a/src/ltk/ltk.h b/src/ltk/ltk.h deleted file mode 100644 index 38a16f2..0000000 --- a/src/ltk/ltk.h +++ /dev/null @@ -1,32 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - - - -#include "templates.h" -#include "Vector.h" -#include "DenseMatrix.h" diff --git a/src/ltk/ltk_bridge/ltkb.c b/src/ltk/ltk_bridge/ltkb.c deleted file mode 100644 index f1b3d91..0000000 --- a/src/ltk/ltk_bridge/ltkb.c +++ /dev/null @@ -1,339 +0,0 @@ -//#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#ifdef MODVERSIONS -# include -#endif -#include -#include -#include - - - -/* methods of the character device */ -static int ltkb_open(struct inode *inode, struct file *filp); -static int ltkb_release(struct inode *inode, struct file *filp); -static int ltkb_mmap(struct file *filp, struct vm_area_struct *vma); -static ssize_t ltkb_read(struct file *filp, - char __user *buffer, - size_t count, - loff_t *offp); -static ssize_t ltkb_write(struct file *filp, - const char __user *buffer, - size_t count, - loff_t *offp); - - -// internal data -// length of the two memory areas -#define NPAGES 16 -// pointer to the vmalloc'd area - alway page aligned -static int *vmalloc_area; -// pointer to the kmalloc'd area, rounded up to a page boundary -static int *kmalloc_area; -// original pointer for kmalloc'd area as returned by kmalloc -static void *kmalloc_ptr; - - -#define BUF_LEN 80 -static int Device_Open = 0; - -static char Message[BUF_LEN]; -/* - * How far did the process reading the message get? - * Useful if the message is larger than the size of the - * buffer we get to fill in device_read. - */ -static char *Message_Ptr; - - -struct ltkb_dev { - struct cdev cdev; // device structure - struct semaphore semaphore; // lock semaphore for race control - char *message; // message passing from/to user - unsigned int size; // size of data stored - unsigned int acl_key; // user access control -}; - -struct ltkb_dev *_ltkb_devices; // devices array // - - - - - -/////// OPEN AND RELEASE /////////////////////////////////////////////////////// -static int ltkb_open(struct inode *inode, struct file *filp) -{ - // insert cdev data in dev structure and file->private_data // - struct ltkb_dev *dev; - dev = container_of (inode->i_cdev, struct ltkb_dev, cdev); - - // this shares dev for all methods // - filp->private_data = dev; - - pr_debug("ltk bridge opened"); - return 0; -} -/* character device last close method */ -static int ltkb_release(struct inode *inode, struct file *filp) -{ - pr_debug("ltk bridge released"); - return 0; -} -// -------------------------------------------------------------------------- // - - - -// kmalloc instancer // -int ltkb_kmem(struct file *filp, struct vm_area_struct *vma) -{ - int ret; - long length = vma->vm_end - vma->vm_start; - - /* check length - do not allow larger mappings than the number of - pages allocated */ - if (length > NPAGES * PAGE_SIZE) - return -EIO; - - /* map the whole physically contiguous area in one piece */ - if ((ret = remap_pfn_range(vma, - vma->vm_start, - virt_to_phys((void *)kmalloc_area) >> PAGE_SHIFT, - length, - vma->vm_page_prot)) < 0) { - return ret; - } - return 0; -} -// vmalloc instancer // -int ltkb_vmem(struct file *filp, struct vm_area_struct *vma) -{ - int ret; - long length = vma->vm_end - vma->vm_start; - unsigned long start = vma->vm_start; - char *vmalloc_area_ptr = (char *)vmalloc_area; - unsigned long pfn; - - /* check length - do not allow larger mappings than the number of - pages allocated */ - if (length > NPAGES * PAGE_SIZE) - return -EIO; - - /* loop over all pages, map it page individually */ - while (length > 0) { - pfn = vmalloc_to_pfn(vmalloc_area_ptr); - if ((ret = remap_pfn_range(vma, start, pfn, PAGE_SIZE, - PAGE_SHARED)) < 0) { - return ret; - } - start += PAGE_SIZE; - vmalloc_area_ptr += PAGE_SIZE; - length -= PAGE_SIZE; - } - return 0; -} - - - -// mmap function // -static int ltkb_mmap(struct file *filp, struct vm_area_struct *vma) -{ - /* at offset 0 we map the vmalloc'd area */ - if (vma->vm_pgoff == 0) { - return ltkb_vmem(filp, vma); - } - /* at offset NPAGES we map the kmalloc'd area */ - if (vma->vm_pgoff == NPAGES) { - return ltkb_kmem(filp, vma); - } - /* at any other offset we return an error */ - return -EIO; -} - - - - -////////////// CHAR DEVICE READ/WRITE ///////////////////////////////////////// -static ssize_t ltkb_read(struct file *filp, /* see include/linux/fs.h */ - char __user *buffer, /* buffer to fill with data */ - size_t length, /* length of the buffer */ - loff_t * offset) -{ - -#ifdef _DEBUG - printk(KERN_INFO "device_read(%p,%s,%d)", filp, buffer, (int)length); -#endif - - return 0; -} - -static ssize_t ltkb_write(struct file *filp, - const char __user *buffer, - size_t length, - loff_t * offset) -{ -#ifdef _DEBUG - printk(KERN_INFO "device_write(%p,%s,%d)", filp, buffer, (int)length); -#endif - return 0; -} -// ------------------------------------------------------------------------- // - - -#define LTKB_IOC_HEADER 'b' - -#define LTKB_IOC_RESET _IO(LTKB_IOC_HEADER, 0) -#define LTKB_IOC_PING _IOWR(LTKB_IOC_HEADER, 1, char) - -#define LTKB_IOC_MAXNR 1 - -////////////// IOCTL /////////////////////////////////////////////////////////// -int ltkb_ioctl(struct inode *inode, struct file *filp, - unsigned int cmd, unsigned long arg) -{ - char c = 0; - int retval = 0; - - /* - * extract the type and number bitfields, and don't decode - * wrong cmds: return ENOTTY (inappropriate ioctl) before access_ok() - */ - if (_IOC_TYPE(cmd) != LTKB_IOC_HEADER) return -ENOTTY; - if (_IOC_NR(cmd) > LTKB_IOC_MAXNR) return -ENOTTY; - - // TODO user access control // - - - switch(cmd) { - case LTKB_IOC_RESET: - if(!capable(CAP_SYS_ADMIN)) - return -EPERM; - // TODO free all memory mapping// - break; - case LTKB_IOC_PING: - retval = __get_user(c,(char __user *)arg); - c++; - retval = __put_user(c,(char __user *)arg); - break; - default: - return -ENOTTY; - } - return retval; - -} -// ------------------------------------------------------------------------- // - - - - - -#ifndef LTKB_MAJOR -#define LTKB_MAJOR 0 -#endif - -#ifndef LTKB_NR_DEVS -#define LTKB_NR_DEVS 4 -#endif - -#ifndef LTKB_DEVICE_NAME -#define LTKB_DEVICE_NAME "ltkb" -#endif - - - -/* the file operations, i.e. all character device methods */ -static struct file_operations ltkb_fops = { - .open = ltkb_open, - .release = ltkb_release, - .read = ltkb_read, - .write = ltkb_write, - .ioctl = ltkb_ioctl, - .mmap = ltkb_mmap, - .owner = THIS_MODULE, -}; - -static int _ltkb_major_number = LTKB_MAJOR; - -// Module init function //////////////////////////////////////////////////////// -static int __init ltkb_init(void) -{ - int i,ret = 0; - dev_t dev = 0; - - // REGISTER DEVICE // - if(_ltkb_major_number) - { - dev = MKDEV(_ltkb_major_number,0); - ret = register_chrdev_region(dev, LTKB_NR_DEVS, LTKB_DEVICE_NAME); - } - else { - ret = alloc_chrdev_region(&dev, 0, LTKB_NR_DEVS, LTKB_DEVICE_NAME ); - _ltkb_major_number = MAJOR(dev); - } - if (ret < 0) { - printk(KERN_WARNING "could not allocate major number %d for ltkb\n", - _ltkb_major_number); - return ret; - } - - // ALLOCATE DEVICES // - _ltkb_devices = kmalloc( LTKB_NR_DEVS * sizeof(struct ltkb_dev), GFP_KERNEL ); - if(!_ltkb_devices) { - printk(KERN_ERR "error allocating device structure in memory"); - return -ENOMEM; - } - memset(_ltkb_devices, 0, LTKB_NR_DEVS * sizeof(struct ltkb_dev)); - - // SETUP DEVICES // - for (i = 0 ; i < LTKB_NR_DEVS ; i++ ) - { - struct ltkb_dev *dev = &_ltkb_devices[i]; - int devno = MKDEV(_ltkb_major_number, i); - cdev_init (&dev->cdev, <kb_fops); - dev->cdev.owner = THIS_MODULE; - dev->cdev.ops = <kb_fops; - ret = cdev_add(&dev->cdev,devno,1); - if(ret) printk(KERN_NOTICE "Error %d adding ltkb%d device", ret, i); - init_MUTEX(&dev->semaphore); - } - printk( KERN_NOTICE "ltk bridge module loaded"); - return ret; -} - -// module release // -static void __exit ltkb_exit(void) -{ - // remove the character deivce // - int i; - dev_t devno = MKDEV(_ltkb_major_number,0); - if(_ltkb_devices) - { - for(i=0;i -#include -#include -#include -#include -#include -#include -#include - -#define LTKB_IOC_HEADER 'b' - -#define LTKB_IOC_RESET _IO(LTKB_IOC_HEADER, 0) -#define LTKB_IOC_PING _IOWR(LTKB_IOC_HEADER, 1, char) - -#define LTKB_IOC_MAXNR 1 - - -int main(void) -{ - int fd; - - if ((fd=open("ltkb0", O_RDWR|O_SYNC))<0) - { - perror("open"); - exit(-1); - } - - char buffer[200] = "hello"; - write(fd, (void *)&buffer, 6); - - char c = 'a'; - printf("%c ",c); - ioctl(fd, LTKB_IOC_PING, &c); - printf("%c ",c); - ioctl(fd, LTKB_IOC_PING, &c); - printf("%c\n",c); - close(fd); - return(0); -} - diff --git a/src/ltk/ltk_bridge/setup.sh b/src/ltk/ltk_bridge/setup.sh deleted file mode 100755 index 1886632..0000000 --- a/src/ltk/ltk_bridge/setup.sh +++ /dev/null @@ -1,21 +0,0 @@ -#!/bin/sh -module="ltkb" -device="ltkb" -mode="664" - -/sbin/insmod ./$module.ko $* || exit 1 - -rm -f ./${device}[0-3] - -major=$(awk "\$2==\"$module\" {print \$1}" /proc/devices) - -mknod ./${device}0 c $major 0 -mknod ./${device}1 c $major 1 -mknod ./${device}2 c $major 2 -mknod ./${device}3 c $major 3 - -group="mutom" -grep -q '^mutom:' /etc/group || group="adm" - -chgrp $group ./${device}[0-3] -chmod $mode ./${device}[0-3] \ No newline at end of file diff --git a/src/ltk/ltkdebug.c b/src/ltk/ltkdebug.c deleted file mode 100644 index 03b5024..0000000 --- a/src/ltk/ltkdebug.c +++ /dev/null @@ -1,4 +0,0 @@ - -#include "ltkdebug.h" - - diff --git a/src/ltk/ltkdebug.h b/src/ltk/ltkdebug.h deleted file mode 100755 index fe55a04..0000000 --- a/src/ltk/ltkdebug.h +++ /dev/null @@ -1,105 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#ifndef LTKDEBUG_H -#define LTKDEBUG_H - - -#include "ltkmacros.h" -#include "ltktypes.h" - -//! Provide a string for current function, non-concatenatable -#if defined (__GNUC__) || (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 19901L) -# define __func_to_string__ ((const char*) (__func__)) -#else -# define __func_to_string__ ((const char*) ("???")) -#endif - -//! Provide a string for current function in pretty format, non-concatenatable -#if defined (__GNUC__) -# define __pfunc_to_string__ ((const char*) (__PRETTY_FUNCTION__)) -#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 19901L -# define __pfunc_to_string__ ((const char*) (__func__)) -#else -# define __pfunc_to_string__ ((const char*) ("???")) -#endif - - - -//////////////////////////////////////////////////////////////////////////////// -//// Pragma Messages for debug allerts during compilation ///////////////////// -//////////////////////////////////////////////////////////////////////////////// - -#ifdef PRAGMA_MESSAGES -#define DEBUG_DO_PRAGMA(x) _Pragma (#x) -#else -#define DEBUG_DO_PRAGMA(x) ; -#endif - -#define TODO(x) DEBUG_DO_PRAGMA(message ("\n\n [TODO] >> " #x " <<\n")) -#define OPTIMIZE(x) DEBUG_DO_PRAGMA(message ("\n\n [OPTIMIZE] > " #x " <\n")) -#define DUMP(x) DEBUG_DO_PRAGMA(message ("\n\n [DUMP] > " #x " <\n")) - -// ------------------------------------------------------------------------ // - - - -C_BEGIN_DECLS - - -typedef enum -{ - LOG_FLAG_ACTIVE = 1 << 0, - LOG_FLAG_FATAL = 1 << 1, - LOG_LEVEL_ERROR = 1 << 2, - LOG_LEVEL_CRITICAL = 1 << 3, - LOG_LEVEL_WARNING = 1 << 4, - LOG_LEVEL_MESSAGE = 1 << 5, - LOG_LEVEL_INFO = 1 << 6, - LOG_LEVEL_DEBUG = 1 << 7, - LOG_LEVEL_ANNOING = 1 << 8, - LOG_LEVEL_PARANOID = 1 << 9 -} LogLevelFlags; - - - - -void debug_log( - void *handler, - LogLevelFlags flags, - const char *function_name, - const char *message, - ...); - - - -C_END_DECLS - - - - -#endif // LTKDEBUG_H diff --git a/src/ltk/ltkmacros.h b/src/ltk/ltkmacros.h deleted file mode 100644 index c5e921d..0000000 --- a/src/ltk/ltkmacros.h +++ /dev/null @@ -1,61 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -/* - * File: macros.h - * Author: andrea - * - * Created on May 23, 2012, 9:01 AM - */ - -#ifndef LTK_MACROS_H -#define LTK_MACROS_H - -// C code in headers, while including them from C++ -#ifdef __cplusplus - -# define C_BEGIN_DECLS extern "C" { -# define C_END_DECLS } - -#define BEGIN_NAMESPACE(name) namespace name { -#define END_NAMESPACE } - -#else - -# define C_BEGIN_DECLS -# define C_END_DECLS - -#define BEGIN_NAMESPACE(name) -#define END_NAMESPACE - -#endif - - - - -#endif /* MACROS_H */ - diff --git a/src/ltk/ltktypes.h b/src/ltk/ltktypes.h deleted file mode 100644 index c243841..0000000 --- a/src/ltk/ltktypes.h +++ /dev/null @@ -1,127 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#ifndef LTK_TYPE_H -#define LTK_TYPE_H - -#include -#include - -//#include "templates.h" -#include "ltkmacros.h" - -#ifdef __cplusplus -# define LTK_TYPECAST(T, Type) static_cast< T >(Type) -#else -# define LTK_TYPECAST(T, Type) ((T)(Type)) -#endif - - -BEGIN_NAMESPACE(ltk) - -C_BEGIN_DECLS - -/* ////////////////////////////////////////////////////////////////////////// */ -/* //////////////////////////// TYPE DEFINITIONS ////////////////////////// */ -/* ////////////////////////////////////////////////////////////////////////// */ - - -typedef void * Pointer_t; -typedef id_t Id_t; -typedef size_t Size_t; - -#ifndef LTK_DOUBLE_PRECISION -typedef float Real_t; -#else -typedef double Real_t; -#endif - -#define LTK_SIGNED_CHAR_MIN LTK_TYPECAST(signed char, 0x80) -#define LTK_SIGNED_CHAR_MAX LTK_TYPECAST(signed char, 0x7f) - -#define LTK_UNSIGNED_CHAR_MIN LTK_TYPECAST(unsigned char, 0u) -#define LTK_UNSIGNED_CHAR_MAX LTK_TYPECAST(unsigned char, 0xffu) - -#define LTK_SHORT_MIN LTK_TYPECAST(short, 0x8000) -#define LTK_SHORT_MAX LTK_TYPECAST(short, 0x7fff) - -#define LTK_UNSIGNED_SHORT_MIN LTK_TYPECAST(unsigned short, 0u) -#define LTK_UNSIGNED_SHORT_MAX LTK_TYPECAST(unsigned short, 0xffffu) - -#define LTK_INT_MIN LTK_TYPECAST(int, ~(~0u >> 1)) -#define LTK_INT_MAX LTK_TYPECAST(int, ~0u >> 1) - -#define LTK_INT8_MIN LTK_TYPECAST(int8_t, 0x80) -#define LTK_INT8_MAX LTK_TYPECAST(int8_t, 0x7f) - -#define LTK_INT16_MIN LTK_TYPECAST(int16_t, 0x8000u) -#define LTK_INT16_MAX LTK_TYPECAST(int16_t, 0x7fffu) - -#define LTK_UNSIGNED_INT16_MIN LTK_TYPECAST(int16_t, 0u) -#define LTK_UNSIGNED_INT16_MAX LTK_TYPECAST(unsigned int16_t, 0xffffu) - -#define LTK_INT32_MIN LTK_TYPECAST(int32_t, 0x80000000u) -#define LTK_INT32_MAX LTK_TYPECAST(int32_t, 0x7fffffffu) - -#define LTK_UNSIGNED_INT32_MIN LTK_TYPECAST(unsigned int32_t, 0u) -#define LTK_UNSIGNED_INT32_MAX LTK_TYPECAST(unsigned int32_t, 0xffffffffu) - -#define LTK_INT64_MIN LTK_TYPECAST(int64_t, 0x8000000000000000u) -#define LTK_INT64_MAX LTK_TYPECAST(int64_t, 0x7fffffffffffffffu) - -#define LTK_UNSIGNED_INT8_MIN LTK_TYPECAST(int8_t, 0u) -#define LTK_UNSIGNED_INT8_MAX LTK_TYPECAST(int8_t, 0xffu) - -#define LTK_UNSIGNED_INT64_MIN LTK_TYPECAST(unsigned int64_t, 0u) -#define LTK_UNSIGNED_INT64_MAX LTK_TYPECAST(unsigned int64_t, \ - 0xffffffffffffffffu) - -#define LTK_UNSIGNED_INT_MIN LTK_TYPECAST(unsigned int, 0) -#define LTK_UNSIGNED_INT_MAX LTK_TYPECAST(unsigned int, ~0u) - -#define LTK_LONG_MIN LTK_TYPECAST(long, ~(~0ul >> 1)) -#define LTK_LONG_MAX LTK_TYPECAST(long, ~0ul >> 1) - -#define LTK_UNSIGNED_LONG_MIN LTK_TYPECAST(unsigned long, 0ul) -#define LTK_UNSIGNED_LONG_MAX LTK_TYPECAST(unsigned long, ~0ul) - -#define LTK_FLOAT_MIN LTK_TYPECAST(float, -1.0e+38f) -#define LTK_FLOAT_MAX LTK_TYPECAST(float, 1.0e+38f) - -#define LTK_DOUBLE_MIN LTK_TYPECAST(double, -1.0e+299) -#define LTK_DOUBLE_MAX LTK_TYPECAST(double, 1.0e+299) - - - - - -C_END_DECLS - -END_NAMESPACE - - -#endif //TYPE_H diff --git a/src/ltk/main.c b/src/ltk/main.c deleted file mode 100644 index 12c29cd..0000000 --- a/src/ltk/main.c +++ /dev/null @@ -1,72 +0,0 @@ - -#include "DenseMatrix.h" -#include "Vector.h" -#include "Object.h" - -#include "vectormath/simd/instrset.h" - -/* LTK_VECTOR_DECLARE(int,LtkInt4,4) */ - -/* LTK_MATRIX_DECLARE(int,LtkInt2x2,2,2) */ -/* LTK_MATRIX_DECLARE(int,LtkInt4x1,4,1) */ -/* LTK_MATRIX_DECLARE(int,LtkInt4x4,4,4) */ - -int test(int a) { return 0; } - - -int main(void) -{ - - // testing dense matrix // - /****************************************************/ - /* LtkInt2x2 a; */ - /* LtkInt4x1 b; */ - /* LtkInt4x4 c; */ - /* LtkInt4 v, w; */ - /* */ - /* v = LtkInt4_ltk_vector_new (); */ - /* w = LtkInt4_ltk_vector_new (); */ - /* */ - /* int i; */ - /* for (i = 0; i < LtkInt4_ltk_vector_size (); ++i) */ - /* { */ - /* LtkInt4_ltk_vector_set (v, i, 0); */ - /* LtkInt4_ltk_vector_set (w, i, 3); */ - /* } */ - /* */ - /* printf ("v = "); */ - /* for (i = 0; i < 4; ++i) */ - /* printf ("%d ", LtkInt4_ltk_vector_get (v, i)); */ - /* printf ("\n"); */ - /* */ - /* printf ("w = "); */ - /* for (i = 0; i < 4; ++i) */ - /* printf ("%d ", LtkInt4_ltk_vector_get (w, i)); */ - /* printf ("\n"); */ - /****************************************************/ - - // testing intrinsics // - printf("INSTRUCTION SET -> %d\n",INSTRSET); - __m128 aligned_float = _mm_setzero_ps(); - float *p = &aligned_float; - printf("%f,%f,%f,%f\n",p[0],p[1],p[2],p[3]); - - // adder // - __m128 a_1,a_2; - a_1 = _mm_set_ps(3,3,3,3); - a_2 = _mm_set_ps(1,2,3,4); - - - aligned_float = _mm_add_ps(a_1,a_2); - p = &aligned_float; printf("%f,%f,%f,%f\n",p[0],p[1],p[2],p[3]); - - - - // testing Objects // - //LTK_MATRIX_DECLARE(TypeName, type, r, c); - // Object *ob = New(ObjectClass); - // int el = ObjectClass->GetElement(ob); - - - return 0; -} diff --git a/src/ltk/templates.c b/src/ltk/templates.c deleted file mode 100644 index a154d1a..0000000 --- a/src/ltk/templates.c +++ /dev/null @@ -1,92 +0,0 @@ -#include -#include -#include -#include "templates.h" - - -LtkList ltk_list_new() -{ - LtkList list = malloc(sizeof(struct _template_list)); - list->size = 0; - list->start = NULL; - list->end = NULL; - return list; -} - -void ltk_list_nodepush(LtkList list,LtkListNode node) -{ - if(list == NULL) return; - node->next = list->start; - list->start = node; - if(list->end == NULL) list->end = node; - list->size++; -} - -LtkListNode ltk_list_get_start(LtkList list) -{ - if (list==NULL || list->start==NULL) return NULL; - return list->start; -} - -LtkListNode ltk_list_get_end(LtkList list) -{ - if (list==NULL || list->end==NULL) return NULL; - return list->end; -} - -void ltk_list_remove(LtkList list,LtkListNode node) -{ - if (list == NULL || list->start==NULL) return; - struct _template_list_node *node_tofree,*prev; - node_tofree=list->start; - while (node_tofree != node) { - if(node_tofree->next == NULL) return; - prev = node_tofree; - node_tofree = node_tofree->next; - } - if(node_tofree == list->start) list->start = node_tofree->next; - else prev->next = node_tofree->next; - free(node_tofree); -} - -void ltk_list_pop_start(LtkList list) -{ - if (list==NULL || list->start==NULL) return; - struct _template_list_node *nodetofree; - nodetofree=list->start; - list->start = list->start->next; - free(nodetofree); -} - -void ltk_list_pop_end(LtkList list) -{ - if (list==NULL || list->end==NULL) return; - struct _template_list_node *iter; - iter=list->start; - if(iter==list->end) { - free(iter); - list->start = list->end = NULL; - } - else { - while(iter->next!=list->end) iter=iter->next; - free(iter->next); - iter->next = NULL; - list->end = iter; - } - list->size--; -} - -int ltk_list_get_size(LtkList list) -{ - if(list==NULL) return 0; - return list->size; -} - - -LtkListIterator ltk_list_iterator_new(LtkList list) -{ - if(list==NULL || list->start == NULL) return NULL; - return (LtkListIterator)list->start; -} - - diff --git a/src/ltk/templates.h b/src/ltk/templates.h deleted file mode 100644 index 00abd01..0000000 --- a/src/ltk/templates.h +++ /dev/null @@ -1,303 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -/* - * - * Copyright (C) 2012 Andrea Rigoni Garola - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 2 of the License, or (at - * your option) any later version. - * - * This program is distributed in the hope that it will be useful, but - * WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - * - */ - - -#ifndef TEMPLATES_H -#define TEMPLATES_H - -#include // for std allocator // -#include // for memcpy // -#include - -#include "ltkmacros.h" // default environment // -#include "container.h" // TODO !!! // - -#include - - - - - -/* ////////////////////////////////////////////////////////////////////////// */ -/* //////////////////////////// ALLOC FUNCTIONS ///////////////////////////// */ -/* ////////////////////////////////////////////////////////////////////////// */ - -C_BEGIN_DECLS - -//inline ltkPointer ltk_malloc(unsigned int size) { return malloc(size); } -//inline void ltk_free (ltkPointer ptr) { free(ptr); } - -#define LTK_SIMPLE_ALLOC_FUNC(Type, ltkType, Class_name, size) \ - inline ltkType ltkType##_##Class_name##_new() \ - { \ - return LTK_TYPECAST(ltkType, malloc(sizeof(Type) * size)); \ - } \ - inline void ltkType##_##Class_name##_delete(ltkType t) \ - { free(t); } \ - inline void ltkType##_##Class_name##_copy(ltkType dst, const ltkType src) \ - { memcpy((ltkPointer)dst, (ltkPointer)src, sizeof(Type) * size ); } - -C_END_DECLS - - - - - -/* ////////////////////////////////////////////////////////////////////////// */ -/* //////////////////////////// ABSTRACT C BUFFER /////////////////////////// */ -/* ////////////////////////////////////////////////////////////////////////// */ - -C_BEGIN_DECLS - -#define LTK_ABSTRACT_BUFFER_DECLARE_FUNC(Type,ltkType,Class_name,size) \ - inline int ltkType##_##Class_name##_size() { return size; } \ - inline Type ltkType##_##Class_name##_get(ltkType v, unsigned int c) \ - { assert(c < size); return *((ltkType)m + c); } \ - inline void ltkType##_##Class_name##_set(ltkType v, Type t, unsigned int c) \ - { assert(c < size); *((ltkType)m + c) = t; } - -// FINIRE !!! // - -C_END_DECLS - -#ifdef __cplusplus - -template class ltkAbstractBuffer -{ - typedef ltkAbstractBuffer ThisClass; -protected: - typedef T ContentType; - virtual T* getBuffer() = 0; - virtual const T* getBuffer() const = 0; - - struct CommaInit - { - inline explicit CommaInit(ltkAbstractBuffer *container,float s) - : container(container) { - this->index = 0; - this->container->getBuffer()[0] = s; - } - inline CommaInit & operator, (float s) { - this->index++; - assert(index < size); - this->container->getBuffer()[this->index] = s; - return *this; - } - ltkAbstractBuffer *container; - unsigned int index; - }; - -public: - inline CommaInit operator =(T scalar) { - return CommaInit(this, scalar); - } - inline CommaInit operator <<(T scalar) { - return CommaInit(this, scalar); - } - - inline T& at(const unsigned int i) { - return *(this->getBuffer() + i); - } - - inline T & operator[](unsigned int i) { - return *(this->getBuffer() + i); - } - inline const T & operator[](unsigned int i) const { - return *(this->getBuffer() + i); - } - inline T & operator()(unsigned int i) { - return *(this->getBuffer() + i); - } - inline const T & operator()(unsigned int i) const { - return *(this->getBuffer() + i); - } - - -}; - -#endif // __cplusplus - - -/* ////////////////////////////////////////////////////////////////////////// */ -/* //////////////////////////// ARRAY /////////////////////////////////////// */ -/* ////////////////////////////////////////////////////////////////////////// */ - -// COMING SOON // - - - - - - - -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// -/// DO NOT USE ANYTHING AFTER THIS LINE ... EXPERIMENTAL ////////////////// - - - - - - - - - -/* ////////////////////////////////////////////////////////////////////////// */ -/* //////////////////////////// CIRCULAR BUFFER ///////////////////////////// */ -/* ////////////////////////////////////////////////////////////////////////// */ -/* CIRCULAR BUFFER */ - -struct _ltk_template_buffer { - void *pos; - void *head; -}; - -#define LTK_BUFFER_DECLARE(Type, Type_name, size, overlap) \ -typedef struct _ltk_template_buffer *Type_name; \ -inline Type_name Type_name##_ltk_buffer_new() \ -{ Type_name out = (Type_name)ltk_malloc \ - (sizeof(Type) * (size + overlap) + 2); \ - out->head = (void *)out + 2 + overlap * sizeof(Type); \ - out->pos = out->head; \ -return out; } \ -inline void Type_name##_ltk_buffer_free(Type_name buffer) { ltk_free(buffer); }\ - - - -// TO BE CONTINUED.... // - - - - - - - - -///// LtkPTree //////// - -struct _LtkPTreeNode -{ - struct _LtkPTreeNode *parent; -}; -typedef struct _LtkPTreeNode *LtkPtree; - - - - - - - - - - - - -/* - one way list template usable as FIFO or LIFO by macros - Element must be a pointer to a real allocated object. -*/ -// this acts as dummy node, never really instanciated // -struct _template_list_node { - struct _template_list_node *next; -}; -typedef struct _template_list_node *LtkListNode; -#define LTK_LIST_HEADER LtkListNode ltk_list_node_next; - -struct _template_list { - int size; - struct _template_list_node *start; - struct _template_list_node *end; -}; - -typedef struct _template_list *LtkList; -typedef struct _template_list_node *LtkListIterator; - -LtkList ltk_list_new(); -void ltk_list_nodepush(LtkList list,LtkListNode node); -LtkListNode ltk_list_get_start(LtkList list); -LtkListNode ltk_list_get_end(LtkList list); -void ltk_list_remove(LtkList list,LtkListNode node); -void ltk_list_pop_start(LtkList list); -void ltk_list_pop_end(LtkList list); - - -#define LTK_LIST_DECLARE(Type,Type_name) \ - static LtkList (* Type_name##_list_new)(void) = ltk_list_new;\ - void (* Type_name##_list_nodepush)(LtkList list, Type *node) = (void (*)(LtkList, Type *))ltk_list_nodepush; \ - Type * (* Type_name##_list_get_start)(LtkList list) = (Type *(*)(LtkList))ltk_list_get_start; \ - Type * (* Type_name##_list_get_end)(LtkList list) = (Type *(*)(LtkList))ltk_list_get_end; \ - void (* Type_name##_list_remove)(LtkList list, Type *node) = (void (*)(LtkList, Type *))ltk_list_remove; \ - void (* Type_name##_list_pop_start)(LtkList list) = (void (*)(LtkList))ltk_list_pop_start; \ - void (* Type_name##_list_pop_end)(LtkList list) = (void (*)(LtkList))ltk_list_pop_end; - -#define LTK_LIST_DECLARE_KEYACCESS(Type,Type_name,KeyType,key_member_name,key_function) \ - Type * Type_name##_list_key_lookup(LtkList list, KeyType key) { \ - LtkListIterator iter = ltk_list_iterator_new(list); \ - while(iter) { \ - if (key_function( ((Type *)iter)->key_member_name, key )) \ - return (Type *)iter; \ - iter = iter->next; } \ - return NULL; } \ - \ - void Type_name##_list_key_remove(LtkList list, KeyType key) { \ - LtkListNode node = (LtkListNode)Type_name##_list_key_lookup(list,key); \ - if(node) ltk_list_remove(list,node); } \ - - -LtkListIterator ltk_list_iterator_new(LtkList list); - -#endif // TEMPLATES_H diff --git a/src/ltk/test_comma.h b/src/ltk/test_comma.h deleted file mode 100644 index 2d69036..0000000 --- a/src/ltk/test_comma.h +++ /dev/null @@ -1,117 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -/* - * File: test_comma.h - * Author: andrea - * - * Created on May 24, 2012, 4:47 PM - */ - -#ifndef TEST_COMMA_H -#define TEST_COMMA_H - -#include - -struct Vector3 -{ - union - { - struct { float x, y, z; }; - float data[3]; - }; - - struct CommaAssign; - - CommaAssign operator=(float _x) - { - x = _x; - return CommaAssign(this,1); - } - - struct CommaAssign - { - Vector3 *vec3; - int index; - - explicit CommaAssign(Vector3 *vec3, int index) : vec3(vec3) { - this->index = index; - } - CommaAssign operator, (float f) { - vec3->data[index] = f; - return CommaAssign(vec3, index + 1); - } - - }; - -}; - - - -struct Container -{ - union - { - struct { float x, y, z; }; - float data[3]; - }; - - inline float *getBuffer() { - return this->data; - } - - template class CommaAssign - { - private: - T *container; - int index; - - public: - inline explicit CommaAssign(T *container, float s) : container(container) { - this->index = 0; - this->container->getBuffer()[0] = s; - } - - inline CommaAssign& operator, (float s) { - this->index++; - assert(index < size); - this->container->getBuffer()[this->index] = s; - return *this; - } - }; - - CommaAssign operator=(float s) { - return CommaAssign (this, s); - } - -}; - - - - -#endif /* TEST_COMMA_H */ - diff --git a/src/ltk/testing/Makefile.am b/src/ltk/testing/Makefile.am deleted file mode 100644 index 1964340..0000000 --- a/src/ltk/testing/Makefile.am +++ /dev/null @@ -1,37 +0,0 @@ - -include $(top_srcdir)/Common.am - -#AM_DEFAULT_SOURCE_EXT = .cpp - - - -TESTS = LtkDebugTest \ - LtkFunctionToStringTest - -LDADD = ../../../libmutom-0.1.la -check_PROGRAMS = $(TESTS) - - -#################################################### -# Hybrid c/c++ Ltk Specific tests # -#################################################### - -check_PROGRAMS += Vector-test -Vector_test_SOURCES = Vector.c -TESTS += Vector-test - -check_PROGRAMS += Vector-test-cc -Vector_test_cc_SOURCES = Vector-cc.cpp -TESTS += Vector-test-cc - -check_PROGRAMS += Object-test -Object_test_SOURCES = Object.c -TESTS += Object-test - -check_PROGRAMS += Object-test-cc -Object_test_cc_SOURCES = Object-cc.cpp -TESTS += Object-test-cc - -#################################################### - -AM_COLOR_TESTS = always diff --git a/src/ltk/testing/Object-cc.cpp b/src/ltk/testing/Object-cc.cpp deleted file mode 100644 index 011af7f..0000000 --- a/src/ltk/testing/Object-cc.cpp +++ /dev/null @@ -1,40 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#include "testing-prototype.h" -#include "../Object.h" - -using namespace ltk; - -int main() { - BEGIN_TESTING(Object - cc); - - Object ob; - TEST1( ob.GetElement() == 5552368 ); - - END_TESTING; -} diff --git a/src/ltk/testing/Object.c b/src/ltk/testing/Object.c deleted file mode 100644 index 9627bb9..0000000 --- a/src/ltk/testing/Object.c +++ /dev/null @@ -1,11 +0,0 @@ -#include "testing-prototype.h" -#include "../Object.h" - - -int main() { - BEGIN_TESTING(Object); - - struct _Object *ob = Object_new(ObjectClass); - - END_TESTING; -} diff --git a/src/ltk/testing/Vector-cc.cpp b/src/ltk/testing/Vector-cc.cpp deleted file mode 100644 index d0d75fc..0000000 --- a/src/ltk/testing/Vector-cc.cpp +++ /dev/null @@ -1,79 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#include "testing-prototype.h" -#include "../Vector.h" - -using namespace ltk; - -int main() { - BEGIN_TESTING(Vector - cc); - - typedef ltkVector ltkInt4; - - ltkInt4 v, w; - v = 1, 2, 3, 4; - w = v; - - printf("v -> %d,%d,%d,%d\n", v[0], *(v.getBuffer() + 1), v.at(2), v(3)); - - - // test assign operator - TEST1(v == w); - TEST0(v != w); - - // test accessors - TEST1(v[0] == 1); - TEST1(*(v.getBuffer() + 1) == 2); - TEST1(v.at(2) == 3); - TEST1(v(3) == 4); - - // setter - w << 1, 4, 9, 16; - TEST1(w[0] == 1); - TEST1(w[1] == 4); - TEST1(w[2] == 9); - TEST1(w[3] == 16); - - // math operators - v *= v; - w = 1, 4, 9, 16; - TEST1(v == w); - v /= v; - w = 1, 1, 1, 1; - TEST1(v == w); - v += v; - w = 2, 2, 2, 2; - TEST1(v == w); - - v << 1, 1, -1, 1; - w << -1, 1, 1, 1; - TEST0(v * w); - TEST0(v / w); - - END_TESTING; -} diff --git a/src/ltk/testing/Vector.c b/src/ltk/testing/Vector.c deleted file mode 100644 index f7d1ab7..0000000 --- a/src/ltk/testing/Vector.c +++ /dev/null @@ -1,14 +0,0 @@ -#include -#include "testing-prototype.h" -#include "../Vector.h" - - -LTK_VECTOR_DECLARE (float, uFloat4, 4) - -int main() -{ - BEGIN_TESTING (Vector); - uFloat4 f = uFloat4_ltk_vector_new (); - - END_TESTING; -} diff --git a/src/ltk/testing/testing-prototype.h b/src/ltk/testing/testing-prototype.h deleted file mode 100644 index 39f4e6c..0000000 --- a/src/ltk/testing/testing-prototype.h +++ /dev/null @@ -1,37 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#include - -#define BEGIN_TESTING(name) \ -static int _fail = 0; \ -printf("..:: Testing " #name " ::..\n"); - -#define TEST1(val) _fail += (val)==0 -#define TEST0(val) _fail += (val)!=0 -#define END_TESTING return _fail; - diff --git a/src/utils/moc/Makefile b/src/utils/moc/Makefile deleted file mode 100644 index d42bd6d..0000000 --- a/src/utils/moc/Makefile +++ /dev/null @@ -1,24 +0,0 @@ - - -# Makefile example -- scanner and parser. -# -CXX = g++ -D_DEBUG -LEX = flex -YACC = bison -y -t -YFLAGS = -d -objects = parse.o scan.o - -moc: $(objects) - $(CXX) -o $@ $(objects) -lfl - -parse.o: parse.y - -# parse.h: parse.c -# mv -f y.tab.h parse.h - -scan.o: scan.l - - -clean: - rm -f *.o parse.tab.c parse.tab.h - diff --git a/src/utils/moc/moc_actions.h b/src/utils/moc/moc_actions.h deleted file mode 100644 index db6e97e..0000000 --- a/src/utils/moc/moc_actions.h +++ /dev/null @@ -1,92 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - -#ifndef MOC_ACTION_H -#define MOC_ACTION_H - -#include -#include -#include -#include - -#ifndef NDEBUG -#define DEBUG( ... ) { printf(" /*["); printf( __VA_ARGS__ ); printf("]*/ "); } -#else -#define DEBUG( ... ) ; -#endif - -#define CONCAT( dest , ... ) string_append(dest, __VA_ARGS__, NULL) - -char * string_append(char *first, ... ) { - va_list ap; - va_start (ap, first); /* Initialize the argument list. */ - - char *str_in = first; - char *str = malloc(sizeof(char) * strlen(str_in)); - strcat(str,str_in); - - str_in = va_arg (ap,char *); - while (str_in) { - char *tmp = malloc(sizeof(char) * (strlen(str)+strlen(str_in)) ); - memcpy(tmp,str,strlen(str)); - memcpy(tmp+strlen(str),str_in,strlen(str_in)); - free(str); - str = tmp; - str_in = va_arg (ap,char *); - } - return str; -} - - - - - - -// ACTIONS // - - - -#define SIMPLE_DECLARATION simple_declaration_action - -static int simple_declaration_action(const char *type, const char *ids); - - - - - - -// move to implementation .. // -static int simple_declaration_action(const char *type, const char *ids) { - DEBUG("simple_declaration -> type:\"%s\" decl:\"%s\" ",type,ids); - return 0; -} - - - - - -#endif // MOC_ACTION_H diff --git a/src/utils/moc/parse.y b/src/utils/moc/parse.y deleted file mode 100644 index ba06996..0000000 --- a/src/utils/moc/parse.y +++ /dev/null @@ -1,1257 +0,0 @@ -%{ - -#include -#include -#include "moc_actions.h" - -#define EMPTY strdup(""); -#define YYDEBUG 1 -#define YYPRINT(file, type, value) yyprint (file, type, value) - -%} - -// Symbols. // -%union -{ - char *sval; -}; - -%token MOC_PROPERTY MOC_OBJECT_PARAMETERS -%type MOC_monk_seq_opt MOC_monk - - - -%token IDENTIFIER -%token INTEGER FLOATING CHARACTER STRING -%token TYPEDEF_NAME NAMESPACE_NAME CLASS_NAME ENUM_NAME TEMPLATE_NAME - -%token COLONCOLON -%token ELLIPSIS DOTSTAR ADDEQ SUBEQ MULEQ DIVEQ MODEQ -%token XOREQ ANDEQ OREQ SL SR SREQ SLEQ EQ NOTEQ LTEQ GTEQ ANDAND OROR -%token PLUSPLUS MINUSMINUS ARROWSTAR ARROW - - -%token ASM AUTO BOOL BREAK CASE CATCH CHAR CLASS CONST CONST_CAST CONTINUE -%token DEFAULT DELETE DO DOUBLE DYNAMIC_CAST ELSE ENUM EXPLICIT EXPORT EXTERN -%token FALSE FLOAT FOR FRIEND GOTO IF INLINE INT LONG MUTABLE NAMESPACE NEW -%token OPERATOR PRIVATE PROTECTED PUBLIC REGISTER REINTERPRET_CAST RETURN -%token SHORT SIGNED SIZEOF STATIC STATIC_CAST STRUCT SWITCH TEMPLATE THIS -%token THROW TRUE TRY TYPEDEF TYPEID TYPENAME UNION UNSIGNED USING VIRTUAL -%token VOID VOLATILE WCHAR_T WHILE - - - - -%type type_name class_name enum_name typedef_name - -%type simple_type_specifier -%type decl_specifier_seq decl_specifier -%type simple_declaration block_declaration - -%type init_declarator_list init_declarator -%type initializer initializer_clause -%type declarator direct_declarator ptr_operator declarator_id -%type type_specifier type_specifier_seq elaborated_type_specifier class_key nested_name_specifier template_argument_list -%type enum_specifier enumerator_list enumerator_definition enumerator -%type class_or_namespace_name -%type identifier -%type id_expression -%type constant_expression - - -%type declaration_seq_opt -%type TEMPLATE_opt -%type nested_name_specifier_opt -%type expression_list_opt -%type COLONCOLON_opt -%type new_placement_opt -%type new_initializer_opt -%type new_declarator_opt -%type expression_opt -%type statement_seq_opt -%type condition_opt -%type decl_specifier_seq_opt -%type init_declarator_list_opt -%type identifier_opt -%type enumerator_list_opt -%type TYPENAME_opt -%type initializer_opt -%type cv_qualifier_seq_opt -%type exception_specification_opt -%type constant_expression_opt -%type abstract_declarator_opt -%type type_specifier_seq_opt -%type direct_abstract_declarator_opt -%type parameter_declaration_list_opt -%type ELLIPSIS_opt -%type ctor_initializer_opt -%type COMMA_opt -%type member_specification_opt -%type base_clause_opt -%type member_declarator_list_opt -%type SEMICOLON_opt -%type pure_specifier_opt -%type constant_initializer_opt -%type access_specifier_opt -%type VIRTUAL_opt -%type conversion_declarator_opt -%type EXPORT_opt -%type handler_seq_opt -%type assignment_expression_opt -%type type_id_list_opt - - -%error-verbose -//%debug -%% - -MOC_block_seq_opt - : /* empty */ - | MOC_block_seq_opt MOC_uLib_Parameters - | MOC_block_seq_opt MOC_Property - ; - -MOC_Property: - MOC_PROPERTY '(' IDENTIFIER ')' '{' { DEBUG("found property: %s",$3); } - MOC_prop_content_opt - '}' { DEBUG("property ends"); } - ; - -MOC_uLib_Parameters: - MOC_OBJECT_PARAMETERS '(' IDENTIFIER ')' '{' { DEBUG("found parameters: %s",$3); } - MOC_prop_content_opt - '}' { DEBUG("parameters ends"); } - ; - -MOC_prop_content_opt - : - | translation_unit - ; - - -MOC_monk_seq_opt - : { $$ = EMPTY; } - | MOC_monk_seq_opt MOC_monk { $$ = CONCAT($1,$2); } - ; - -MOC_monk - : INT IDENTIFIER ';' { $$ = CONCAT("type:",$1," ","id:",$2," "); } - | CHAR IDENTIFIER ';' { $$ = CONCAT("type:",$1," ","id:",$2," "); } - | decl_specifier_seq_opt decl_specifier_seq_opt ';' { $$ = CONCAT("type:",$1," ","id:",$2," "); } - ; - -/*---------------------------------------------------------------------- - * Lexical elements. - *----------------------------------------------------------------------*/ - -identifier: - IDENTIFIER - ; - -literal: - integer_literal - | character_literal - | floating_literal - | string_literal - | boolean_literal - ; - -integer_literal: - INTEGER - ; - -character_literal: - CHARACTER - ; - -floating_literal: - FLOATING - ; - -string_literal: - STRING - ; - -boolean_literal: - TRUE - | FALSE - ; - -/*---------------------------------------------------------------------- - * Translation unit. - *----------------------------------------------------------------------*/ - -translation_unit: - declaration_seq_opt { DEBUG("t unit"); } - ; - -/*---------------------------------------------------------------------- - * Expressions. - *----------------------------------------------------------------------*/ - -primary_expression: - literal - | THIS - | COLONCOLON identifier - | COLONCOLON operator_function_id - | COLONCOLON qualified_id - | '(' expression ')' - | id_expression - ; - -id_expression: - unqualified_id - | qualified_id - ; - -unqualified_id: - identifier - | operator_function_id - | conversion_function_id - | '~' class_name - | template_id - ; - -qualified_id: - nested_name_specifier TEMPLATE_opt unqualified_id - ; - -nested_name_specifier: - class_or_namespace_name COLONCOLON nested_name_specifier_opt - ; - -class_or_namespace_name: - class_name - | namespace_name - ; - -postfix_expression: - primary_expression - | postfix_expression '[' expression ']' - | postfix_expression '(' expression_list_opt ')' - | simple_type_specifier '(' expression_list_opt ')' - | postfix_expression '.' TEMPLATE_opt COLONCOLON_opt id_expression - | postfix_expression ARROW TEMPLATE_opt COLONCOLON_opt id_expression - | postfix_expression '.' pseudo_destructor_name - | postfix_expression ARROW pseudo_destructor_name - | postfix_expression PLUSPLUS - | postfix_expression MINUSMINUS - | DYNAMIC_CAST '<' type_id '>' '(' expression ')' - | STATIC_CAST '<' type_id '>' '(' expression ')' - | REINTERPRET_CAST '<' type_id '>' '(' expression ')' - | CONST_CAST '<' type_id '>' '(' expression ')' - | TYPEID '(' expression ')' - | TYPEID '(' type_id ')' - ; - -expression_list: - assignment_expression - | expression_list ',' assignment_expression - ; - -pseudo_destructor_name: - COLONCOLON_opt nested_name_specifier_opt type_name COLONCOLON '~' type_name - | COLONCOLON_opt nested_name_specifier_opt '~' type_name - ; - -unary_expression: - postfix_expression - | PLUSPLUS cast_expression - | MINUSMINUS cast_expression - | unary_operator cast_expression - | SIZEOF unary_expression - | SIZEOF '(' type_id ')' - | new_expression - | delete_expression - ; - -unary_operator: - '*' - | '&' - | '+' - | '-' - | '!' - | '~' - ; - -new_expression: - COLONCOLON_opt NEW new_placement_opt new_type_id new_initializer_opt - | COLONCOLON_opt NEW new_placement_opt '(' type_id ')' new_initializer_opt - ; - -new_placement: - '(' expression_list ')' - ; - -new_type_id: - type_specifier_seq new_declarator_opt - ; - -new_declarator: - ptr_operator new_declarator_opt - | direct_new_declarator - ; - -direct_new_declarator: - '[' expression ']' - | direct_new_declarator '[' constant_expression ']' - ; - -new_initializer: - '(' expression_list_opt ')' - ; - -delete_expression: - COLONCOLON_opt DELETE cast_expression - | COLONCOLON_opt DELETE '[' ']' cast_expression - ; - -cast_expression: - unary_expression - | '(' type_id ')' cast_expression - ; - -pm_expression: - cast_expression - | pm_expression DOTSTAR cast_expression - | pm_expression ARROWSTAR cast_expression - ; - -multiplicative_expression: - pm_expression - | multiplicative_expression '*' pm_expression - | multiplicative_expression '/' pm_expression - | multiplicative_expression '%' pm_expression - ; - -additive_expression: - multiplicative_expression - | additive_expression '+' multiplicative_expression - | additive_expression '-' multiplicative_expression - ; - -shift_expression: - additive_expression - | shift_expression SL additive_expression - | shift_expression SR additive_expression - ; - -relational_expression: - shift_expression - | relational_expression '<' shift_expression - | relational_expression '>' shift_expression - | relational_expression LTEQ shift_expression - | relational_expression GTEQ shift_expression - ; - -equality_expression: - relational_expression - | equality_expression EQ relational_expression - | equality_expression NOTEQ relational_expression - ; - -and_expression: - equality_expression - | and_expression '&' equality_expression - ; - -exclusive_or_expression: - and_expression - | exclusive_or_expression '^' and_expression - ; - -inclusive_or_expression: - exclusive_or_expression - | inclusive_or_expression '|' exclusive_or_expression - ; - -logical_and_expression: - inclusive_or_expression - | logical_and_expression ANDAND inclusive_or_expression - ; - -logical_or_expression: - logical_and_expression - | logical_or_expression OROR logical_and_expression - ; - -conditional_expression: - logical_or_expression - | logical_or_expression '?' expression ':' assignment_expression - ; - -assignment_expression: - conditional_expression - | logical_or_expression assignment_operator assignment_expression - | throw_expression - ; - -assignment_operator: - '=' - | MULEQ - | DIVEQ - | MODEQ - | ADDEQ - | SUBEQ - | SREQ - | SLEQ - | ANDEQ - | XOREQ - | OREQ - ; - -expression: - assignment_expression - | expression ',' assignment_expression - ; - -constant_expression: - conditional_expression - ; - -/*---------------------------------------------------------------------- - * Statements. - *----------------------------------------------------------------------*/ - -statement: - labeled_statement - | expression_statement - | compound_statement - | selection_statement - | iteration_statement - | jump_statement - | declaration_statement - | try_block - ; - -labeled_statement: - identifier ':' statement - | CASE constant_expression ':' statement - | DEFAULT ':' statement - ; - -expression_statement: - expression_opt ';' - ; - -compound_statement: - '{' statement_seq_opt '}' - ; - -statement_seq: - statement - | statement_seq statement - ; - -selection_statement: - IF '(' condition ')' statement - | IF '(' condition ')' statement ELSE statement - | SWITCH '(' condition ')' statement - ; - -condition: - expression - | type_specifier_seq declarator '=' assignment_expression - ; - -iteration_statement: - WHILE '(' condition ')' statement - | DO statement WHILE '(' expression ')' ';' - | FOR '(' for_init_statement condition_opt ';' expression_opt ')' statement - ; - -for_init_statement: - expression_statement - | simple_declaration - ; - -jump_statement: - BREAK ';' - | CONTINUE ';' - | RETURN expression_opt ';' - | GOTO identifier ';' - ; - -declaration_statement: - block_declaration - ; - -/*---------------------------------------------------------------------- - * Declarations. - *----------------------------------------------------------------------*/ - -declaration_seq: - declaration - | declaration_seq declaration - ; - -declaration: - block_declaration - | function_definition - | template_declaration - | explicit_instantiation - | explicit_specialization - | linkage_specification - | namespace_definition - ; - -block_declaration: - simple_declaration - | asm_definition - | namespace_alias_definition - | using_declaration - | using_directive - ; - -simple_declaration: - decl_specifier_seq_opt init_declarator_list_opt ';' { SIMPLE_DECLARATION($1,$2); } - ; - -decl_specifier: - storage_class_specifier - | type_specifier - | function_specifier - | FRIEND - | TYPEDEF - ; - -decl_specifier_seq: - decl_specifier_seq_opt decl_specifier { $$ = CONCAT($1,$2); } - ; - -storage_class_specifier: - AUTO - | REGISTER - | STATIC - | EXTERN - | MUTABLE - ; - -function_specifier: - INLINE - | VIRTUAL - | EXPLICIT - ; - -typedef_name: - identifier - ; - -type_specifier: - simple_type_specifier - | class_specifier - | enum_specifier - | elaborated_type_specifier - | cv_qualifier - ; - -simple_type_specifier: - COLONCOLON_opt /*nested_name_specifier_opt*/ type_name { $$ = CONCAT($1,$2); } /*<<<<< FIX DISAMBIGUATION <<<<<<*/ - | CHAR - | WCHAR_T - | BOOL - | SHORT - | INT - | LONG - | SIGNED - | UNSIGNED - | FLOAT - | DOUBLE - | VOID - ; - -type_name: - class_name - | enum_name - | typedef_name - ; - -elaborated_type_specifier: - class_key COLONCOLON_opt nested_name_specifier_opt identifier { $$ = CONCAT($1,$2,$3,$4); } - | ENUM COLONCOLON_opt nested_name_specifier_opt identifier { $$ = CONCAT($1,$2,$3,$4); } - | TYPENAME COLONCOLON_opt nested_name_specifier identifier { $$ = CONCAT($1,$2,$3,$4); } - | TYPENAME COLONCOLON_opt nested_name_specifier identifier '<' template_argument_list '>' { $$ = CONCAT($1,$2,$3,$4,"<",$6,">"); } - ; - -enum_name: - identifier - ; - -enum_specifier: - ENUM identifier_opt '{' enumerator_list_opt '}' { $$ = CONCAT($1,$2,"{",$4,"}"); } - ; - -enumerator_list: - enumerator_definition - | enumerator_list ',' enumerator_definition { $$ = CONCAT($1,",",$3); } - ; - -enumerator_definition: - enumerator - | enumerator '=' constant_expression { $$ = CONCAT($1,"=",$3); } - ; - -enumerator: - identifier - ; - -namespace_name: - original_namespace_name - | namespace_alias - ; - -original_namespace_name: - identifier - ; - -namespace_definition: - named_namespace_definition - | unnamed_namespace_definition - ; - -named_namespace_definition: - original_namespace_definition - | extension_namespace_definition - ; - -original_namespace_definition: - NAMESPACE identifier '{' namespace_body '}' - ; - -extension_namespace_definition: - NAMESPACE original_namespace_name '{' namespace_body '}' - ; - -unnamed_namespace_definition: - NAMESPACE '{' namespace_body '}' - ; - -namespace_body: - declaration_seq_opt - ; - -namespace_alias: - identifier - ; - -namespace_alias_definition: - NAMESPACE identifier '=' qualified_namespace_specifier ';' - ; - -qualified_namespace_specifier: - COLONCOLON_opt nested_name_specifier_opt namespace_name - ; - -using_declaration: - USING TYPENAME_opt COLONCOLON_opt nested_name_specifier unqualified_id ';' - | USING COLONCOLON unqualified_id ';' - ; - -using_directive: - USING NAMESPACE COLONCOLON_opt nested_name_specifier_opt namespace_name ';' - ; - -asm_definition: - ASM '(' string_literal ')' ';' - ; - -linkage_specification: - EXTERN string_literal '{' declaration_seq_opt '}' - | EXTERN string_literal declaration - ; - -/*---------------------------------------------------------------------- - * Declarators. - *----------------------------------------------------------------------*/ - -init_declarator_list: - init_declarator - | init_declarator_list ',' init_declarator { $$ = CONCAT($1,",",$3); } - ; - -init_declarator: - declarator initializer_opt { $$ = CONCAT($1,$2); } - ; - -declarator: - direct_declarator - | ptr_operator declarator { $$ = CONCAT($1,$2); } - ; - -direct_declarator: - declarator_id - | direct_declarator '('parameter_declaration_clause ')' cv_qualifier_seq_opt exception_specification_opt - | direct_declarator '[' constant_expression_opt ']' { $$ = CONCAT($1,"[",$3,"]"); } - | '(' declarator ')' { $$ = CONCAT("(",$2,")"); } - ; - -ptr_operator: - '*' cv_qualifier_seq_opt { $$ = CONCAT("*",$2); } - | '&' { $$ = strdup("&"); } - | COLONCOLON_opt nested_name_specifier '*' cv_qualifier_seq_opt { $$ = CONCAT($1,$2,"*",$4); } - ; - -cv_qualifier_seq: - cv_qualifier cv_qualifier_seq_opt - ; - -cv_qualifier: - CONST - | VOLATILE - ; - -declarator_id: - COLONCOLON_opt id_expression { $$ = CONCAT($1,$2); } - | COLONCOLON_opt nested_name_specifier_opt type_name { $$ = CONCAT($1,$2,$3); } - ; - -type_id: - type_specifier_seq abstract_declarator_opt /*{ $$ = CONCAT($1,$2); }*/ - ; - -type_specifier_seq: - type_specifier type_specifier_seq_opt { $$ = CONCAT($1,$2); } - ; - -abstract_declarator: - ptr_operator abstract_declarator_opt /*{ $$ = CONCAT($1,$2); }*/ - | direct_abstract_declarator - ; - -direct_abstract_declarator: - direct_abstract_declarator_opt '(' parameter_declaration_clause ')' cv_qualifier_seq_opt exception_specification_opt - | direct_abstract_declarator_opt '[' constant_expression_opt ']' - | '(' abstract_declarator ')' - ; - -parameter_declaration_clause: - parameter_declaration_list_opt ELLIPSIS_opt - | parameter_declaration_list ',' ELLIPSIS - ; - -parameter_declaration_list: - parameter_declaration - | parameter_declaration_list ',' parameter_declaration - ; - -parameter_declaration: - decl_specifier_seq declarator - | decl_specifier_seq declarator '=' assignment_expression - | decl_specifier_seq abstract_declarator_opt - | decl_specifier_seq abstract_declarator_opt '=' assignment_expression - ; - -function_definition: - decl_specifier_seq_opt declarator ctor_initializer_opt function_body - | decl_specifier_seq_opt declarator function_try_block - ; - -function_body: - compound_statement - ; - -initializer: - '=' initializer_clause { $$ = strdup($2); } - | '(' expression_list ')' - ; - -initializer_clause: - assignment_expression - | '{' initializer_list COMMA_opt '}' - | '{' '}' - ; - -initializer_list: - initializer_clause - | initializer_list ',' initializer_clause - ; - -/*---------------------------------------------------------------------- - * Classes. - *----------------------------------------------------------------------*/ - -class_name: - identifier - | template_id - ; - -class_specifier: - class_head '{' member_specification_opt '}' - ; - -class_head: - class_key identifier_opt base_clause_opt - | class_key nested_name_specifier identifier base_clause_opt - ; - -class_key: - CLASS - | STRUCT - | UNION - ; - -member_specification: - member_declaration member_specification_opt - | access_specifier ':' member_specification_opt - ; - -member_declaration: - decl_specifier_seq_opt member_declarator_list_opt ';' - | function_definition SEMICOLON_opt - | qualified_id ';' - | using_declaration - | template_declaration - ; - -member_declarator_list: - member_declarator - | member_declarator_list ',' member_declarator - ; - -member_declarator: - declarator pure_specifier_opt - | declarator constant_initializer_opt - | identifier_opt ':' constant_expression - ; - -pure_specifier: - '=' '0' - ; - -constant_initializer: - '=' constant_expression - ; - -/*---------------------------------------------------------------------- - * Derived classes. - *----------------------------------------------------------------------*/ - -base_clause: - ':' base_specifier_list - ; - -base_specifier_list: - base_specifier - | base_specifier_list ',' base_specifier - ; - -base_specifier: - COLONCOLON_opt nested_name_specifier_opt class_name - | VIRTUAL access_specifier_opt COLONCOLON_opt nested_name_specifier_opt class_name - | access_specifier VIRTUAL_opt COLONCOLON_opt nested_name_specifier_opt class_name - ; - -access_specifier: - PRIVATE - | PROTECTED - | PUBLIC - ; - -/*---------------------------------------------------------------------- - * Special member functions. - *----------------------------------------------------------------------*/ - -conversion_function_id: - OPERATOR conversion_type_id - ; - -conversion_type_id: - type_specifier_seq conversion_declarator_opt - ; - -conversion_declarator: - ptr_operator conversion_declarator_opt - ; - -ctor_initializer: - ':' mem_initializer_list - ; - -mem_initializer_list: - mem_initializer - | mem_initializer ',' mem_initializer_list - ; - -mem_initializer: - mem_initializer_id '(' expression_list_opt ')' - ; - -mem_initializer_id: - COLONCOLON_opt nested_name_specifier_opt class_name - | identifier - ; - -/*---------------------------------------------------------------------- - * Overloading. - *----------------------------------------------------------------------*/ - -operator_function_id: - OPERATOR operator - ; - -operator: - NEW - | DELETE - | NEW '[' ']' - | DELETE '[' ']' - | '+' - | '_' - | '*' - | '/' - | '%' - | '^' - | '&' - | '|' - | '~' - | '!' - | '=' - | '<' - | '>' - | ADDEQ - | SUBEQ - | MULEQ - | DIVEQ - | MODEQ - | XOREQ - | ANDEQ - | OREQ - | SL - | SR - | SREQ - | SLEQ - | EQ - | NOTEQ - | LTEQ - | GTEQ - | ANDAND - | OROR - | PLUSPLUS - | MINUSMINUS - | ',' - | ARROWSTAR - | ARROW - | '(' ')' - | '[' ']' - ; - -/*---------------------------------------------------------------------- - * Templates. - *----------------------------------------------------------------------*/ - -template_declaration: - EXPORT_opt TEMPLATE '<' template_parameter_list '>' declaration - ; - -template_parameter_list: - template_parameter - | template_parameter_list ',' template_parameter - ; - -template_parameter: - type_parameter - | parameter_declaration - ; - -type_parameter: - CLASS identifier_opt - | CLASS identifier_opt '=' type_id - | TYPENAME identifier_opt - | TYPENAME identifier_opt '=' type_id - | TEMPLATE '<' template_parameter_list '>' CLASS identifier_opt - | TEMPLATE '<' template_parameter_list '>' CLASS identifier_opt '=' template_name - ; - -template_id: - template_name '<' template_argument_list '>' - ; - -template_name: - identifier - ; - -template_argument_list: - template_argument - | template_argument_list ',' template_argument - ; - -template_argument: - assignment_expression - | type_id - | template_name - ; - -explicit_instantiation: - TEMPLATE declaration - ; - -explicit_specialization: - TEMPLATE '<' '>' declaration - ; - -/*---------------------------------------------------------------------- - * Exception handling. - *----------------------------------------------------------------------*/ - -try_block: - TRY compound_statement handler_seq - ; - -function_try_block: - TRY ctor_initializer_opt function_body handler_seq - ; - -handler_seq: - handler handler_seq_opt - ; - -handler: - CATCH '(' exception_declaration ')' compound_statement - ; - -exception_declaration: - type_specifier_seq declarator - | type_specifier_seq abstract_declarator - | type_specifier_seq - | ELLIPSIS - ; - -throw_expression: - THROW assignment_expression_opt - ; - -exception_specification: - THROW '(' type_id_list_opt ')' - ; - -type_id_list: - type_id - | type_id_list ',' type_id - ; - -/*---------------------------------------------------------------------- - * Epsilon (optional) definitions. - *----------------------------------------------------------------------*/ - -declaration_seq_opt: - { $$ = EMPTY; } - | declaration_seq - ; - -TEMPLATE_opt: - { $$ = EMPTY; } - | TEMPLATE - ; - -nested_name_specifier_opt: - { $$ = EMPTY; } - | nested_name_specifier - ; - -expression_list_opt: - { $$ = EMPTY; } - | expression_list - ; - -COLONCOLON_opt: - { $$ = EMPTY; } - | COLONCOLON { $$ = strdup("::"); } - ; - -new_placement_opt: - { $$ = EMPTY; } - | new_placement - ; - -new_initializer_opt: - { $$ = EMPTY; } - | new_initializer - ; - -new_declarator_opt: - { $$ = EMPTY; } - | new_declarator - ; - -expression_opt: - { $$ = EMPTY; } - | expression - ; - -statement_seq_opt: - { $$ = EMPTY; } - | statement_seq - ; - -condition_opt: - { $$ = EMPTY; } - | condition - ; - -decl_specifier_seq_opt: - { $$ = EMPTY; } - | decl_specifier_seq - ; - -init_declarator_list_opt: - { $$ = EMPTY; } - | init_declarator_list - ; - -identifier_opt: - { $$ = EMPTY; } - | identifier - ; - -enumerator_list_opt: - { $$ = EMPTY; } - | enumerator_list - ; - -TYPENAME_opt: - { $$ = EMPTY; } - | TYPENAME - ; - -initializer_opt: - { $$ = EMPTY; } - | initializer - ; - -cv_qualifier_seq_opt: - { $$ = EMPTY; } - | cv_qualifier_seq - ; - -exception_specification_opt: - { $$ = EMPTY; } - | exception_specification - ; - -constant_expression_opt: - { $$ = EMPTY; } - | constant_expression - ; - -abstract_declarator_opt: - { $$ = EMPTY; } - | abstract_declarator - ; - -type_specifier_seq_opt: - { $$ = EMPTY; } - | type_specifier_seq - ; - -direct_abstract_declarator_opt: - { $$ = EMPTY; } - | direct_abstract_declarator - ; - -parameter_declaration_list_opt: - { $$ = EMPTY; } - | parameter_declaration_list - ; - -ELLIPSIS_opt: - { $$ = EMPTY; } - | ELLIPSIS - ; - -ctor_initializer_opt: - { $$ = EMPTY; } - | ctor_initializer - ; - -COMMA_opt: - { $$ = EMPTY; } - | ',' - ; - -member_specification_opt: - { $$ = EMPTY; } - | member_specification - ; - -base_clause_opt: - { $$ = EMPTY; } - | base_clause - ; - -member_declarator_list_opt: - { $$ = EMPTY; } - | member_declarator_list - ; - -SEMICOLON_opt: - { $$ = EMPTY; } - | ';' - ; - -pure_specifier_opt: - { $$ = EMPTY; } - | pure_specifier - ; - -constant_initializer_opt: - { $$ = EMPTY; } - | constant_initializer - ; - -access_specifier_opt: - { $$ = EMPTY; } - | access_specifier - ; - -VIRTUAL_opt: - { $$ = EMPTY; } - | VIRTUAL - ; - -conversion_declarator_opt: - { $$ = EMPTY; } - | conversion_declarator - ; - -EXPORT_opt: - { $$ = EMPTY; } - | EXPORT - ; - -handler_seq_opt: - { $$ = EMPTY; } - | handler_seq - ; - -assignment_expression_opt: - { $$ = EMPTY; } - | assignment_expression - ; - -type_id_list_opt: - { $$ = EMPTY; } - | type_id_list - ; - - -%% - -int yyerror(char *s) { - printf("error, %s\n", s); - return 1; -} - -void yyprint (FILE *file, - int type, - YYSTYPE value) -{ - if (type == IDENTIFIER) - fprintf (file, "%s", value.sval); - if (type == COLONCOLON) - fprintf (file, "%s", value.sval); - -} - -int main(void) { -/* yydebug = 1;*/ - yyparse(); -} diff --git a/src/utils/moc/sample.cpp b/src/utils/moc/sample.cpp deleted file mode 100644 index 8f8f2ff..0000000 --- a/src/utils/moc/sample.cpp +++ /dev/null @@ -1,51 +0,0 @@ -/*////////////////////////////////////////////////////////////////////////////// -// CMT Cosmic Muon Tomography project ////////////////////////////////////////// -//////////////////////////////////////////////////////////////////////////////// - - Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova - All rights reserved - - Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > - - ------------------------------------------------------------------ - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3.0 of the License, or (at your option) any later version. - - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. - - You should have received a copy of the GNU Lesser General Public - License along with this library. - -//////////////////////////////////////////////////////////////////////////////*/ - - - - -typedef int TestInt; - -class DerivedObject { - - -public: - - ULIB_OBJECT_PARAMETERS(test) - { - Bubu *a; - }; - -}; - -int main() { - - ULIB_OBJECT_PARAMETERS(prova) { - int a,b; - char *c; - }; - - return 0; -} diff --git a/src/utils/moc/scan.l b/src/utils/moc/scan.l deleted file mode 100644 index b5ff2d7..0000000 --- a/src/utils/moc/scan.l +++ /dev/null @@ -1,252 +0,0 @@ -%option stack -%{ -/* preamble */ -#include -#include -#include "y.tab.h" - -#define PRINT(str) { printf("%s",str); } -#define ENSTATE(st) { yy_push_state(YY_START); BEGIN(st); /*printf("ST[%i]",YY_START);*/ } -#define EXSTATE { BEGIN(yy_top_state()); yy_pop_state(); /*printf("ST[%i]",YY_START);*/ } - -#define SCANTEXT { fill_sval(); } -#define MATCH(name) { ECHO; SCANTEXT; return name; } - -int lineno; -int moc_level = 0; - -static int yywrap(void); -static void skip_until_eol(void); -static void skip_comment(void); -static int check_identifier(const char *); -static int fill_sval(); -%} - -blank [\t\f\v\r ]+ -anyunch <*>. - -intsuffix ([uU][lL]?)|([lL][uU]?) -fracconst ([0-9]*\.[0-9]+)|([0-9]+\.) -exppart [eE][-+]?[0-9]+ -floatsuffix [fFlL] -chartext ([^'])|(\\.) -stringtext ([^"])|(\\.) - -digit [0-9] -hex [0-9A-Fa-f] -letter [A-Z_a-z] -simple_escape_sequence (\\\'|\\\"|\\\?|\\\\|\\a|\\b|\\f|\\n|\\r|\\t|\\v) -octal_escape_sequence (\\[0-7]|\\[0-7][0-7]|\\[0-7][0-7][0-7]) -hexadecimal_escape_sequence (\\x{hex}+) -escape_sequence ({simple_escape_sequence}|{octal_escape_sequence}|{hexadecimal_escape_sequence}) -universal_character_name (\\u{hex}{hex}{hex}{hex}|\\U{hex}{hex}{hex}{hex}{hex}{hex}{hex}{hex}) -non_digit ({letter}|{universal_character_name}) -identifier ({non_digit}({non_digit}|{digit})*) - -begin_comment "/*" -end_comment "*/" -begin_inline_comment "//" -end_inline_comment "\n" - - -%s moc -%x cmt -%x inlcmt - -%% - -"\n" { ++lineno; ECHO; } -{blank} ECHO; - -{begin_comment} { ENSTATE(cmt); ECHO; } -{end_comment} { EXSTATE; ECHO; } - -{begin_inline_comment} { ENSTATE(inlcmt); ECHO; } -{end_inline_comment} { EXSTATE; ECHO; } - - -property { ECHO; ENSTATE(moc); return MOC_PROPERTY; } -ULIB_OBJECT_PARAMETERS { ECHO; ENSTATE(moc); return MOC_OBJECT_PARAMETERS; } -{ - "{" { moc_level++; MATCH('{'); } - "}" { if(!--moc_level)EXSTATE; MATCH('}'); } - - "<%" { MATCH('{'); } - "%>" { MATCH('}'); } - "[" { MATCH('['); } - "<:" { MATCH('['); } - "]" { MATCH(']'); } - ":>" { MATCH(']'); } - "(" { MATCH('('); } - ")" { MATCH(')'); } - ";" { MATCH(';'); } - "::" { MATCH(COLONCOLON); } - ":" { MATCH(':'); } - "..." { MATCH(ELLIPSIS); } - "?" { MATCH('?'); } - "." { MATCH('.'); } - ".*" { MATCH(DOTSTAR); } - "+" { MATCH('+'); } - "-" { MATCH('-'); } - "*" { MATCH('*'); } - "/" { MATCH('/'); } - "%" { MATCH('%'); } - "^" { MATCH('^'); } - "xor" { MATCH('^'); } - "&" { MATCH('&'); } - "bitand" { MATCH('&'); } - "|" { MATCH('|'); } - "bitor" { MATCH('|'); } - "~" { MATCH('~'); } - "compl" { MATCH('~'); } - "!" { MATCH('!'); } - "not" { MATCH('!'); } - "=" { MATCH('='); } - "<" { MATCH('<'); } - ">" { MATCH('>'); } - "+=" { MATCH(ADDEQ); } - "-=" { MATCH(SUBEQ); } - "*=" { MATCH(MULEQ); } - "/=" { MATCH(DIVEQ); } - "%=" { MATCH(MODEQ); } - "^=" { MATCH(XOREQ); } - "xor_eq" { MATCH(XOREQ); } - "&=" { MATCH(ANDEQ); } - "and_eq" { MATCH(ANDEQ); } - "|=" { MATCH(OREQ); } - "or_eq" { MATCH(OREQ); } - "<<" { MATCH(SL); } - ">>" { MATCH(SR); } - "<<=" { MATCH(SLEQ); } - ">>=" { MATCH(SREQ); } - "==" { MATCH(EQ); } - "!=" { MATCH(NOTEQ); } - "not_eq" { MATCH(NOTEQ); } - "<=" { MATCH(LTEQ); } - ">=" { MATCH(GTEQ); } - "&&" { MATCH(ANDAND); } - "and" { MATCH(ANDAND); } - "||" { MATCH(OROR); } - "or" { MATCH(OROR); } - "++" { MATCH(PLUSPLUS); } - "--" { MATCH(MINUSMINUS); } - "," { MATCH(','); } - "->*" { MATCH(ARROWSTAR); } - "->" { MATCH(ARROW); } - - "asm" { MATCH(ASM); } - "auto" { MATCH(AUTO); } - "bool" { MATCH(BOOL); } - "break" { MATCH(BREAK); } - "case" { MATCH(CASE); } - "catch" { MATCH(CATCH); } - "char" { MATCH(CHAR); } - "class" { MATCH(CLASS); } - "const" { MATCH(CONST); } - "const_cast" { MATCH(CONST_CAST); } - "continue" { MATCH(CONTINUE); } - "default" { MATCH(DEFAULT); } - "delete" { MATCH(DELETE); } - "do" { MATCH(DO); } - "double" { MATCH(DOUBLE); } - "dynamic_cast" { MATCH(DYNAMIC_CAST); } - "else" { MATCH(ELSE); } - "enum" { MATCH(ENUM); } - "explicit" { MATCH(EXPLICIT); } - "export" { MATCH(EXPORT); } - "extern" { MATCH(EXTERN); } - "false" { MATCH(FALSE); } - "float" { MATCH(FLOAT); } - "for" { MATCH(FOR); } - "friend" { MATCH(FRIEND); } - "goto" { MATCH(GOTO); } - "if" { MATCH(IF); } - "inline" { MATCH(INLINE); } - "int" { MATCH(INT); } - "long" { MATCH(LONG); } - "mutable" { MATCH(MUTABLE); } - "namespace" { MATCH(NAMESPACE); } - "new" { MATCH(NEW); } - "operator" { MATCH(OPERATOR); } - "private" { MATCH(PRIVATE); } - "protected" { MATCH(PROTECTED); } - "public" { MATCH(PUBLIC); } - "register" { MATCH(REGISTER); } - "reinterpret_cast" { MATCH(REINTERPRET_CAST); } - "return" { MATCH(RETURN); } - "short" { MATCH(SHORT); } - "signed" { MATCH(SIGNED); } - "sizeof" { MATCH(SIZEOF); } - "static" { MATCH(STATIC); } - "static_cast" { MATCH(STATIC_CAST); } - "struct" { MATCH(STRUCT); } - "switch" { MATCH(SWITCH); } - "template" { MATCH(TEMPLATE); } - "this" { MATCH(THIS); } - "throw" { MATCH(THROW); } - "true" { MATCH(TRUE); } - "try" { MATCH(TRY); } - "typedef" { MATCH(TYPEDEF); } - "typeid" { MATCH(TYPEID); } - "typename" { MATCH(TYPENAME); } - "union" { MATCH(UNION); } - "unsigned" { MATCH(UNSIGNED); } - "using" { MATCH(USING); } - "virtual" { MATCH(VIRTUAL); } - "void" { MATCH(VOID); } - "volatile" { MATCH(VOLATILE); } - "wchar_t" { MATCH(WCHAR_T); } - "while" { MATCH(WHILE); } - [a-zA-Z_][a-zA-Z_0-9]* { ECHO; return check_identifier(yytext); } - - "0"[xX][0-9a-fA-F]+{intsuffix}? { ECHO; return INTEGER; } - "0"[0-7]+{intsuffix}? { ECHO; return INTEGER; } - [0-9]+{intsuffix}? { ECHO; return INTEGER; } - - {fracconst}{exppart}?{floatsuffix}? { ECHO; return FLOATING; } - [0-9]+{exppart}{floatsuffix}? { ECHO; return FLOATING; } - - "'"{chartext}*"'" { ECHO; return CHARACTER; } - "L'"{chartext}*"'" { ECHO; return CHARACTER; } - "\""{stringtext}*"\"" { ECHO; return STRING; } - "L\""{stringtext}*"\"" { ECHO; return STRING; } - -} - -%% - -static int yywrap(void) -{ - return 1; -} - - -static int fill_sval() { - int len = strlen(yytext); - if(len) { - yylval.sval = malloc(len); - strncpy(yylval.sval, yytext, len); - } - else { - yylval.sval = strdup(""); - } - return len; -} - -static int check_identifier(const char *s) -{ -/* - switch (s[0]) { - case 'D': return TYPEDEF_NAME; - case 'N': return NAMESPACE_NAME; - case 'C': return CLASS_NAME; - case 'E': return ENUM_NAME; - case 'T': return TEMPLATE_NAME; - } -*/ - - yylval.sval = malloc(strlen(yytext)); - strncpy(yylval.sval, yytext, strlen(yytext)); - return IDENTIFIER; -} - From d56758d0b3b6a3f99551598a1d3cb9bd0e416856 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Sat, 21 Feb 2026 16:16:28 +0000 Subject: [PATCH 05/19] refactor: Update CMake build system and streamline Core object serialization and property handling. --- CMake/uLibTargetMacros.cmake | 2 +- CMakeLists.txt | 3 +- src/Core/Archives.h | 861 ++++++++---------- src/Core/CMakeLists.txt | 13 +- src/Core/Export.h | 96 +- src/Core/Object.cpp | 2 + src/Core/Object.h | 5 +- src/Core/Signal.h | 148 +-- src/Core/testing/CMakeLists.txt | 7 +- .../testing/SerializeDreadDiamondTest.cpp | 80 +- src/Core/testing/SerializeTest.cpp | 192 ++-- src/Core/testing/StaticInterfaceTest.cpp | 85 +- src/Detectors/CMakeLists.txt | 5 + src/Detectors/testing/CMakeLists.txt | 23 +- src/Math/CMakeLists.txt | 7 +- src/Math/testing/AccumulatorTest.cpp | 120 +-- src/Math/testing/CMakeLists.txt | 2 + src/Math/testing/TriangleMeshTest.cpp | 25 +- src/Math/testing/VoxRaytracerTest.cpp | 185 ++-- src/Root/CMakeLists.txt | 5 +- src/Root/testing/CMakeLists.txt | 7 +- src/Vtk/CMakeLists.txt | 4 + src/Vtk/testing/CMakeLists.txt | 4 +- src/utils/make_recipe/src/CMakeLists.txt | 5 +- 24 files changed, 830 insertions(+), 1056 deletions(-) diff --git a/CMake/uLibTargetMacros.cmake b/CMake/uLibTargetMacros.cmake index b0f1655..886a382 100644 --- a/CMake/uLibTargetMacros.cmake +++ b/CMake/uLibTargetMacros.cmake @@ -82,7 +82,7 @@ ENDMACRO(uLib_add_target) # TESTS and LIBRARIES must be defined macro(uLib_add_tests name) foreach(tn ${TESTS}) - add_executable(${tn} EXCLUDE_FROM_ALL ${tn}.cpp) + add_executable(${tn} ${tn}.cpp) add_test(NAME ${tn} COMMAND ${tn}) target_link_libraries(${tn} ${LIBRARIES}) diff --git a/CMakeLists.txt b/CMakeLists.txt index aeb4459..08bc6a6 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -76,6 +76,7 @@ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${CMAKE_CXX_WARNING_OPTION}") set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -UULIB_SERIALIZATION_ON -Wno-cpp") # CTEST framework +include(CTest) enable_testing() @@ -85,7 +86,7 @@ set(Boost_USE_STATIC_LIBS OFF) set(Boost_USE_MULTITHREADED ON) set(Boost_USE_STATIC_RUNTIME OFF) message(STATUS "CMAKE_PREFIX_PATH is ${CMAKE_PREFIX_PATH}") -find_package(Boost 1.45.0 COMPONENTS program_options REQUIRED) +find_package(Boost 1.45.0 COMPONENTS program_options serialization unit_test_framework REQUIRED) include_directories(${Boost_INCLUDE_DIRS}) find_package(Eigen3 CONFIG REQUIRED) diff --git a/src/Core/Archives.h b/src/Core/Archives.h index d9f9071..1a71072 100644 --- a/src/Core/Archives.h +++ b/src/Core/Archives.h @@ -23,14 +23,12 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_CORE_ARCHIVES_H #define U_CORE_ARCHIVES_H - #include #include +#include #include #include @@ -40,25 +38,20 @@ #include -#include -#include #include #include +#include +#include #include #include "StringReader.h" - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // FWD DECLARATIONS OF ARCHIVES // - - - namespace uLib { namespace Archive { @@ -68,40 +61,36 @@ class text_iarchive; class text_oarchive; class log_archive; - -} -} - +} // namespace Archive +} // namespace uLib namespace boost { namespace archive { namespace detail { -template class polymorphic_oarchive_route; -template class polymorphic_iarchive_route; -} -} -} +template class polymorphic_oarchive_route; +template class polymorphic_iarchive_route; +} // namespace detail +} // namespace archive +} // namespace boost namespace boost { namespace serialization { - template struct hrp; +template struct hrp; } -} - +} // namespace boost //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // ARCHIVES REGISTRATION // - namespace uLib { namespace Archive { namespace detail { struct adl_tag {}; -} -} -} +} // namespace detail +} // namespace Archive +} // namespace uLib namespace boost { namespace archive { @@ -110,34 +99,36 @@ namespace detail { // in overload resolution with the functions declared by // BOOST_SERIALIZATION_REGISTER_ARCHIVE, below. template -void instantiate_ptr_serialization(Serializable*, int, uLib::Archive::detail::adl_tag ) {} -} -} -} +void instantiate_ptr_serialization(Serializable *, int, + uLib::Archive::detail::adl_tag) {} +} // namespace detail +} // namespace archive +} // namespace boost // The function declaration generated by this macro never actually // gets called, but its return type gets instantiated, and that's // enough to cause registration of serialization functions between // Archive and any exported Serializable type. See also: // boost/serialization/export.hpp -# define ULIB_SERIALIZATION_REGISTER_ARCHIVE(_Archive) \ -namespace boost { namespace archive { namespace detail { \ - \ -template \ -BOOST_DEDUCED_TYPENAME _ptr_serialization_support<_Archive, Serializable>::type \ -instantiate_ptr_serialization( Serializable*, _Archive*, uLib::Archive::detail::adl_tag ); }}} - - - - - +#define ULIB_SERIALIZATION_REGISTER_ARCHIVE(_Archive) \ + namespace boost { \ + namespace archive { \ + namespace detail { \ + \ + template \ + BOOST_DEDUCED_TYPENAME \ + _ptr_serialization_support<_Archive, Serializable>::type \ + instantiate_ptr_serialization(Serializable *, _Archive *, \ + uLib::Archive::detail::adl_tag); \ + } \ + } \ + } //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // ARCHIVES IO INTERFACES // - namespace boost { namespace archive { namespace detail { @@ -145,176 +136,134 @@ namespace detail { /** * Custom implementation of boost interface_iarchive to add new operators */ -template -class uLib_interface_iarchive -{ +template class uLib_interface_iarchive { protected: - uLib_interface_iarchive(){}; + uLib_interface_iarchive() {}; + public: - ///////////////////////////////////////////////////////// - // archive public interface - typedef mpl::bool_ is_loading; - typedef mpl::bool_ is_saving; + ///////////////////////////////////////////////////////// + // archive public interface + typedef mpl::bool_ is_loading; + typedef mpl::bool_ is_saving; - // return a pointer to the most derived class - Archive * This(){ - return static_cast(this); - } + // return a pointer to the most derived class + Archive *This() { return static_cast(this); } - template - const basic_pointer_iserializer * - register_type(T * = NULL){ - const basic_pointer_iserializer & bpis = - boost::serialization::singleton< - pointer_iserializer - >::get_const_instance(); - this->This()->register_basic_serializer(bpis.get_basic_serializer()); - return & bpis; - } - template - Archive & operator>>(T & t){ - this->This()->load_override(t, 0); - return * this->This(); - } + template + const basic_pointer_iserializer *register_type(T * = NULL) { + const basic_pointer_iserializer &bpis = boost::serialization::singleton< + pointer_iserializer>::get_const_instance(); + this->This()->register_basic_serializer(bpis.get_basic_serializer()); + return &bpis; + } + template Archive &operator>>(T &t) { + this->This()->load_override(t); + return *this->This(); + } - // the & operator - template - Archive & operator&(T & t){ - return *(this->This()) >> t; - } + // the & operator + template Archive &operator&(T &t) { return *(this->This()) >> t; } - // the == operator - template - Archive & operator == (T & t) { - return this->operator &(t); - } + // the == operator + template Archive &operator==(T &t) { return this->operator&(t); } - // the != operator for human readable access - template - Archive & operator != (T & t) { - std::cerr << std::flush << "cauch string: " << t << "\n"; // REMOVE THIS ! - return * this->This(); - } + // the != operator for human readable access + template Archive &operator!=(T &t) { + std::cerr << std::flush << "cauch string: " << t << "\n"; // REMOVE THIS ! + return *this->This(); + } }; - /** * Custom implementation of boost interface_oarchive to add new operators */ -template -class uLib_interface_oarchive { +template class uLib_interface_oarchive { protected: - uLib_interface_oarchive(){}; + uLib_interface_oarchive() {}; + public: - ///////////////////////////////////////////////////////// - // archive public interface - typedef mpl::bool_ is_loading; - typedef mpl::bool_ is_saving; + ///////////////////////////////////////////////////////// + // archive public interface + typedef mpl::bool_ is_loading; + typedef mpl::bool_ is_saving; - // return a pointer to the most derived class - Archive * This(){ - return static_cast(this); - } + // return a pointer to the most derived class + Archive *This() { return static_cast(this); } - template - const basic_pointer_oserializer * - register_type(const T * = NULL){ - const basic_pointer_oserializer & bpos = - boost::serialization::singleton< - pointer_oserializer - >::get_const_instance(); - this->This()->register_basic_serializer(bpos.get_basic_serializer()); - return & bpos; - } + template + const basic_pointer_oserializer *register_type(const T * = NULL) { + const basic_pointer_oserializer &bpos = boost::serialization::singleton< + pointer_oserializer>::get_const_instance(); + this->This()->register_basic_serializer(bpos.get_basic_serializer()); + return &bpos; + } - template - Archive & operator<<(T & t){ - // to get access you must redefine save_override by typing - // "using save_override" in archive impl - this->This()->save_override(t, 0); - return * this->This(); - } + template Archive &operator<<(T &t) { + // to get access you must redefine save_override by typing + // "using save_override" in archive impl + this->This()->save_override(t); + return *this->This(); + } - // the & operator - template - Archive & operator&(T & t){ - #ifndef BOOST_NO_FUNCTION_TEMPLATE_ORDERING - return * this->This() << const_cast(t); - #else - return * this->This() << t; - #endif - } + // the & operator + template Archive &operator&(T &t) { +#ifndef BOOST_NO_FUNCTION_TEMPLATE_ORDERING + return *this->This() << const_cast(t); +#else + return *this->This() << t; +#endif + } - // the == operator - template - Archive & operator == (T & t) { - return this->operator &(t); - } + // the == operator + template Archive &operator==(T &t) { return this->operator&(t); } - // the != operator for human readable access - template - Archive & operator != (T & t) { - std::cerr << std::flush << "cauch string: " << t << "\n"; // REMOVE THIS ! - return * this->This(); - } + // the != operator for human readable access + template Archive &operator!=(T &t) { + std::cerr << std::flush << "cauch string: " << t << "\n"; // REMOVE THIS ! + return *this->This(); + } }; - - // DECLARE INTERFACE SPECIALIZATIONS /////////////////////////////////////////// // With this declarations all uLib archive Implementation will use their own // extended interface // template <> -class interface_iarchive : public - uLib_interface_iarchive {}; +class interface_iarchive + : public uLib_interface_iarchive {}; template <> -class interface_oarchive : public - uLib_interface_oarchive {}; +class interface_oarchive + : public uLib_interface_oarchive {}; template <> -class interface_iarchive : public - uLib_interface_iarchive {}; +class interface_iarchive + : public uLib_interface_iarchive {}; template <> -class interface_oarchive : public - uLib_interface_oarchive {}; +class interface_oarchive + : public uLib_interface_oarchive {}; template <> -class interface_oarchive : public - uLib_interface_oarchive {}; - +class interface_oarchive + : public uLib_interface_oarchive {}; //// Veritical repetition macro // FINIRE !!!!!!!!!!!!!!!!!!!!!!!!! -//#define _DECL_INTERFACE_ARCHIVE_V(vz,vn,vdata) \ -// template \ -// struct inherit_nofold : \ -// BOOST_PP_REPEAT(BOOST_PP_INC(vn),_INERIT_NOFOLD_H,~) \ -// {}; +// #define _DECL_INTERFACE_ARCHIVE_V(vz,vn,vdata) \ +// template \ +// struct inherit_nofold : \ +// BOOST_PP_REPEAT(BOOST_PP_INC(vn),_INERIT_NOFOLD_H,~) \ +// {}; //// Multiple size declaration // -//BOOST_PP_REPEAT(ULIB_CFG_MPL_INERIT_NOFOLD_MAXSIZE,_INERIT_NOFOLD_V,~) - -//#undef _INERIT_NOFOLD_H -//#undef _INERIT_NOFOLD_V - - -} // detail -} // archive -} // boost - - - - - - - - - - +// BOOST_PP_REPEAT(ULIB_CFG_MPL_INERIT_NOFOLD_MAXSIZE,_INERIT_NOFOLD_V,~) +// #undef _INERIT_NOFOLD_H +// #undef _INERIT_NOFOLD_V +} // namespace detail +} // namespace archive +} // namespace boost //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -330,196 +279,174 @@ class interface_oarchive : public namespace boost { namespace archive { -//template -//inline void load_const_override(Archive & ar, const char *t ){ -// typedef typename mpl::identity >::type typex; -// typex::invoke(ar, t); -//} - -//template -//inline void load(Archive & ar, T &t){ -// // if this assertion trips. It means we're trying to load a -// // const object with a compiler that doesn't have correct -// // funtion template ordering. On other compilers, this is -// // handled below. -// // detail::check_const_loading< T >(); -// typedef -// BOOST_DEDUCED_TYPENAME mpl::eval_if, -// mpl::identity > -// ,//else -// BOOST_DEDUCED_TYPENAME mpl::eval_if, -// mpl::identity > -// ,//else -// BOOST_DEDUCED_TYPENAME mpl::eval_if, -// mpl::identity > -// ,//else -// mpl::identity > -// > -// > -// >::type typex; -// typex::invoke(ar, t); -//} - - - -} -} - +// template +// inline void load_const_override(Archive & ar, const char *t ){ +// typedef typename mpl::identity +// >::type typex; typex::invoke(ar, t); +// } +// template +// inline void load(Archive & ar, T &t){ +// // if this assertion trips. It means we're trying to load a +// // const object with a compiler that doesn't have correct +// // funtion template ordering. On other compilers, this is +// // handled below. +// // detail::check_const_loading< T >(); +// typedef +// BOOST_DEDUCED_TYPENAME mpl::eval_if, +// mpl::identity > +// ,//else +// BOOST_DEDUCED_TYPENAME mpl::eval_if, +// mpl::identity > +// ,//else +// BOOST_DEDUCED_TYPENAME mpl::eval_if, +// mpl::identity > +// ,//else +// mpl::identity > +// > +// > +// >::type typex; +// typex::invoke(ar, t); +// } +} // namespace archive +} // namespace boost namespace uLib { namespace Archive { - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // POLYMORPHIC // +// class polymorphic_iarchive : +// public boost::archive::polymorphic_iarchive { -//class polymorphic_iarchive : -// public boost::archive::polymorphic_iarchive { - -//public: -// void load_override(const char *t, BOOST_PFTO int) -// { -// boost::archive::load_const_override(* this->This(), const_cast(t)); -// } +// public: +// void load_override(const char *t, BOOST_PFTO int) +// { +// boost::archive::load_const_override(* this->This(), +// const_cast(t)); +// } //}; - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // XML // -class xml_iarchive : - public boost::archive::xml_iarchive_impl -{ - typedef xml_iarchive Archive; - typedef boost::archive::xml_iarchive_impl base; +class xml_iarchive : public boost::archive::xml_iarchive_impl { + typedef xml_iarchive Archive; + typedef boost::archive::xml_iarchive_impl base; + + // give serialization implementation access to this class + friend class boost::archive::detail::interface_iarchive; + friend class boost::archive::basic_xml_iarchive; + friend class boost::archive::load_access; - // give serialization implementation access to this class - friend class boost::archive::detail::interface_iarchive; - friend class boost::archive::basic_xml_iarchive; - friend class boost::archive::load_access; public: - xml_iarchive(std::istream & is, unsigned int flags = 0) : - xml_iarchive_impl(is, flags) - {} + xml_iarchive(std::istream &is, unsigned int flags = 0) + : xml_iarchive_impl(is, flags) {} - using basic_xml_iarchive::load_override; + using basic_xml_iarchive::load_override; - // Anything not an attribute should be a name value pair as nvp or hrp - typedef boost::archive::detail::common_iarchive detail_common_iarchive; - template - void load_override( - #ifndef BOOST_NO_FUNCTION_TEMPLATE_ORDERING - const - #endif - boost::serialization::hrp< T > & t, - int v - ){ - this->This()->load_start(t.name()); - this->detail_common_iarchive::load_override(t.value(), 0); -// t.stov(); - this->This()->load_end(t.name()); - } + // Anything not an attribute should be a name value pair as nvp or hrp + typedef boost::archive::detail::common_iarchive + detail_common_iarchive; + template + void load_override( +#ifndef BOOST_NO_FUNCTION_TEMPLATE_ORDERING + const +#endif + boost::serialization::hrp &t) { + this->This()->load_start(t.name()); + this->detail_common_iarchive::load_override(t.value()); + // t.stov(); + this->This()->load_end(t.name()); + } + // class_name_type can't be handled here as it depends upon the + // char type used by the stream. So require the derived implementation. + // derived in this case is xml_iarchive_impl or base .. + using base::load_override; - // class_name_type can't be handled here as it depends upon the - // char type used by the stream. So require the derived implementation. - // derived in this case is xml_iarchive_impl or base .. - using base::load_override; + void load_override(const char *str) { + // StringReader sr(basic_text_iprimitive::is); + // sr >> str; + } - void load_override(const char *str, int v) { - // StringReader sr(basic_text_iprimitive::is); - // sr >> str; - } - - ~xml_iarchive(){}; + ~xml_iarchive() {}; }; -//typedef boost::archive::detail::polymorphic_iarchive_route< -//boost::archive::xml_iarchive_impl +// typedef boost::archive::detail::polymorphic_iarchive_route< +// boost::archive::xml_iarchive_impl //> polymorphic_xml_iarchive; template -struct polymorphic_iarchive_route : - boost::archive::detail::polymorphic_iarchive_route -{ - virtual void load(const char * t){ - ArchiveImpl::load(t); - } +struct polymorphic_iarchive_route + : boost::archive::detail::polymorphic_iarchive_route { + virtual void load(const char *t) { ArchiveImpl::load(t); } }; - -class polymorphic_xml_iarchive : - public polymorphic_iarchive_route< boost::archive::xml_iarchive_impl > -{ - // give serialization implementation access to this class -// friend class boost::archive::detail::interface_iarchive; -// friend class boost::archive::basic_xml_iarchive; -// friend class boost::archive::load_access; +class polymorphic_xml_iarchive + : public polymorphic_iarchive_route< + boost::archive::xml_iarchive_impl> { + // give serialization implementation access to this class + // friend class boost::archive::detail::interface_iarchive; + // friend class boost::archive::basic_xml_iarchive; + // friend class boost::archive::load_access; public: - virtual void load_override(const char *str, int v) { - ; - } + virtual void load_override(const char *str) { ; } }; +class xml_oarchive : public boost::archive::xml_oarchive_impl { + typedef xml_oarchive Archive; + typedef boost::archive::xml_oarchive_impl base; + // give serialization implementation access to this class + friend class boost::archive::detail::interface_oarchive; + friend class boost::archive::basic_xml_oarchive; + friend class boost::archive::save_access; -class xml_oarchive : - public boost::archive::xml_oarchive_impl -{ - typedef xml_oarchive Archive; - typedef boost::archive::xml_oarchive_impl base; - - // give serialization implementation access to this class - friend class boost::archive::detail::interface_oarchive; - friend class boost::archive::basic_xml_oarchive; - friend class boost::archive::save_access; public: - xml_oarchive(std::ostream & os, unsigned int flags = 0) : - boost::archive::xml_oarchive_impl(os, flags) - {} + xml_oarchive(std::ostream &os, unsigned int flags = 0) + : boost::archive::xml_oarchive_impl(os, flags) {} - // example of implementing save_override for const char* // - // void save_override(const char *t, int) { - // std::cout << "found char: " << t << "\n"; - // } + // example of implementing save_override for const char* // + // void save_override(const char *t, int) { + // std::cout << "found char: " << t << "\n"; + // } - using basic_xml_oarchive::save_override; + using basic_xml_oarchive::save_override; - // special treatment for name-value pairs. - typedef boost::archive::detail::common_oarchive detail_common_oarchive; - template - void save_override( - #ifndef BOOST_NO_FUNCTION_TEMPLATE_ORDERING - const - #endif - ::boost::serialization::hrp< T > & t, - int v - ){ - this->This()->save_start(t.name()); -// t.vtos(); -// this->detail_common_oarchive::save_override(t.const_value(), 0); - this->This()->save_end(t.name()); - } + // special treatment for name-value pairs. + typedef boost::archive::detail::common_oarchive + detail_common_oarchive; + template + void save_override( +#ifndef BOOST_NO_FUNCTION_TEMPLATE_ORDERING + const +#endif + ::boost::serialization::hrp &t) { + this->This()->save_start(t.name()); + // t.vtos(); + // this->detail_common_oarchive::save_override(t.const_value()); + this->This()->save_end(t.name()); + } - void save_override(const char *str, int v) { - // Do not save any human decoration string // - // basic_text_oprimitive::save(str); - } + void save_override(const char *str) { + // Do not save any human decoration string // + // basic_text_oprimitive::save(str); + } - ~xml_oarchive(){} + ~xml_oarchive() {} }; -//typedef boost::archive::detail::polymorphic_oarchive_route< -//boost::archive::xml_oarchive_impl +// typedef boost::archive::detail::polymorphic_oarchive_route< +// boost::archive::xml_oarchive_impl //> polymorphic_xml_oarchive; //////////////////////////////////////////////////////////////////////////////// @@ -527,157 +454,137 @@ public: //////////////////////////////////////////////////////////////////////////////// // TEXT // -class text_iarchive : - public boost::archive::text_iarchive_impl -{ - typedef text_iarchive Archive; - typedef boost::archive::text_iarchive_impl base; +class text_iarchive : public boost::archive::text_iarchive_impl { + typedef text_iarchive Archive; + typedef boost::archive::text_iarchive_impl base; + + // give serialization implementation access to this class + friend class boost::archive::detail::interface_iarchive; + friend class boost::archive::basic_text_iarchive; + friend class boost::archive::load_access; - // give serialization implementation access to this class - friend class boost::archive::detail::interface_iarchive; - friend class boost::archive::basic_text_iarchive; - friend class boost::archive::load_access; public: - text_iarchive(std::istream & is, unsigned int flags = 0) : - text_iarchive_impl(is, flags) - {} + text_iarchive(std::istream &is, unsigned int flags = 0) + : text_iarchive_impl(is, flags) {} - using basic_text_iarchive::load_override; + using basic_text_iarchive::load_override; - void load_override(boost::archive::object_id_type & t, int) {} + void load_override(boost::archive::object_id_type &t) {} - // class_name_type can't be handled here as it depends upon the - // char type used by the stream. So require the derived implementation. - // derived in this case is xml_iarchive_impl or base .. - using base::load_override; + // class_name_type can't be handled here as it depends upon the + // char type used by the stream. So require the derived implementation. + // derived in this case is xml_iarchive_impl or base .. + using base::load_override; - void load_override(const char *str, int v) { - StringReader sr(basic_text_iprimitive::is); - sr >> str; - } + void load_override(const char *str) { + StringReader sr(basic_text_iprimitive::is); + sr >> str; + } - ~text_iarchive() {}; + ~text_iarchive() {}; }; typedef text_iarchive naked_text_iarchive; -//typedef boost::archive::detail::polymorphic_iarchive_route< -//naked_text_iarchive +// typedef boost::archive::detail::polymorphic_iarchive_route< +// naked_text_iarchive //> polymorphic_text_iarchive; +class text_oarchive : public boost::archive::text_oarchive_impl { + typedef text_oarchive Archive; + typedef boost::archive::text_oarchive_impl base; + // give serialization implementation access to this class + friend class boost::archive::detail::interface_oarchive; + friend class boost::archive::basic_text_oarchive; + friend class boost::archive::save_access; -class text_oarchive : - public boost::archive::text_oarchive_impl -{ - typedef text_oarchive Archive; - typedef boost::archive::text_oarchive_impl base; - - // give serialization implementation access to this class - friend class boost::archive::detail::interface_oarchive; - friend class boost::archive::basic_text_oarchive; - friend class boost::archive::save_access; public: - text_oarchive(std::ostream & os, unsigned int flags = 0) : - boost::archive::text_oarchive_impl(os, flags) - {} + text_oarchive(std::ostream &os, unsigned int flags = 0) + : boost::archive::text_oarchive_impl(os, flags) {} - using basic_text_oarchive::save_override; + using basic_text_oarchive::save_override; - void save_override(const char *str, int v) { - basic_text_oprimitive::save(str); - } + void save_override(const char *str) { basic_text_oprimitive::save(str); } - ~text_oarchive(){} + ~text_oarchive() {} }; -//typedef boost::archive::detail::polymorphic_oarchive_route< -//boost::archive::text_oarchive_impl +// typedef boost::archive::detail::polymorphic_oarchive_route< +// boost::archive::text_oarchive_impl //> polymorphic_text_oarchive; - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // SIMPLE HUMAN READABLE TEXT // -class hrt_iarchive : - public boost::archive::text_iarchive_impl -{ - typedef hrt_iarchive Archive; - typedef boost::archive::text_iarchive_impl base; +class hrt_iarchive : public boost::archive::text_iarchive_impl { + typedef hrt_iarchive Archive; + typedef boost::archive::text_iarchive_impl base; + + // give serialization implementation access to this class + friend class boost::archive::detail::interface_iarchive; + friend class boost::archive::basic_text_iarchive; + friend class boost::archive::load_access; - // give serialization implementation access to this class - friend class boost::archive::detail::interface_iarchive; - friend class boost::archive::basic_text_iarchive; - friend class boost::archive::load_access; public: - hrt_iarchive(std::istream & is, unsigned int flags = 0) : - base(is, flags | boost::archive::no_header ) - {} + hrt_iarchive(std::istream &is, unsigned int flags = 0) + : base(is, flags | boost::archive::no_header) {} - using basic_text_iarchive::load_override; + using basic_text_iarchive::load_override; - // hide all archive props // - void load_override( boost::archive::object_id_type & t, int) {} - void load_override( boost::archive::object_reference_type & t, int) {} - void load_override( boost::archive::version_type & t, int) {} - void load_override( boost::archive::class_id_type & t, int) {} - void load_override( boost::archive::class_id_optional_type & t, int) {} - void load_override( boost::archive::class_id_reference_type & t, int){} - void load_override( boost::archive::class_name_type & t, int) {} - void load_override( boost::archive::tracking_type & t, int) {} + // hide all archive props // + void load_override(boost::archive::object_id_type &t) {} + void load_override(boost::archive::object_reference_type &t) {} + void load_override(boost::archive::version_type &t) {} + void load_override(boost::archive::class_id_type &t) {} + void load_override(boost::archive::class_id_optional_type &t) {} + void load_override(boost::archive::class_id_reference_type &t) {} + void load_override(boost::archive::class_name_type &t) {} + void load_override(boost::archive::tracking_type &t) {} - // class_name_type can't be handled here as it depends upon the - // char type used by the stream. So require the derived implementation. - // derived in this case is xml_iarchive_impl or base .. - using base::load_override; + // class_name_type can't be handled here as it depends upon the + // char type used by the stream. So require the derived implementation. + // derived in this case is xml_iarchive_impl or base .. + using base::load_override; - void load_override(const char *str, int v) { - StringReader sr(basic_text_iprimitive::is); - sr >> str; - } + void load_override(const char *str) { + StringReader sr(basic_text_iprimitive::is); + sr >> str; + } - ~hrt_iarchive() {}; + ~hrt_iarchive() {}; }; +class hrt_oarchive : public boost::archive::text_oarchive_impl { + typedef hrt_oarchive Archive; + typedef boost::archive::text_oarchive_impl base; -class hrt_oarchive : - public boost::archive::text_oarchive_impl - { - typedef hrt_oarchive Archive; - typedef boost::archive::text_oarchive_impl base; + // give serialization implementation access to this class + friend class boost::archive::detail::interface_oarchive; + friend class boost::archive::basic_text_oarchive; + friend class boost::archive::save_access; - // give serialization implementation access to this class - friend class boost::archive::detail::interface_oarchive; - friend class boost::archive::basic_text_oarchive; - friend class boost::archive::save_access; - public: - hrt_oarchive(std::ostream & os, unsigned int flags = 0) : - base(os, flags | boost::archive::no_header ) - {} +public: + hrt_oarchive(std::ostream &os, unsigned int flags = 0) + : base(os, flags | boost::archive::no_header) {} - using basic_text_oarchive::save_override; - - void save_override(const boost::archive::object_id_type & t, int) {} - void save_override(const boost::archive::object_reference_type & t, int) {} - void save_override(const boost::archive::version_type & t, int) {} - void save_override(const boost::archive::class_id_type & t, int) {} - void save_override(const boost::archive::class_id_optional_type & t, int) {} - void save_override(const boost::archive::class_id_reference_type & t, int){} - void save_override(const boost::archive::class_name_type & t, int) {} - void save_override(const boost::archive::tracking_type & t, int) {} - - - void save_override(const char *str, int v) { - basic_text_oprimitive::save(str); - } - - ~hrt_oarchive(){} - }; + using basic_text_oarchive::save_override; + void save_override(const boost::archive::object_id_type &t) {} + void save_override(const boost::archive::object_reference_type &t) {} + void save_override(const boost::archive::version_type &t) {} + void save_override(const boost::archive::class_id_type &t) {} + void save_override(const boost::archive::class_id_optional_type &t) {} + void save_override(const boost::archive::class_id_reference_type &t) {} + void save_override(const boost::archive::class_name_type &t) {} + void save_override(const boost::archive::tracking_type &t) {} + void save_override(const char *str) { basic_text_oprimitive::save(str); } + ~hrt_oarchive() {} +}; //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -690,76 +597,61 @@ class hrt_oarchive : // any serializable class. Intended to be useful as a debugging aid. class log_archive : /* protected ? */ - public boost::archive::xml_oarchive_impl -{ - typedef boost::archive::xml_oarchive_impl base; - typedef log_archive Archive; - // give serialization implementation access to this clas - friend class boost::archive::detail::interface_oarchive; - friend class boost::archive::basic_xml_oarchive; - friend class boost::archive::save_access; + public boost::archive::xml_oarchive_impl { + typedef boost::archive::xml_oarchive_impl base; + typedef log_archive Archive; + // give serialization implementation access to this clas + friend class boost::archive::detail::interface_oarchive; + friend class boost::archive::basic_xml_oarchive; + friend class boost::archive::save_access; public: + void save_override(const char *str) { + // Do not save any human decoration string // + // basic_text_oprimitive::save(str); + } - void save_override(const char *str, int v) { - // Do not save any human decoration string // - // basic_text_oprimitive::save(str); - } + template void save_override(T &t) { + base::save_override(boost::serialization::make_nvp(NULL, t)); + } - template - void save_override(T & t, BOOST_PFTO int){ - base::save_override(boost::serialization::make_nvp(NULL, t), 0); - } + // activate this if you want to trap non nvp objects // + // template + // void save_override(T & t) + // { + // BOOST_MPL_ASSERT((boost::serialization::is_wrapper< T >)); + // // this->detail_common_oarchive::save_override(t); + // } - // activate this if you want to trap non nvp objects // - // template - // void save_override(T & t, BOOST_PFTO int) - // { - // BOOST_MPL_ASSERT((boost::serialization::is_wrapper< T >)); - // // this->detail_common_oarchive::save_override(t, 0); - // } - - template - void save_override(const boost::serialization::nvp & t, int){ - base::save_override(t, 0); - } - - - // specific overrides for attributes - not name value pairs so we - // want to trap them before the above "fall through" - // since we don't want to see these in the output - make them no-ops. - void save_override(const boost::archive::object_id_type & t, int) {} - void save_override(const boost::archive::object_reference_type & t, int) {} - void save_override(const boost::archive::version_type & t, int) {} - void save_override(const boost::archive::class_id_type & t, int) {} - void save_override(const boost::archive::class_id_optional_type & t, int) {} - void save_override(const boost::archive::class_id_reference_type & t, int){} - void save_override(const boost::archive::class_name_type & t, int) {} - void save_override(const boost::archive::tracking_type & t, int) {} + template void save_override(const boost::serialization::nvp &t) { + base::save_override(t); + } + // specific overrides for attributes - not name value pairs so we + // want to trap them before the above "fall through" + // since we don't want to see these in the output - make them no-ops. + void save_override(const boost::archive::object_id_type &t) {} + void save_override(const boost::archive::object_reference_type &t) {} + void save_override(const boost::archive::version_type &t) {} + void save_override(const boost::archive::class_id_type &t) {} + void save_override(const boost::archive::class_id_optional_type &t) {} + void save_override(const boost::archive::class_id_reference_type &t) {} + void save_override(const boost::archive::class_name_type &t) {} + void save_override(const boost::archive::tracking_type &t) {} public: - log_archive(std::ostream & os, unsigned int flags = 0) : - boost::archive::xml_oarchive_impl( - os, - flags | boost::archive::no_header - ) - {} + log_archive(std::ostream &os, unsigned int flags = 0) + : boost::archive::xml_oarchive_impl( + os, flags | boost::archive::no_header) {} }; -//typedef boost::archive::detail::polymorphic_oarchive_route< -//boost::archive::xml_oarchive_impl +// typedef boost::archive::detail::polymorphic_oarchive_route< +// boost::archive::xml_oarchive_impl //> polymorphic_log_archive; +} // namespace Archive - - -} // Archive - - - -} // uLib - +} // namespace uLib ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::xml_iarchive) ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::xml_oarchive) @@ -769,13 +661,10 @@ ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::hrt_iarchive) ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::hrt_oarchive) ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::log_archive) -//ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_xml_iarchive) -//ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_xml_oarchive) -//ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_text_iarchive) -//ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_text_oarchive) -//ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_log_archive) - - - +// ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_xml_iarchive) +// ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_xml_oarchive) +// ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_text_iarchive) +// ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_text_oarchive) +// ULIB_SERIALIZATION_REGISTER_ARCHIVE(uLib::Archive::polymorphic_log_archive) #endif // U_CORE_ARCHIVES_H diff --git a/src/Core/CMakeLists.txt b/src/Core/CMakeLists.txt index 296f1ce..bbbe149 100644 --- a/src/Core/CMakeLists.txt +++ b/src/Core/CMakeLists.txt @@ -1,10 +1,9 @@ -set(HEADERS Options.h - StaticInterface.h) +set(HEADERS Archives.h Array.h Collection.h Debug.h Export.h Function.h Macros.h Mpl.h Object.h Options.h Serializable.h Signal.h Singleton.h SmartPointer.h StaticInterface.h StringReader.h Types.h Uuid.h Vector.h) -set(SOURCES Options.cpp) +set(SOURCES Archives.cpp Debug.cpp Object.cpp Options.cpp Serializable.cpp Signal.cpp Uuid.cpp) -set(LIBRARIES ${Boost_PROGRAM_OPTIONS_LIBRARY}) +set(LIBRARIES Boost::program_options) set(libname ${PACKAGE_LIBPREFIX}Core) set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE) @@ -23,5 +22,7 @@ install(TARGETS ${libname} install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Core) - - +if(BUILD_TESTING) + include(uLibTargetMacros) + add_subdirectory(testing) +endif() diff --git a/src/Core/Export.h b/src/Core/Export.h index 1b43cd0..88c6ef6 100644 --- a/src/Core/Export.h +++ b/src/Core/Export.h @@ -23,95 +23,85 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_CORE_EXPORT_H #define U_CORE_EXPORT_H -#include #include // NULL #include +#include #include -#include #include +#include #include -#include #include -#include +#include #include +#include -#include // for guid_defined only -#include #include +#include // for guid_defined only #include #include +#include #include - #include "Core/Archives.h" //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// - - namespace uLib { namespace Archive { namespace detail { namespace extra_detail { -template -struct guid_initializer -{ - void export_guid(mpl::false_) const { - // generates the statically-initialized objects whose constructors - // register the information allowing serialization of T objects - // through pointers to their base classes. - boost::archive::detail:: - instantiate_ptr_serialization((T*)0, 0, - uLib::Archive::detail::adl_tag()); - } - void export_guid(mpl::true_) const { - } - guid_initializer const & export_guid() const { - BOOST_STATIC_WARNING(boost::is_polymorphic< T >::value); - // note: exporting an abstract base class will have no effect - // and cannot be used to instantitiate serialization code - // (one might be using this in a DLL to instantiate code) - //BOOST_STATIC_WARNING(! boost::serialization::is_abstract< T >::value); - export_guid(boost::serialization::is_abstract< T >()); - return *this; - } +template struct guid_initializer { + void export_guid(boost::mpl::false_) const { + // generates the statically-initialized objects whose constructors + // register the information allowing serialization of T objects + // through pointers to their base classes. + boost::archive::detail::instantiate_ptr_serialization( + (T *)0, 0, uLib::Archive::detail::adl_tag()); + } + void export_guid(boost::mpl::true_) const {} + guid_initializer const &export_guid() const { + BOOST_STATIC_WARNING(boost::is_polymorphic::value); + // note: exporting an abstract base class will have no effect + // and cannot be used to instantitiate serialization code + // (one might be using this in a DLL to instantiate code) + // BOOST_STATIC_WARNING(! boost::serialization::is_abstract< T >::value); + export_guid(boost::serialization::is_abstract()); + return *this; + } }; -template -struct init_guid; +template struct init_guid; -} // anonymous +} // namespace extra_detail } // namespace detail } // namespace Archive } // namespace uLib - - -#define ULIB_CLASS_EXPORT_IMPLEMENT(T) \ - namespace uLib { \ - namespace Archive { \ - namespace detail { \ - namespace extra_detail { \ - template<> \ - struct init_guid< T > { \ - static guid_initializer< T > const & g; \ - }; \ - guid_initializer< T > const & init_guid< T >::g = \ - ::boost::serialization::singleton< \ - guid_initializer< T > \ - >::get_mutable_instance().export_guid(); \ - }}}} \ -/**/ +#define ULIB_CLASS_EXPORT_IMPLEMENT(T) \ + namespace uLib { \ + namespace Archive { \ + namespace detail { \ + namespace extra_detail { \ + template <> struct init_guid { \ + static guid_initializer const &g; \ + }; \ + guid_initializer const &init_guid::g = \ + ::boost::serialization::singleton< \ + guid_initializer>::get_mutable_instance() \ + .export_guid(); \ + } \ + } \ + } \ + } \ + /**/ #endif // EXPORT_H diff --git a/src/Core/Object.cpp b/src/Core/Object.cpp index 56ec798..3998ce2 100644 --- a/src/Core/Object.cpp +++ b/src/Core/Object.cpp @@ -110,11 +110,13 @@ bool Object::addSignalImpl(SignalBase *sig, GenericMFPtr fptr, const char *name) { ObjectPrivate::Signal s = {fptr, std::string(name), sig}; d->sigv.push_back(s); + return true; } bool Object::addSlotImpl(GenericMFPtr fptr, const char *name) { ObjectPrivate::Slot s = {fptr, std::string(name)}; d->slov.push_back(s); + return true; } SignalBase *Object::findSignalImpl(const GenericMFPtr &fptr) const { diff --git a/src/Core/Object.h b/src/Core/Object.h index 5d1b51e..4f4a278 100644 --- a/src/Core/Object.h +++ b/src/Core/Object.h @@ -107,6 +107,7 @@ public: // if(sig && slo) // return Object::connect(sig,slo->operator ()(),receiver); // else return false; + return false; } // Qt5 style connector // @@ -119,11 +120,13 @@ public: typename FunctionPointer::SignalSignature> SigT; ConnectSignal(sigb, slof, receiver); + return true; } template static inline bool connect(SignalBase *sigb, FuncT slof, Object *receiver) { ConnectSignal(sigb, slof, receiver); + return true; } template @@ -139,7 +142,7 @@ public: } template inline bool addSlot(FuncT fun, const char *name) { - this->addSlotImpl(GenericMFPtr(fun), name); + return this->addSlotImpl(GenericMFPtr(fun), name); } template diff --git a/src/Core/Signal.h b/src/Core/Signal.h index 624dd49..ee0ad99 100644 --- a/src/Core/Signal.h +++ b/src/Core/Signal.h @@ -23,21 +23,19 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_CORE_SIGNAL_H #define U_CORE_SIGNAL_H #include #include -#include #include +#include #include "Function.h" +#include - - +using namespace boost::placeholders; //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -48,12 +46,12 @@ #define slots #define signals /*virtual void init_signals();*/ public #define emit -#define SLOT(a) BOOST_STRINGIZE(a) -#define SIGNAL(a) BOOST_STRINGIZE(a) +#define SLOT(a) BOOST_STRINGIZE(a) +#define SIGNAL(a) BOOST_STRINGIZE(a) -#define _ULIB_DETAIL_SIGNAL_EMIT(_name,...) \ - static BOOST_AUTO(sig,this->findOrAddSignal(&_name)); \ - sig->operator()(__VA_ARGS__); +#define _ULIB_DETAIL_SIGNAL_EMIT(_name, ...) \ + static BOOST_AUTO(sig, this->findOrAddSignal(&_name)); \ + sig->operator()(__VA_ARGS__); /** * Utility macro to implement signal emission implementa una delle seguenti: @@ -66,103 +64,105 @@ * // cast automatico // * static BOOST_AUTO(sig,this->findOrAddSignal(&Ob1::V0)); * sig->operator()(); -*/ -#define ULIB_SIGNAL_EMIT(_name,...) _ULIB_DETAIL_SIGNAL_EMIT(_name,__VA_ARGS__) - + */ +#define ULIB_SIGNAL_EMIT(_name, ...) \ + _ULIB_DETAIL_SIGNAL_EMIT(_name, __VA_ARGS__) namespace uLib { - // A boost::signal wrapper structure /////////////////////////////////////////// // TODO ... typedef boost::signals2::signal_base SignalBase; -template -struct Signal { - typedef boost::signals2::signal type; +template struct Signal { + typedef boost::signals2::signal type; }; - - //////////////////////////////////////////////////////////////////////////////// - namespace detail { +template struct ConnectSignal {}; -template -struct ConnectSignal {}; - -template -struct ConnectSignal< FuncT, 0 > { - static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef typename Signal::SignalSignature>::type SigT; - reinterpret_cast(sigb)->connect(slof); - } +template struct ConnectSignal { + static void connect(SignalBase *sigb, FuncT slof, + typename FunctionPointer::Object *receiver) { + typedef + typename Signal::SignalSignature>::type + SigT; + reinterpret_cast(sigb)->connect(slof); + } }; -template -struct ConnectSignal< FuncT, 1 > { - static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef typename Signal::SignalSignature>::type SigT; - reinterpret_cast(sigb)->connect(boost::bind(slof,receiver)); - } +template struct ConnectSignal { + static void connect(SignalBase *sigb, FuncT slof, + typename FunctionPointer::Object *receiver) { + typedef + typename Signal::SignalSignature>::type + SigT; + reinterpret_cast(sigb)->connect(boost::bind(slof, receiver)); + } }; -template -struct ConnectSignal< FuncT, 2 > { - static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef typename Signal::SignalSignature>::type SigT; - reinterpret_cast(sigb)->connect(boost::bind(slof,receiver,_1)); - } +template struct ConnectSignal { + static void connect(SignalBase *sigb, FuncT slof, + typename FunctionPointer::Object *receiver) { + typedef + typename Signal::SignalSignature>::type + SigT; + reinterpret_cast(sigb)->connect(boost::bind(slof, receiver, _1)); + } }; -template -struct ConnectSignal< FuncT, 3 > { - static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef typename Signal::SignalSignature>::type SigT; - reinterpret_cast(sigb)->connect(boost::bind(slof,receiver,_1,_2)); - } +template struct ConnectSignal { + static void connect(SignalBase *sigb, FuncT slof, + typename FunctionPointer::Object *receiver) { + typedef + typename Signal::SignalSignature>::type + SigT; + reinterpret_cast(sigb)->connect( + boost::bind(slof, receiver, _1, _2)); + } }; -template -struct ConnectSignal< FuncT, 4 > { - static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef typename Signal::SignalSignature>::type SigT; - reinterpret_cast(sigb)->connect(boost::bind(slof,receiver,_1,_2,_3)); - } +template struct ConnectSignal { + static void connect(SignalBase *sigb, FuncT slof, + typename FunctionPointer::Object *receiver) { + typedef + typename Signal::SignalSignature>::type + SigT; + reinterpret_cast(sigb)->connect( + boost::bind(slof, receiver, _1, _2, _3)); + } }; -template -struct ConnectSignal< FuncT, 5 > { - static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef typename Signal::SignalSignature>::type SigT; - reinterpret_cast(sigb)->connect(boost::bind(slof,receiver,_1,_2,_3,_4)); - } +template struct ConnectSignal { + static void connect(SignalBase *sigb, FuncT slof, + typename FunctionPointer::Object *receiver) { + typedef + typename Signal::SignalSignature>::type + SigT; + reinterpret_cast(sigb)->connect( + boost::bind(slof, receiver, _1, _2, _3, _4)); + } }; +} // namespace detail -} // detail - - - -template -SignalBase *NewSignal(FuncT f) { - // seems to work wow ! - return new Signal::type; +template SignalBase *NewSignal(FuncT f) { + // seems to work wow ! + return new Signal::type; } template -void ConnectSignal(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) -{ - detail::ConnectSignal< FuncT, FunctionPointer::arity >::connect(sigb,slof,receiver); +void ConnectSignal(SignalBase *sigb, FuncT slof, + typename FunctionPointer::Object *receiver) { + detail::ConnectSignal::arity>::connect( + sigb, slof, receiver); } - - - -} // uLib +} // namespace uLib #endif // SIGNAL_H diff --git a/src/Core/testing/CMakeLists.txt b/src/Core/testing/CMakeLists.txt index 05d28af..c045b98 100644 --- a/src/Core/testing/CMakeLists.txt +++ b/src/Core/testing/CMakeLists.txt @@ -24,9 +24,8 @@ set( TESTS set(LIBRARIES ${PACKAGE_LIBPREFIX}Core ${PACKAGE_LIBPREFIX}Math - ${Boost_SERIALIZATION_LIBRARY} - ${Boost_SIGNALS_LIBRARY} - ${Boost_PROGRAM_OPTIONS_LIBRARY} + Boost::serialization + Boost::program_options ${ROOT_LIBRARIES} ) -uLib_add_tests(${uLib-module}) +uLib_add_tests(Core) diff --git a/src/Core/testing/SerializeDreadDiamondTest.cpp b/src/Core/testing/SerializeDreadDiamondTest.cpp index 5bd3a57..2e455e0 100644 --- a/src/Core/testing/SerializeDreadDiamondTest.cpp +++ b/src/Core/testing/SerializeDreadDiamondTest.cpp @@ -23,13 +23,10 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - -#include #include -#include +#include #include +#include #include "Core/Object.h" @@ -37,78 +34,43 @@ using namespace uLib; - - - - - - -struct A : Object { - uLibTypeMacro(A,Object) - A() : numa(5552368) {} - int numa; +struct A : Object { + uLibTypeMacro(A, Object) A() : numa(5552368) {} + int numa; }; - ULIB_SERIALIZABLE_OBJECT(A) -ULIB_SERIALIZE_OBJECT(A,Object) { - ar & AR(numa); -} +ULIB_SERIALIZE_OBJECT(A, Object) { ar &AR(numa); } struct B : virtual Object { - uLibTypeMacro(B,Object) - B() : numb(5552369) {} - int numb; + uLibTypeMacro(B, Object) B() : numb(5552369) {} + int numb; }; ULIB_SERIALIZABLE_OBJECT(B) -ULIB_SERIALIZE_OBJECT(B,Object) { ar & AR(numb); } - +ULIB_SERIALIZE_OBJECT(B, Object) { ar &AR(numb); } struct C : B { - uLibTypeMacro(C,B) - C() : numc(5552370) {} - int numc; + uLibTypeMacro(C, B) C() : numc(5552370) {} + int numc; }; ULIB_SERIALIZABLE_OBJECT(C) -ULIB_SERIALIZE_OBJECT(C,B) { ar & AR(numc); } +ULIB_SERIALIZE_OBJECT(C, B) { ar &AR(numc); } -struct D : A,B { - uLibTypeMacro(D,A,B) +struct D : A, B { + uLibTypeMacro(D, A, B) - D() : numd(5552371) {} - int numd; + D() + : numd(5552371) {} + int numd; }; ULIB_SERIALIZABLE_OBJECT(D) -ULIB_SERIALIZE_OBJECT(D,A,B) { ar & AR(numd); } +ULIB_SERIALIZE_OBJECT(D, A, B) { ar &AR(numd); } +int main() { + A o; - -main() { - A o; o.init_properties(); - - Archive::xml_oarchive(std::cout) << NVP(o); - + Archive::xml_oarchive(std::cout) << NVP(o); } - - - - - - - - - - - - - - - - - - - - diff --git a/src/Core/testing/SerializeTest.cpp b/src/Core/testing/SerializeTest.cpp index c0466cc..31a5bc0 100644 --- a/src/Core/testing/SerializeTest.cpp +++ b/src/Core/testing/SerializeTest.cpp @@ -23,20 +23,16 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - -#include #include +#include -#include "Core/Object.h" #include "Core/Archives.h" +#include "Core/Object.h" #include "testing-prototype.h" using namespace uLib; - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -45,63 +41,51 @@ using namespace uLib; struct V3f { - float x,y,z; - V3f() - { x = y = z =0; } + float x, y, z; + V3f() { x = y = z = 0; } - V3f(float x, float y, float z) : - x(x), y(y), z(z) {} + V3f(float x, float y, float z) : x(x), y(y), z(z) {} - template - void serialize (Archive &ar,unsigned int v) { - ar - & "<" & NVP(x) & NVP(y) & NVP(z) & ">"; - } + template void serialize(Archive &ar, unsigned int v) { + ar & "<" & NVP(x) & NVP(y) & NVP(z) & ">"; + } }; ULIB_CLASS_EXPORT_KEY(V3f); ULIB_CLASS_EXPORT_IMPLEMENT(V3f); - -inline std::ostream & -operator <<(std::ostream &o, const V3f &v) { - Archive::hrt_oarchive(o) << v; - return o; +inline std::ostream &operator<<(std::ostream &o, const V3f &v) { + Archive::hrt_oarchive(o) << v; + return o; } -inline std::istream & -operator >>(std::istream &is, V3f &v) { - Archive::hrt_iarchive(is) >> v; - return is; +inline std::istream &operator>>(std::istream &is, V3f &v) { + Archive::hrt_iarchive(is) >> v; + return is; } - - - int test_V3f() { - // testing human readble archive with simple serializable structure // + // testing human readble archive with simple serializable structure // - V3f v1(1,2,3),v2,v3,v4; - std::cout << "v --> " << v1 << "\n"; + V3f v1(1, 2, 3), v2, v3, v4; + std::cout << "v --> " << v1 << "\n"; - std::stringstream ss; ss << v1; - std::cout << "ss.v --> " << ss.str() << "\n"; + std::stringstream ss; + ss << v1; + std::cout << "ss.v --> " << ss.str() << "\n"; - Archive::hrt_iarchive ar(ss); ar >> v2; - std::cout << "v2 --> " << v2 << "\n"; + Archive::hrt_iarchive ar(ss); + ar >> v2; + std::cout << "v2 --> " << v2 << "\n"; - std::stringstream("<2 3 4>") >> v3; - std::cout << "v3 --> " << v3 << "\n"; + std::stringstream("<2 3 4>") >> v3; + std::cout << "v3 --> " << v3 << "\n"; - // std::cout << "insert V3f string to parse: "; std::cin >> v4; - // std::cout << "v4 --> " << v4 << "\n"; - return (1); + // std::cout << "insert V3f string to parse: "; std::cin >> v4; + // std::cout << "v4 --> " << v4 << "\n"; + return (1); } - - - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -109,104 +93,72 @@ int test_V3f() { // OBJECT SERIALIZATION // class A : public virtual Object { - uLibTypeMacro(A,Object) - ULIB_SERIALIZE_ACCESS -public: - A() : m_a(5552368) {} +uLibTypeMacro(A, Object) ULIB_SERIALIZE_ACCESS public : A() : m_a(5552368) {} - properties() { - std::string p_a; - }; + void init_properties(); + std::string p_a; + + uLibRefMacro(a, int); - uLibRefMacro (a,int); private: - int m_a; + int m_a; }; -void A::init_properties() { - $_init(); - $$.p_a = "A property string"; -} +void A::init_properties() { p_a = "A property string"; } ULIB_SERIALIZABLE_OBJECT(A) -ULIB_SERIALIZE_OBJECT(A,Object) { - ar - & "Object A : " - & "--> m_a = " & AR(m_a) - & "\n"; +ULIB_SERIALIZE_OBJECT(A, Object) { + ar & "Object A : " & "--> m_a = " & AR(m_a) & "\n" & "Object A properties: " & + "---> p_a = " & AR(p_a) & "\n"; } -ULIB_SERIALIZE_OBJECT_PROPS(A) { - ar - & "Object A properties: " - & "---> p_a = " & AR(p_a) & "\n"; -} - - - int testing_xml_class() { - A a; a.init_properties(); + A a; + a.init_properties(); - { - std::ofstream file("test.xml"); - Archive::xml_oarchive(file) << NVP(a); - } - a.a() = 0; - a.$$.p_a = "zero string"; - { - std::ifstream file("test.xml"); - Archive::xml_iarchive(file) >> NVP(a); - } + { + std::ofstream file("test.xml"); + Archive::xml_oarchive(file) << NVP(a); + } + a.a() = 0; + a.p_a = "zero string"; + { + std::ifstream file("test.xml"); + Archive::xml_iarchive(file) >> NVP(a); + } - Archive::xml_oarchive(std::cout) << NVP(a); - return ( a.a() == 5552368 && a.$$.p_a == "A property string" ); + Archive::xml_oarchive(std::cout) << NVP(a); + return (a.a() == 5552368 && a.p_a == "A property string"); } int testing_hrt_class() { - A a; a.init_properties(); + A a; + a.init_properties(); - { - std::ofstream file("test.xml"); - Archive::hrt_oarchive(file) << NVP(a); - } - a.a() = 0; - a.$$.p_a = "zero string"; - { - // ERRORE FIX ! - // std::ifstream file("test.xml"); - // Archive::hrt_iarchive(file) >> NVP(a); - } + { + std::ofstream file("test.xml"); + Archive::hrt_oarchive(file) << NVP(a); + } + a.a() = 0; + a.p_a = "zero string"; + { + // ERRORE FIX ! + // std::ifstream file("test.xml"); + // Archive::hrt_iarchive(file) >> NVP(a); + } - Archive::hrt_oarchive(std::cout) << NVP(a); - return ( a.a() == 5552368 && a.$$.p_a == "A property string" ); + Archive::hrt_oarchive(std::cout) << NVP(a); + return (a.a() == 5552368 && a.p_a == "A property string"); } - - - - - int main() { - BEGIN_TESTING(Serialize Test); + BEGIN_TESTING(Serialize Test); - TEST1( test_V3f() ); - TEST1( testing_xml_class() ); - // testing_hrt_class(); ///// << ERRORE in HRT with properties + TEST1(test_V3f()); + TEST1(testing_xml_class()); + // testing_hrt_class(); ///// << ERRORE in HRT with properties - END_TESTING; + END_TESTING; } - - - - - - - - - - - - - diff --git a/src/Core/testing/StaticInterfaceTest.cpp b/src/Core/testing/StaticInterfaceTest.cpp index a618c44..c4e8b1d 100644 --- a/src/Core/testing/StaticInterfaceTest.cpp +++ b/src/Core/testing/StaticInterfaceTest.cpp @@ -23,90 +23,73 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - #include #include "testing-prototype.h" #include - - namespace uLib { //// INTERFACE TO COMPLEX CLASS ///// namespace Interface { struct Test { - MAKE_TRAITS - template void check_structural() { - uLibCheckFunction(Self,test,bool,int,float); - uLibCheckMember(Self,testmemb,int); - } + MAKE_TRAITS + template void check_structural() { + uLibCheckFunction(Self, test, bool, int, float); + uLibCheckMember(Self, testmemb, int); + } }; -} +} // namespace Interface struct Test { - bool test(int i, float f){} - int testmemb; + bool test(int i, float f) { return true; } + int testmemb; }; - - //// INTERFAC TO SIMPLE CLASS /////////// namespace Interface { struct Simple { - MAKE_TRAITS - template void check_structural() { - uLibCheckMember(Self,memb1,int); - uLibCheckMember(Self,memb2,float); - } + MAKE_TRAITS + template void check_structural() { + uLibCheckMember(Self, memb1, int); + uLibCheckMember(Self, memb2, float); + } }; -} +} // namespace Interface struct Simple { - int memb1; - float memb2; + int memb1; + float memb2; }; - ///////////////////////// -template -class UseTest { +template class UseTest { public: - UseTest() { - Interface::IsA(); - T t; - int i; float f; - t.test(i,f); - } + UseTest() { + Interface::IsA(); + T t; + int i; + float f; + t.test(i, f); + } }; -template -class UseSimple { +template class UseSimple { public: - UseSimple() { - Interface::IsA(); - } + UseSimple() { Interface::IsA(); } }; +} // namespace uLib +int main() { + BEGIN_TESTING(Static Interface); + uLib::UseTest u; + + uLib::UseSimple s; + + END_TESTING; } - -int main() -{ - BEGIN_TESTING(Static Interface); - - - - uLib::UseTest u; - - uLib::UseSimple s; - - END_TESTING; -} - diff --git a/src/Detectors/CMakeLists.txt b/src/Detectors/CMakeLists.txt index 7d03249..0022084 100644 --- a/src/Detectors/CMakeLists.txt +++ b/src/Detectors/CMakeLists.txt @@ -5,3 +5,8 @@ set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Detectors PARENT_SCOPE) install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Detectors) + +if(BUILD_TESTING) + include(uLibTargetMacros) + add_subdirectory(testing) +endif() diff --git a/src/Detectors/testing/CMakeLists.txt b/src/Detectors/testing/CMakeLists.txt index d3bff8f..12c7566 100644 --- a/src/Detectors/testing/CMakeLists.txt +++ b/src/Detectors/testing/CMakeLists.txt @@ -1,18 +1,15 @@ # TESTS set( TESTS - GDMLSolidTest +# GDMLSolidTest HierarchicalEncodingTest ) -#set(LIBRARIES -# ${PACKAGE_LIBPREFIX}Core -# ${PACKAGE_LIBPREFIX}Math -# ${PACKAGE_LIBPREFIX}Detectors -# ${Boost_SERIALIZATION_LIBRARY} -# ${Boost_SIGNALS_LIBRARY} -# ${Boost_PROGRAM_OPTIONS_LIBRARY} -# ${Eigen_LIBRARY} -# ${Geant4_LIBRARIES} -# ${ROOT_LIBRARIES} -#) -uLib_add_tests(${uLib-module}) +set(LIBRARIES + ${PACKAGE_LIBPREFIX}Core + ${PACKAGE_LIBPREFIX}Math + Boost::serialization + Boost::program_options + Eigen3::Eigen + ${ROOT_LIBRARIES} +) +uLib_add_tests(Detectors) diff --git a/src/Math/CMakeLists.txt b/src/Math/CMakeLists.txt index 9aec9ee..bf35202 100644 --- a/src/Math/CMakeLists.txt +++ b/src/Math/CMakeLists.txt @@ -54,7 +54,8 @@ install(TARGETS ${libname} install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Math) -# TESTING -# include(uLibTargetMacros) -# add_subdirectory(testing) +if(BUILD_TESTING) + include(uLibTargetMacros) + add_subdirectory(testing) +endif() diff --git a/src/Math/testing/AccumulatorTest.cpp b/src/Math/testing/AccumulatorTest.cpp index 1c3c441..8118751 100644 --- a/src/Math/testing/AccumulatorTest.cpp +++ b/src/Math/testing/AccumulatorTest.cpp @@ -23,88 +23,90 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - #include "Math/Accumulator.h" #include "testing-prototype.h" #include +#include +#include - -//#include -//#include -//#include +// #include +// #include +// #include using namespace uLib; int test_ABTrim() { - Accumulator_ABTrim acc; + Accumulator_ABTrim acc; - acc.SetABTrim(1,1); + acc.SetABTrim(1, 1); - std::vector v; - for(float tmpf : {1,5,5,5,300}) v.push_back(tmpf); - //v << 1,5,5,5,300; + std::vector v; + for (float tmpf : {1, 5, 5, 5, 300}) + v.push_back(tmpf); + // v << 1,5,5,5,300; - for(std::vector::iterator itr=v.begin(); itr::iterator itr = v.begin(); itr < v.end(); itr++) + acc += *itr; - // TODO missing operator << - //std::cout << "Accumulating Trim(1,1) vector: " - // << v << " ... out = " << acc() << "\n"; - - return( acc() == 15.0 ); + // TODO missing operator << + // std::cout << "Accumulating Trim(1,1) vector: " + // << v << " ... out = " << acc() << "\n"; + return (acc() == 15.0); } - int test_Mean() { - Accumulator_Mean mean; - TRandom rnd; - const int c = 10000000; - std::vector v; - v.reserve(c); - for(int i=0;i mean; + TRandom rnd; + const int c = 10000000; + std::vector v; + v.reserve(c); + for (int i = 0; i < c; ++i) + v.push_back(rnd.Gaus(2000, 5)); + float m = 0; + for (int i = 0; i < c; ++i) + m += v[i]; + m /= c; + std::cout << "simple mean: " << m << "\n"; + for (int i = 0; i < c; ++i) + mean(v[i]); + std::cout << "mean pass: " << mean() << "\n"; + mean.AddPass(); + for (int i = 0; i < c; ++i) + mean(v[i]); + std::cout << "mean pass: " << mean() << "\n"; + mean.AddPass(); + for (int i = 0; i < c; ++i) + mean(v[i]); + std::cout << "mean pass: " << mean() << "\n"; + mean.AddPass(); + for (int i = 0; i < c; ++i) + mean(v[i]); + std::cout << "mean pass: " << mean() << "\n"; + mean.AddPass(); + for (int i = 0; i < c; ++i) + mean(v[i]); + std::cout << "mean pass: " << mean() << "\n"; + mean.AddPass(); + for (int i = 0; i < c; ++i) + mean(v[i]); + std::cout << "mean pass: " << mean() << "\n"; + mean.AddPass(); + for (int i = 0; i < c; ++i) + mean(v[i]); + std::cout << "mean pass: " << mean() << "\n"; + return 1; } - - - int main(void) { - BEGIN_TESTING(Accumulator); + BEGIN_TESTING(Accumulator); - //TEST1( test_ABTrim() ); - test_Mean(); + // TEST1( test_ABTrim() ); + test_Mean(); - END_TESTING; + END_TESTING; } diff --git a/src/Math/testing/CMakeLists.txt b/src/Math/testing/CMakeLists.txt index 256f58e..5c5c686 100644 --- a/src/Math/testing/CMakeLists.txt +++ b/src/Math/testing/CMakeLists.txt @@ -17,6 +17,8 @@ set(TESTS set(LIBRARIES ${PACKAGE_LIBPREFIX}Core ${PACKAGE_LIBPREFIX}Math + Boost::serialization + Eigen3::Eigen ) uLib_add_tests(Math) diff --git a/src/Math/testing/TriangleMeshTest.cpp b/src/Math/testing/TriangleMeshTest.cpp index bd89a03..f44be3e 100644 --- a/src/Math/testing/TriangleMeshTest.cpp +++ b/src/Math/testing/TriangleMeshTest.cpp @@ -23,30 +23,25 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - #include "testing-prototype.h" #include "Math/TriangleMesh.h" - +#include using namespace uLib; -int main() -{ - BEGIN_TESTING(Triangle Mesh); +int main() { + BEGIN_TESTING(Triangle Mesh); - TriangleMesh mesh; + TriangleMesh mesh; - mesh.AddPoint(Vector3f(0,0,0)); - mesh.AddPoint(Vector3f(0,1,0)); - mesh.AddPoint(Vector3f(1,0,0)); + mesh.AddPoint(Vector3f(0, 0, 0)); + mesh.AddPoint(Vector3f(0, 1, 0)); + mesh.AddPoint(Vector3f(1, 0, 0)); - mesh.AddTriangle(Vector3i(0,1,2)); + mesh.AddTriangle(Vector3i(0, 1, 2)); + mesh.PrintSelf(std::cout); - mesh.PrintSelf(std::cout); - - END_TESTING; + END_TESTING; } diff --git a/src/Math/testing/VoxRaytracerTest.cpp b/src/Math/testing/VoxRaytracerTest.cpp index af46a82..c9d5bb9 100644 --- a/src/Math/testing/VoxRaytracerTest.cpp +++ b/src/Math/testing/VoxRaytracerTest.cpp @@ -23,129 +23,114 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - -#include "Math/StructuredGrid.h" #include "Math/VoxRaytracer.h" +#include "Math/StructuredGrid.h" #include "testing-prototype.h" +#include using namespace uLib; - -int Vector4f0(Vector4f c) -{ +int Vector4f0(Vector4f c) { c(3) = 0; - if ( fabs(c(0)) < 0.001 && fabs(c(1)) < 0.001 && fabs(c(2)) < 0.001 ) + if (fabs(c(0)) < 0.001 && fabs(c(1)) < 0.001 && fabs(c(2)) < 0.001) return 0; else return 1; } -//bool Comapare(const &t1, const T2 &t2) +// bool Comapare(const &t1, const T2 &t2) //{ -// int out = 0; -// out += t1.vox_id != t2.vox_id; -// out += (fabs(t1.L) - fabs(t2.L)) > 0.001; -// return out == 0; -//} - +// int out = 0; +// out += t1.vox_id != t2.vox_id; +// out += (fabs(t1.L) - fabs(t2.L)) > 0.001; +// return out == 0; +// } typedef VoxRaytracer Raytracer; -int main() -{ - BEGIN_TESTING(Math VoxRaytracer); +int main() { + BEGIN_TESTING(Math VoxRaytracer); - StructuredGrid img(Vector3i(2,2,2)); - img.SetSpacing(Vector3f(2,2,2)); - img.SetPosition(Vector3f(-2,0,-2)); + StructuredGrid img(Vector3i(2, 2, 2)); + img.SetSpacing(Vector3f(2, 2, 2)); + img.SetPosition(Vector3f(-2, 0, -2)); - { - HLine3f line; - line.origin << 0.1, 4.1, 0.1, 1; - line.direction << 0.1, -0.1, 0.1,0; - Raytracer rt(img); - HPoint3f pt; - TEST1( rt.GetEntryPoint(line,pt) ); - TEST0( Vector4f0( pt - HPoint3f(0.2,4,0.2) ) ); + { + HLine3f line; + line.origin << 0.1, 4.1, 0.1, 1; + line.direction << 0.1, -0.1, 0.1, 0; + Raytracer rt(img); + HPoint3f pt; + TEST1(rt.GetEntryPoint(line, pt)); + TEST0(Vector4f0(pt - HPoint3f(0.2, 4, 0.2))); + } + + { + HLine3f line; + line.origin << 4, 0, 4, 1; + line.direction << -0.1, 0.1, -0.1, 0; + Raytracer rt(img); + HPoint3f pt; + TEST1(rt.GetEntryPoint(line, pt)); + TEST0(Vector4f0(pt - HPoint3f(2, 2, 2))); + } + + { // Test a point inside image // + StructuredGrid img(Vector3i(4, 4, 4)); + img.SetSpacing(Vector3f(2, 2, 2)); + img.SetPosition(Vector3f(-4, -4, -4)); + Raytracer ray(img); + HPoint3f pt; + HLine3f line; + line.origin = HPoint3f(-3, -3, -3); + // line.direction = HVector3f(1,1,1); // + TEST1(ray.GetEntryPoint(line, pt)); + TEST1(pt == HPoint3f(-3, -3, -3)); + + Raytracer::RayData rdata = + ray.TraceBetweenPoints(HPoint3f(-3, -3, -3), HPoint3f(3, 3, 3)); + for (const Raytracer::RayData::Element &el : rdata.Data()) { + std::cout << " " << el.vox_id << " , " << el.L << "\n"; } + } - { - HLine3f line; - line.origin << 4,0,4, 1; - line.direction << -0.1, 0.1, -0.1, 0; - Raytracer rt(img); - HPoint3f pt; - TEST1( rt.GetEntryPoint(line,pt) ); - TEST0( Vector4f0( pt - HPoint3f(2,2,2) ) ); - } + { + HPoint3f pt1(1, -0.5, 1); + HPoint3f pt2(1, 4.5, 1); + Raytracer rt(img); - { // Test a point inside image // - StructuredGrid img(Vector3i(4,4,4)); - img.SetSpacing(Vector3f(2,2,2)); - img.SetPosition(Vector3f(-4,-4,-4)); - Raytracer ray(img); - HPoint3f pt; - HLine3f line; - line.origin = HPoint3f(-3,-3,-3); - // line.direction = HVector3f(1,1,1); // - TEST1( ray.GetEntryPoint(line,pt) ); - TEST1( pt == HPoint3f(-3,-3,-3) ); + Raytracer::RayData ray = rt.TraceBetweenPoints(pt1, pt2); + TEST1(ray.Data().size() == 2); + TEST1(ray.Data().at(0).vox_id == 6); + TEST1(ray.Data().at(1).vox_id == 7); + ray.PrintSelf(std::cout); + } - Raytracer::RayData rdata = ray.TraceBetweenPoints(HPoint3f(-3,-3,-3), HPoint3f(3,3,3)); - for(const Raytracer::RayData::Element &el : rdata.Data()) - { - std::cout << " " << el.vox_id << " , " << el.L << "\n"; - } - } + { + HPoint3f pt1(5, 1, 1); + HPoint3f pt2(-3, 1, 1); + Raytracer rt(img); + Raytracer::RayData ray = rt.TraceBetweenPoints(pt1, pt2); + TEST1(ray.Data().size() == 2); + TEST1(ray.Data().at(0).vox_id == 6); + TEST1(ray.Data().at(1).vox_id == 4); + ray.PrintSelf(std::cout); + } - { - HPoint3f pt1(1,-0.5,1); - HPoint3f pt2(1,4.5,1); - Raytracer rt(img); + { + HPoint3f pt1(1, 1, 1); + HPoint3f pt2(-1, 3, -1); + Raytracer rt(img); - Raytracer::RayData ray = rt.TraceBetweenPoints(pt1,pt2); - TEST1( ray.Data().size() == 2 ); - TEST1( ray.Data().at(0).vox_id == 6 ); - TEST1( ray.Data().at(1).vox_id == 7 ); - ray.PrintSelf(std::cout); - } + Raytracer::RayData ray = rt.TraceBetweenPoints(pt1, pt2); + TEST1(ray.Data().size() == 4); + TEST1(ray.Data().at(0).vox_id == 6); + TEST1(ray.Data().at(1).vox_id == 4); + TEST1(ray.Data().at(2).vox_id == 5); + TEST1(ray.Data().at(3).vox_id == 1); + ray.PrintSelf(std::cout); + } - { - HPoint3f pt1(5,1,1); - HPoint3f pt2(-3,1,1); - Raytracer rt(img); - - Raytracer::RayData ray = rt.TraceBetweenPoints(pt1,pt2); - TEST1( ray.Data().size() == 2 ); - TEST1( ray.Data().at(0).vox_id == 6 ); - TEST1( ray.Data().at(1).vox_id == 4 ); - ray.PrintSelf(std::cout); - } - - { - HPoint3f pt1(1,1,1); - HPoint3f pt2(-1,3,-1); - Raytracer rt(img); - - Raytracer::RayData ray = rt.TraceBetweenPoints(pt1,pt2); - TEST1( ray.Data().size() == 4 ); - TEST1( ray.Data().at(0).vox_id == 6 ); - TEST1( ray.Data().at(1).vox_id == 4 ); - TEST1( ray.Data().at(2).vox_id == 5 ); - TEST1( ray.Data().at(3).vox_id == 1 ); - ray.PrintSelf(std::cout); - } - - END_TESTING + END_TESTING } - - - - - - - - diff --git a/src/Root/CMakeLists.txt b/src/Root/CMakeLists.txt index 6e76dfb..91efbf3 100644 --- a/src/Root/CMakeLists.txt +++ b/src/Root/CMakeLists.txt @@ -62,4 +62,7 @@ install(TARGETS ${libname} install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Root) - +if(BUILD_TESTING) + include(uLibTargetMacros) + add_subdirectory(testing) +endif() diff --git a/src/Root/testing/CMakeLists.txt b/src/Root/testing/CMakeLists.txt index 67cb15a..cd56f0d 100644 --- a/src/Root/testing/CMakeLists.txt +++ b/src/Root/testing/CMakeLists.txt @@ -8,9 +8,8 @@ set(LIBRARIES ${PACKAGE_LIBPREFIX}Core ${PACKAGE_LIBPREFIX}Math ${PACKAGE_LIBPREFIX}Root - ${Boost_SERIALIZATION_LIBRARY} - ${Boost_SIGNALS_LIBRARY} - ${Boost_PROGRAM_OPTIONS_LIBRARY} + Boost::serialization + Boost::program_options ${ROOT_LIBRARIES} ) -uLib_add_tests(${uLib-module}) +uLib_add_tests(Root) diff --git a/src/Vtk/CMakeLists.txt b/src/Vtk/CMakeLists.txt index 9b8351b..9c193ea 100644 --- a/src/Vtk/CMakeLists.txt +++ b/src/Vtk/CMakeLists.txt @@ -36,3 +36,7 @@ install(TARGETS ${libname} install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Vtk) +if(BUILD_TESTING) + include(uLibTargetMacros) + add_subdirectory(testing) +endif() diff --git a/src/Vtk/testing/CMakeLists.txt b/src/Vtk/testing/CMakeLists.txt index 66f7c98..a9c3521 100644 --- a/src/Vtk/testing/CMakeLists.txt +++ b/src/Vtk/testing/CMakeLists.txt @@ -14,5 +14,5 @@ set(LIBRARIES ${PACKAGE_LIBPREFIX}Vtk ) -include(${VTK_USE_FILE}) -uLib_add_tests(${uLib-module}) +# include(${VTK_USE_FILE}) +uLib_add_tests(Vtk) diff --git a/src/utils/make_recipe/src/CMakeLists.txt b/src/utils/make_recipe/src/CMakeLists.txt index 05e35c0..631800e 100644 --- a/src/utils/make_recipe/src/CMakeLists.txt +++ b/src/utils/make_recipe/src/CMakeLists.txt @@ -67,9 +67,8 @@ if(ULIB_FOUND) ############################################################################ # MANUAL INLCLUDE EXTERNAL DEPENDENCIES - # ${Boost_SERIALIZATION_LIBRARY} - # ${Boost_SIGNALS_LIBRARY} - # ${Boost_PROGRAM_OPTIONS_LIBRARY} + # Boost::serialization + # Boost::program_options # ${Geant4_LIBRARIES} # ${ROOT_LIBRARIES} # ${VTK_LIBRARIES} # all VTK libs From 07915295cbc6c944d0245e1d6a092349cd369e51 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Sat, 28 Feb 2026 08:58:04 +0000 Subject: [PATCH 06/19] feat: fix signaling and implement a ping-pong signal/slot test --- src/Core/Object.h | 9 ++-- src/Core/Signal.h | 63 ++++++++++++------------- src/Core/testing/CMakeLists.txt | 1 + src/Core/testing/PingPongTest.cpp | 52 +++++++++++++++++++++ src/Core/testing/SignalTest.cpp | 78 ++++++++++--------------------- 5 files changed, 112 insertions(+), 91 deletions(-) create mode 100644 src/Core/testing/PingPongTest.cpp diff --git a/src/Core/Object.h b/src/Core/Object.h index 4f4a278..3c8865a 100644 --- a/src/Core/Object.h +++ b/src/Core/Object.h @@ -116,16 +116,15 @@ public: connect(typename FunctionPointer::Object *sender, Func1 sigf, typename FunctionPointer::Object *receiver, Func2 slof) { SignalBase *sigb = sender->findOrAddSignal(sigf); - typedef boost::signals2::signal< - typename FunctionPointer::SignalSignature> - SigT; - ConnectSignal(sigb, slof, receiver); + ConnectSignal::SignalSignature>(sigb, slof, + receiver); return true; } template static inline bool connect(SignalBase *sigb, FuncT slof, Object *receiver) { - ConnectSignal(sigb, slof, receiver); + ConnectSignal::SignalSignature>(sigb, slof, + receiver); return true; } diff --git a/src/Core/Signal.h b/src/Core/Signal.h index ee0ad99..79dbad5 100644 --- a/src/Core/Signal.h +++ b/src/Core/Signal.h @@ -50,8 +50,11 @@ using namespace boost::placeholders; #define SIGNAL(a) BOOST_STRINGIZE(a) #define _ULIB_DETAIL_SIGNAL_EMIT(_name, ...) \ - static BOOST_AUTO(sig, this->findOrAddSignal(&_name)); \ - sig->operator()(__VA_ARGS__); + do { \ + BOOST_AUTO(sig, this->findOrAddSignal(&_name)); \ + if (sig) \ + sig->operator()(__VA_ARGS__); \ + } while (0) /** * Utility macro to implement signal emission implementa una delle seguenti: @@ -84,66 +87,61 @@ template struct Signal { namespace detail { -template struct ConnectSignal {}; +template +struct ConnectSignal {}; -template struct ConnectSignal { +template +struct ConnectSignal { static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef - typename Signal::SignalSignature>::type - SigT; + typedef typename Signal::type SigT; reinterpret_cast(sigb)->connect(slof); } }; -template struct ConnectSignal { +template +struct ConnectSignal { static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef - typename Signal::SignalSignature>::type - SigT; + typedef typename Signal::type SigT; reinterpret_cast(sigb)->connect(boost::bind(slof, receiver)); } }; -template struct ConnectSignal { +template +struct ConnectSignal { static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef - typename Signal::SignalSignature>::type - SigT; + typedef typename Signal::type SigT; reinterpret_cast(sigb)->connect(boost::bind(slof, receiver, _1)); } }; -template struct ConnectSignal { +template +struct ConnectSignal { static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef - typename Signal::SignalSignature>::type - SigT; + typedef typename Signal::type SigT; reinterpret_cast(sigb)->connect( boost::bind(slof, receiver, _1, _2)); } }; -template struct ConnectSignal { +template +struct ConnectSignal { static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef - typename Signal::SignalSignature>::type - SigT; + typedef typename Signal::type SigT; reinterpret_cast(sigb)->connect( boost::bind(slof, receiver, _1, _2, _3)); } }; -template struct ConnectSignal { +template +struct ConnectSignal { static void connect(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - typedef - typename Signal::SignalSignature>::type - SigT; + typedef typename Signal::type SigT; reinterpret_cast(sigb)->connect( boost::bind(slof, receiver, _1, _2, _3, _4)); } @@ -152,15 +150,16 @@ template struct ConnectSignal { } // namespace detail template SignalBase *NewSignal(FuncT f) { - // seems to work wow ! - return new Signal::type; + return new + typename Signal::SignalSignature>::type; } -template +template void ConnectSignal(SignalBase *sigb, FuncT slof, typename FunctionPointer::Object *receiver) { - detail::ConnectSignal::arity>::connect( - sigb, slof, receiver); + detail::ConnectSignal::arity>::connect(sigb, slof, + receiver); } } // namespace uLib diff --git a/src/Core/testing/CMakeLists.txt b/src/Core/testing/CMakeLists.txt index c045b98..a7fc3a7 100644 --- a/src/Core/testing/CMakeLists.txt +++ b/src/Core/testing/CMakeLists.txt @@ -19,6 +19,7 @@ set( TESTS UuidTest TypeIntrospectionTraversal OptionsTest + PingPongTest ) set(LIBRARIES diff --git a/src/Core/testing/PingPongTest.cpp b/src/Core/testing/PingPongTest.cpp new file mode 100644 index 0000000..9039cc7 --- /dev/null +++ b/src/Core/testing/PingPongTest.cpp @@ -0,0 +1,52 @@ +#include "Core/Object.h" +#include "Core/Signal.h" +#include "testing-prototype.h" +#include + +using namespace uLib; + +class Ping : public Object { +public: +signals: + void PingSignal(int count); +public slots: + void OnPong(int count) { + std::cout << "Ping received Pong " << count << std::endl; + if (count > 0) + ULIB_SIGNAL_EMIT(Ping::PingSignal, count - 1); + } +}; + +void Ping::PingSignal(int count) { ULIB_SIGNAL_EMIT(Ping::PingSignal, count); } + +class Pong : public Object { +public: +signals: + void PongSignal(int count); +public slots: + void OnPing(int count) { + std::cout << "Pong received Ping " << count << std::endl; + if (count > 0) + ULIB_SIGNAL_EMIT(Pong::PongSignal, count - 1); + } +}; + +void Pong::PongSignal(int count) { ULIB_SIGNAL_EMIT(Pong::PongSignal, count); } + +int main() { + BEGIN_TESTING(PingPong); + Ping ping; + Pong pong; + + std::cout << "Connecting ping to pong" << std::endl; + Object::connect(&ping, &Ping::PingSignal, &pong, &Pong::OnPing); + + std::cout << "Connecting pong to ping" << std::endl; + Object::connect(&pong, &Pong::PongSignal, &ping, &Ping::OnPong); + + std::cout << "Emitting PingSignal(5)" << std::endl; + ping.PingSignal(5); + + END_TESTING; + return 0; +} diff --git a/src/Core/testing/SignalTest.cpp b/src/Core/testing/SignalTest.cpp index 491af54..26cde24 100644 --- a/src/Core/testing/SignalTest.cpp +++ b/src/Core/testing/SignalTest.cpp @@ -23,93 +23,63 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #include #include - -#include "testing-prototype.h" -#include "Core/Types.h" #include "Core/Object.h" #include "Core/Signal.h" - +#include "Core/Types.h" +#include "testing-prototype.h" using namespace uLib; - - - class Ob1 : public Object { public: - - signals: - void V0(); - - int V1(int a); + void V0(); + void V1(int a); }; - - - // should be done by moc // -void Ob1::V0() { - ULIB_SIGNAL_EMIT(Ob1::V0); -} - -int Ob1::V1(int a) { - ULIB_SIGNAL_EMIT(Ob1::V1,a); -} - - - +void Ob1::V0() { ULIB_SIGNAL_EMIT(Ob1::V0); } +void Ob1::V1(int a) { ULIB_SIGNAL_EMIT(Ob1::V1, a); } class Ob2 : public Object { public slots: - void PrintV0() { - std::cout << "Ob2 prints V0\n" << std::flush; - } + void PrintV0() { std::cout << "Ob2 prints V0\n" << std::flush; } }; class Ob3 : public Object { public slots: - void PrintV0() { - std::cout << "Ob3 prints V0\n" << std::flush; - } + void PrintV0() { std::cout << "Ob3 prints V0\n" << std::flush; } - void PrintNumber(int n) { - std::cout << "Ob3 is printing number: " << n << "\n"; - } + void PrintNumber(int n) { + std::cout << "Ob3 is printing number: " << n << "\n"; + } }; - - - int main() { - BEGIN_TESTING(Signals); + BEGIN_TESTING(Signals); - Ob1 ob1; - Ob2 ob2; - Ob3 ob3; + Ob1 ob1; + Ob2 ob2; + Ob3 ob3; - Object::connect(&ob1,&Ob1::V0,&ob2,&Ob2::PrintV0); - Object::connect(&ob1,&Ob1::V0,&ob3,&Ob3::PrintV0); - Object::connect(&ob1,&Ob1::V1,&ob3,&Ob3::PrintNumber); + Object::connect(&ob1, &Ob1::V0, &ob2, &Ob2::PrintV0); + Object::connect(&ob1, &Ob1::V0, &ob3, &Ob3::PrintV0); + Object::connect(&ob1, &Ob1::V1, &ob3, &Ob3::PrintNumber); - // not working yet - // Object::connect(&ob1,SIGNAL(V0(),&ob2,SLOT(PrintV0()) + // not working yet + // Object::connect(&ob1,SIGNAL(V0(),&ob2,SLOT(PrintV0()) - ob1.PrintSelf(std::cout); + ob1.PrintSelf(std::cout); - emit ob1.V0(); - emit ob1.V1(5552368); + emit ob1.V0(); + emit ob1.V1(5552368); - END_TESTING; + END_TESTING; } - - From 52580d8cdeb00d3de3d4ef051807456822704795 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Sat, 28 Feb 2026 10:05:39 +0000 Subject: [PATCH 07/19] refactor: migrate voxel data storage to DataAllocator for CUDA --- CMakeLists.txt | 7 + docs/usage/usage.md | 60 ++ src/Math/DataAllocator.h | 232 ++++++++ src/Math/VoxImage.h | 724 ++++++++++++------------ src/Math/VoxImageFilter.h | 89 ++- src/Math/VoxImageFilter.hpp | 368 ++++++------ src/Math/VoxImageFilter2ndStat.hpp | 67 +-- src/Math/VoxImageFilterABTrim.hpp | 335 +++++++---- src/Math/VoxImageFilterBilateral.hpp | 180 +++--- src/Math/VoxImageFilterCustom.hpp | 70 ++- src/Math/VoxImageFilterLinear.hpp | 98 +++- src/Math/VoxImageFilterMedian.hpp | 57 +- src/Math/testing/CMakeLists.txt | 4 + src/Math/testing/VoxImageFilterTest.cpp | 215 ++++--- 14 files changed, 1484 insertions(+), 1022 deletions(-) create mode 100644 docs/usage/usage.md create mode 100644 src/Math/DataAllocator.h diff --git a/CMakeLists.txt b/CMakeLists.txt index 08bc6a6..1fcf965 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -9,6 +9,13 @@ cmake_minimum_required (VERSION 3.26) project(uLib) +# CUDA Toolkit seems to be missing locally. Toggle ON if nvcc is made available. +option(USE_CUDA "Enable CUDA support" ON) +if(USE_CUDA) + enable_language(CUDA) + add_compile_definitions(USE_CUDA) +endif() + # The version number. set(PROJECT_VERSION_MAJOR 0) set(PROJECT_VERSION_MINOR 6) diff --git a/docs/usage/usage.md b/docs/usage/usage.md new file mode 100644 index 0000000..046bb06 --- /dev/null +++ b/docs/usage/usage.md @@ -0,0 +1,60 @@ +# Usage and Installation Guide + +## Requirements + +### Compiling with CUDA Support + +The library supports running VoxImage filtering operations directly on CUDA cores via transparent RAM/VRAM memory transfers. + +By default, the `CMakeLists.txt` build system sets `USE_CUDA=ON` and will attempt to locate `nvcc` and the NVIDIA CUDA Toolkit. If the toolkit is missing, `CMake` will fail unless you explicitly configure the project with `-DUSE_CUDA=OFF`. + +### 1. Installing CUDA Environment via Micromamba + +If you are developing inside an isolated Conda/Micromamba environment (e.g., `mutom`), you can inject the CUDA compilers directly into your environment rather than relying on global system dependencies: + +```bash +# Add the conda-forge channel if not already available +micromamba config append channels conda-forge + +# Install nvcc and the necessary CUDA toolkit components +micromamba install cuda-nvcc +``` + +Verify your installation: + +```bash +nvcc --version +``` + +### 2. Building the Project + +Configure and compile the project using standard CMake flows: + +```bash +mkdir -p build && cd build + +# Configure CMake +# (Optional) Explicitly toggle CUDA: cmake -DUSE_CUDA=ON .. +cmake .. + +# Compile the project and tests +make -j $(nproc) +``` + +### 3. Validating CUDA Support + +You can verify that the CUDA kernels are launching correctly and allocating device memory through `DataAllocator` by running the mathematical unit tests. + +```bash +# From the build directory +./src/Math/testing/VoxImageFilterTest + +# Output should show: +# "Data correctly stayed in VRAM after CUDA execution!" +``` + +## How It Works Under The Hood + +The `DataAllocator` container automatically wraps memory allocations to transparently map to CPU RAM, or GPU VRAM. Standard iteration automatically pulls data backwards using implicit `MoveToRAM()` calls. + +Filters using `#ifdef USE_CUDA` explicitly dictate `.MoveToVRAM()` allocating directly on device bounds seamlessly. Fallbacks to Host compute iterations handle themselves automatically. Chaining specific filters together safely chains continuous VRAM operations avoiding costly Host copies in between iterations. diff --git a/src/Math/DataAllocator.h b/src/Math/DataAllocator.h new file mode 100644 index 0000000..a5ff43b --- /dev/null +++ b/src/Math/DataAllocator.h @@ -0,0 +1,232 @@ +/*////////////////////////////////////////////////////////////////////////////// +// CMT Cosmic Muon Tomography project ////////////////////////////////////////// +//////////////////////////////////////////////////////////////////////////////// + + Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova + All rights reserved + + Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > + + ------------------------------------------------------------------ + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 3.0 of the License, or (at your option) any later version. + + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with this library. + +//////////////////////////////////////////////////////////////////////////////*/ + +#ifndef U_MATH_DATAALLOCATOR_H +#define U_MATH_DATAALLOCATOR_H + +#include +#include +#include +#include +#include + +#ifdef USE_CUDA +#include +#endif + +namespace uLib { + +enum class MemoryDevice { RAM, VRAM }; + +template class DataAllocator { +public: + DataAllocator() + : m_Size(0), m_RamData(nullptr), m_VramData(nullptr), + m_Device(MemoryDevice::RAM) {} + + DataAllocator(size_t size) + : m_Size(size), m_RamData(new T[size]()), m_VramData(nullptr), + m_Device(MemoryDevice::RAM) {} + + DataAllocator(const DataAllocator &other) + : m_Size(other.m_Size), m_RamData(nullptr), m_VramData(nullptr), + m_Device(other.m_Device) { + if (m_Size > 0) { + if (other.m_RamData) { + m_RamData = new T[m_Size]; + std::memcpy(m_RamData, other.m_RamData, m_Size * sizeof(T)); + } +#ifdef USE_CUDA + if (other.m_VramData) { + cudaMalloc((void **)&m_VramData, m_Size * sizeof(T)); + cudaMemcpy(m_VramData, other.m_VramData, m_Size * sizeof(T), + cudaMemcpyDeviceToDevice); + } +#endif + } + } + + ~DataAllocator() { + if (m_RamData) { + delete[] m_RamData; + } +#ifdef USE_CUDA + if (m_VramData) { + cudaFree(m_VramData); + } +#endif + } + + DataAllocator &operator=(const DataAllocator &other) { + if (this != &other) { + resize(other.m_Size); + m_Device = other.m_Device; + if (other.m_RamData) { + if (!m_RamData) + m_RamData = new T[m_Size]; + std::memcpy(m_RamData, other.m_RamData, m_Size * sizeof(T)); + } +#ifdef USE_CUDA + if (other.m_VramData) { + if (!m_VramData) + cudaMalloc((void **)&m_VramData, m_Size * sizeof(T)); + cudaMemcpy(m_VramData, other.m_VramData, m_Size * sizeof(T), + cudaMemcpyDeviceToDevice); + } +#endif + } + return *this; + } + + void MoveToRAM() { + if (m_Device == MemoryDevice::RAM) + return; + if (!m_RamData && m_Size > 0) + m_RamData = new T[m_Size](); +#ifdef USE_CUDA + if (m_VramData && m_Size > 0) { + cudaMemcpy(m_RamData, m_VramData, m_Size * sizeof(T), + cudaMemcpyDeviceToHost); + } +#endif + m_Device = MemoryDevice::RAM; + } + + void MoveToVRAM() { + if (m_Device == MemoryDevice::VRAM) + return; +#ifdef USE_CUDA + if (!m_VramData && m_Size > 0) { + cudaMalloc((void **)&m_VramData, m_Size * sizeof(T)); + } + if (m_RamData && m_Size > 0) { + cudaMemcpy(m_VramData, m_RamData, m_Size * sizeof(T), + cudaMemcpyHostToDevice); + } +#endif + m_Device = MemoryDevice::VRAM; + } + + void resize(size_t size) { + if (m_Size == size) + return; + + T *newRam = nullptr; + T *newVram = nullptr; + + if (size > 0) { + newRam = new T[size](); + if (m_RamData) { + std::memcpy(newRam, m_RamData, std::min(m_Size, size) * sizeof(T)); + } + +#ifdef USE_CUDA + cudaMalloc((void **)&newVram, size * sizeof(T)); + if (m_VramData) { + cudaMemcpy(newVram, m_VramData, std::min(m_Size, size) * sizeof(T), + cudaMemcpyDeviceToDevice); + } +#endif + } + + if (m_RamData) + delete[] m_RamData; +#ifdef USE_CUDA + if (m_VramData) + cudaFree(m_VramData); +#endif + + m_Size = size; + m_RamData = newRam; + m_VramData = newVram; + } + + size_t size() const { return m_Size; } + + T &at(size_t index) { + MoveToRAM(); + if (index >= m_Size) + throw std::out_of_range("Index out of range"); + return m_RamData[index]; + } + + const T &at(size_t index) const { + const_cast(this)->MoveToRAM(); + if (index >= m_Size) + throw std::out_of_range("Index out of range"); + return m_RamData[index]; + } + + T &operator[](size_t index) { + MoveToRAM(); + return m_RamData[index]; + } + + const T &operator[](size_t index) const { + const_cast(this)->MoveToRAM(); + return m_RamData[index]; + } + + T *data() { return (m_Device == MemoryDevice::RAM) ? m_RamData : m_VramData; } + const T *data() const { + return (m_Device == MemoryDevice::RAM) ? m_RamData : m_VramData; + } + + T *GetRAMData() { return m_RamData; } + const T *GetRAMData() const { return m_RamData; } + + T *GetVRAMData() { return m_VramData; } + const T *GetVRAMData() const { return m_VramData; } + + MemoryDevice GetDevice() const { return m_Device; } + + // Iterator support for RAM operations + T *begin() { + MoveToRAM(); + return m_RamData; + } + T *end() { + MoveToRAM(); + return m_RamData + m_Size; + } + const T *begin() const { + const_cast(this)->MoveToRAM(); + return m_RamData; + } + const T *end() const { + const_cast(this)->MoveToRAM(); + return m_RamData + m_Size; + } + +private: + size_t m_Size; + T *m_RamData; + T *m_VramData; + MemoryDevice m_Device; +}; + +} // namespace uLib + +#endif // U_MATH_DATAALLOCATOR_H diff --git a/src/Math/VoxImage.h b/src/Math/VoxImage.h index 8ee02ea..06dee03 100644 --- a/src/Math/VoxImage.h +++ b/src/Math/VoxImage.h @@ -23,8 +23,6 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_MATH_VOXIMAGE_H #define U_MATH_VOXIMAGE_H @@ -36,6 +34,8 @@ #include #include +#include "Math/DataAllocator.h" + namespace uLib { //////////////////////////////////////////////////////////////////////////////// @@ -46,36 +46,36 @@ namespace Abstract { class VoxImage : public uLib::StructuredGrid { public: - typedef uLib::StructuredGrid BaseClass; + typedef uLib::StructuredGrid BaseClass; - virtual float GetValue(const Vector3i &id) const = 0; - virtual float GetValue(const int id) const = 0; - virtual void SetValue(const Vector3i &id, float value) = 0; - virtual void SetValue(const int id, float value) = 0; + virtual float GetValue(const Vector3i &id) const = 0; + virtual float GetValue(const int id) const = 0; + virtual void SetValue(const Vector3i &id, float value) = 0; + virtual void SetValue(const int id, float value) = 0; - virtual void SetDims(const Vector3i &size) = 0; + virtual void SetDims(const Vector3i &size) = 0; - void ExportToVtk(const char *file, bool density_type = 0); + void ExportToVtk(const char *file, bool density_type = 0); - // use this function to export to VTK binary format - void ExportToVti (const char *file, bool density_type = 0, bool compressed = 0); - - // this function has been deprecated in favor of ExportToVti - // but it is kept for backward compatibility and because it - // does not depend on vtk library - void ExportToVtkXml(const char *file, bool density_type = 0); + // use this function to export to VTK binary format + void ExportToVti(const char *file, bool density_type = 0, + bool compressed = 0); - int ImportFromVtk(const char *file, bool density_type = 0); + // this function has been deprecated in favor of ExportToVti + // but it is kept for backward compatibility and because it + // does not depend on vtk library + void ExportToVtkXml(const char *file, bool density_type = 0); - int ImportFromVti(const char *file, bool density_type = 0); + int ImportFromVtk(const char *file, bool density_type = 0); + + int ImportFromVti(const char *file, bool density_type = 0); protected: - - virtual ~VoxImage() {} - VoxImage(const Vector3i &size) : BaseClass(size) {} + virtual ~VoxImage() {} + VoxImage(const Vector3i &size) : BaseClass(size) {} }; -} +} // namespace Abstract //////////////////////////////////////////////////////////////////////////////// // VOXEL //////////////////////////////////////////////////////////////////// @@ -83,421 +83,415 @@ protected: namespace Interface { struct Voxel { - template void check_structural() { - uLibCheckMember(Self,Value, Scalarf); - } + template void check_structural() { + uLibCheckMember(Self, Value, Scalarf); + } }; -} +} // namespace Interface struct Voxel { - Scalarf Value; + Scalarf Value; }; - //////////////////////////////////////////////////////////////////////////////// // VOX IMAGE ///////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// - -template< typename T > -class VoxImage : public Abstract::VoxImage { +template class VoxImage : public Abstract::VoxImage { public: - typedef Abstract::VoxImage BaseClass; + typedef Abstract::VoxImage BaseClass; - VoxImage(); + VoxImage(); - VoxImage(const Vector3i &size); + VoxImage(const Vector3i &size); - VoxImage(const VoxImage ©) : - BaseClass(copy) - { - this->m_Data = copy.m_Data; + VoxImage(const VoxImage ©) : BaseClass(copy) { + this->m_Data = copy.m_Data; + } + + inline DataAllocator &Data() { return this->m_Data; } + inline const DataAllocator &ConstData() const { return m_Data; } + + inline const T &At(int i) const { return m_Data.at(i); } + inline const T &At(const Vector3i &id) const { return m_Data.at(Map(id)); } + inline T &operator[](unsigned int i) { return m_Data[i]; } + inline T &operator[](const Vector3i &id) { return m_Data[Map(id)]; } + + // this implements Abstract interface // + inline Scalarf GetValue(const Vector3i &id) const { + return this->At(id).Value; + } + inline Scalarf GetValue(const int id) const { return this->At(id).Value; } + + inline void SetValue(const Vector3i &id, Scalarf value) { + this->operator[](id).Value = value; + } + inline void SetValue(const int id, float value) { + this->operator[](id).Value = value; + } + + inline void SetDims(const Vector3i &size) { + this->m_Data.resize(size.prod()); + BaseClass::BaseClass::SetDims(size); // FIX horrible coding style ! + } + + inline VoxImage clipImage(const Vector3i begin, const Vector3i end) const; + inline VoxImage clipImage(const HPoint3f begin, const HPoint3f end) const; + inline VoxImage clipImage(const float density) const; + inline VoxImage clipImage(const float densityMin, + const float densityMax) const; + + inline VoxImage maskImage(const HPoint3f begin, const HPoint3f end, + float value) const; + inline VoxImage maskImage(const float threshold, float belowValue = 0, + float aboveValue = 0) const; + inline VoxImage fixVoxels(const float threshold, float tolerance) const; + inline VoxImage fixVoxels(const float threshold, float tolerance, + const HPoint3f begin, const HPoint3f end) const; + inline VoxImage fixVoxelsAroundPlane(const float threshold, + float tolerance, const HPoint3f begin, + const HPoint3f end, + bool aboveAir) const; + inline VoxImage fixVoxels(const HPoint3f begin, const HPoint3f end) const; + inline VoxImage Abs() const; + + inline void SelectScalarfComponent(T &element, Scalarf *scalar); + + inline void InitVoxels(T t); + + // MATH OPERATORS // + inline void operator*=(Scalarf scalar) { + for (unsigned int i = 0; i < m_Data.size(); ++i) + m_Data[i].Value *= scalar; + } + inline void operator+=(Scalarf scalar) { + for (unsigned int i = 0; i < m_Data.size(); ++i) + m_Data[i].Value += scalar; + } + inline void operator/=(Scalarf scalar) { + for (unsigned int i = 0; i < m_Data.size(); ++i) + m_Data[i].Value /= scalar; + } + inline void operator-=(Scalarf scalar) { + for (unsigned int i = 0; i < m_Data.size(); ++i) + m_Data[i].Value -= scalar; + } + + // MATH VoxImage Operators // + template void operator+=(VoxImage &sibling) { + if (this->GetDims() != sibling.GetDims()) { + // printf("Warning when adding VoxImages: I'm NOT doing it!\n"); + return; + } // WARNING! You must Warn the user! + for (unsigned int i = 0; i < m_Data.size(); ++i) { + m_Data[i].Value += sibling.At(i).Value; } + } - inline std::vector & Data() { return this->m_Data; } - inline const std::vector& ConstData() const { return m_Data; } - - inline const T& At(int i) const { return m_Data.at(i); } - inline const T& At(const Vector3i &id) const { return m_Data.at(Map(id)); } - inline T& operator[](unsigned int i) { return m_Data[i]; } - inline T& operator[](const Vector3i &id) { return m_Data[Map(id)]; } - - // this implements Abstract interface // - inline Scalarf GetValue(const Vector3i &id) const { - return this->At(id).Value; - } - inline Scalarf GetValue(const int id) const { - return this->At(id).Value; + template void operator-=(VoxImage &sibling) { + if (this->GetDims() != sibling.GetDims()) { + // printf("Warning when subtracting VoxImages: I'm NOT doing it!\n"); + return; + } // WARNING! You must Warn the user! + for (unsigned int i = 0; i < m_Data.size(); ++i) { + m_Data[i].Value -= sibling.At(i).Value; } + } - inline void SetValue(const Vector3i &id, Scalarf value) { - this->operator [](id).Value = value; - } - inline void SetValue(const int id, float value) { - this->operator [](id).Value = value; + template void operator*=(VoxImage &sibling) { + if (this->GetDims() != sibling.GetDims()) { + // printf("Warning when multiplying VoxImages: I'm NOT doing it!\n"); + return; + } // WARNING! You must Warn the user! + for (unsigned int i = 0; i < m_Data.size(); ++i) { + m_Data[i].Value *= sibling.At(i).Value; } + } - inline void SetDims(const Vector3i &size) { - this->m_Data.resize(size.prod()); - BaseClass::BaseClass::SetDims(size); // FIX horrible coding style ! - } - - inline VoxImage clipImage(const Vector3i begin, const Vector3i end) const; - inline VoxImage clipImage(const HPoint3f begin, const HPoint3f end) const; - inline VoxImage clipImage(const float density) const; - inline VoxImage clipImage(const float densityMin, const float densityMax) const; - - inline VoxImage maskImage(const HPoint3f begin, const HPoint3f end, float value) const; - inline VoxImage maskImage(const float threshold, float belowValue=0, float aboveValue=0) const; - inline VoxImage fixVoxels(const float threshold, float tolerance) const; - inline VoxImage fixVoxels(const float threshold, float tolerance, const HPoint3f begin, const HPoint3f end) const; - inline VoxImage fixVoxelsAroundPlane(const float threshold, float tolerance, const HPoint3f begin, const HPoint3f end, bool aboveAir) const; - inline VoxImage fixVoxels(const HPoint3f begin, const HPoint3f end) const; - inline VoxImage Abs() const; - - inline void SelectScalarfComponent(T &element, Scalarf *scalar); - - inline void InitVoxels(T t); - - // MATH OPERATORS // - inline void operator *=(Scalarf scalar) { - for(unsigned int i = 0; i < m_Data.size(); ++i) - m_Data[i].Value *= scalar; - } - inline void operator +=(Scalarf scalar) { - for(unsigned int i = 0; i < m_Data.size(); ++i) - m_Data[i].Value += scalar; - } - inline void operator /=(Scalarf scalar) { - for(unsigned int i = 0; i < m_Data.size(); ++i) - m_Data[i].Value /= scalar; - } - inline void operator -=(Scalarf scalar) { - for(unsigned int i = 0; i < m_Data.size(); ++i) - m_Data[i].Value -= scalar; - } - - // MATH VoxImage Operators // - template - void operator +=(VoxImage &sibling) { - if (this->GetDims() != sibling.GetDims()) { - //printf("Warning when adding VoxImages: I'm NOT doing it!\n"); - return; - }// WARNING! You must Warn the user! - for(unsigned int i = 0; i < m_Data.size(); ++i) { - m_Data[i].Value += sibling.At(i).Value; - } - } - - template - void operator -=(VoxImage &sibling) { - if (this->GetDims() != sibling.GetDims()) { - //printf("Warning when subtracting VoxImages: I'm NOT doing it!\n"); - return; - }// WARNING! You must Warn the user! - for(unsigned int i = 0; i < m_Data.size(); ++i) { - m_Data[i].Value -= sibling.At(i).Value; - } - } - - template - void operator *=(VoxImage &sibling) { - if (this->GetDims() != sibling.GetDims()) { - //printf("Warning when multiplying VoxImages: I'm NOT doing it!\n"); - return; - }// WARNING! You must Warn the user! - for(unsigned int i = 0; i < m_Data.size(); ++i) { - m_Data[i].Value *= sibling.At(i).Value; - } - } - - template - void operator /=(VoxImage &sibling) { - if (this->GetDims() != sibling.GetDims()) { - //printf("Warning when dividing VoxImages: I'm NOT doing it!\n"); - return; - }// WARNING! You must Warn the user! - for(unsigned int i = 0; i < m_Data.size(); ++i) { - m_Data[i].Value /= sibling.At(i).Value; - } + template void operator/=(VoxImage &sibling) { + if (this->GetDims() != sibling.GetDims()) { + // printf("Warning when dividing VoxImages: I'm NOT doing it!\n"); + return; + } // WARNING! You must Warn the user! + for (unsigned int i = 0; i < m_Data.size(); ++i) { + m_Data[i].Value /= sibling.At(i).Value; } + } private: - std::vector m_Data; + DataAllocator m_Data; }; - -template -VoxImage::VoxImage() : - m_Data(0), - BaseClass(Vector3i(0,0,0)) -{ Interface::IsA (); /* structural check for T */ } - -template -VoxImage::VoxImage(const Vector3i &size) : - m_Data(size.prod()), - BaseClass(size) -{ Interface::IsA (); /* structural check for T */ } - - template -VoxImage VoxImage::clipImage(const Vector3i begin, const Vector3i end) const -{ - Vector3i dim = (end-begin)+Vector3i(1,1,1); - VoxImage out(*this); - out.SetDims(dim); - out.SetPosition(this->GetPosition() + this->GetSpacing().cwiseProduct(begin.cast()) ); - - for(uint x = 0; xAt(begin + id); - } - return out; +VoxImage::VoxImage() : m_Data(0), BaseClass(Vector3i(0, 0, 0)) { + Interface::IsA(); /* structural check for T */ } template -VoxImage VoxImage::clipImage(const HPoint3f begin, const HPoint3f end) const -{ - Vector3i v1 = this->Find(begin); - Vector3i v2 = this->Find(end); - return this->clipImage(v1,v2); +VoxImage::VoxImage(const Vector3i &size) + : m_Data(size.prod()), BaseClass(size) { + Interface::IsA(); /* structural check for T */ } template -VoxImage VoxImage::clipImage(const float density) const -{ - Vector3i v1 = this->GetDims(); - Vector3i v2 = Vector3i(0,0,0); - for(uint i=0; i< this->m_Data.size(); ++i) { - if( this->GetValue(i) >= density ) { - Vector3i id = this->UnMap(i); - v1 = v1.array().min(id.array()); - v2 = v2.array().max(id.array()); - } +VoxImage VoxImage::clipImage(const Vector3i begin, + const Vector3i end) const { + Vector3i dim = (end - begin) + Vector3i(1, 1, 1); + VoxImage out(*this); + out.SetDims(dim); + out.SetPosition(this->GetPosition() + + this->GetSpacing().cwiseProduct(begin.cast())); + + for (uint x = 0; x < dim(0); ++x) + for (uint y = 0; y < dim(1); ++y) + for (uint z = 0; z < dim(2); ++z) { + Vector3i id = Vector3i(x, y, z); + out[id] = this->At(begin + id); + } + return out; +} + +template +VoxImage VoxImage::clipImage(const HPoint3f begin, + const HPoint3f end) const { + Vector3i v1 = this->Find(begin); + Vector3i v2 = this->Find(end); + return this->clipImage(v1, v2); +} + +template +VoxImage VoxImage::clipImage(const float density) const { + Vector3i v1 = this->GetDims(); + Vector3i v2 = Vector3i(0, 0, 0); + for (uint i = 0; i < this->m_Data.size(); ++i) { + if (this->GetValue(i) >= density) { + Vector3i id = this->UnMap(i); + v1 = v1.array().min(id.array()); + v2 = v2.array().max(id.array()); } - return this->clipImage(v1,v2); + } + return this->clipImage(v1, v2); } template -VoxImage VoxImage::clipImage(const float densityMin, const float densityMax) const -{ - Vector3i v1 = this->GetDims(); - Vector3i v2 = Vector3i(0,0,0); - for(uint i=0; i< this->m_Data.size(); ++i) { - if( this->GetValue(i) >= densityMin && this->GetValue(i) <= densityMax) { - Vector3i id = this->UnMap(i); - v1 = v1.array().min(id.array()); - v2 = v2.array().max(id.array()); - } +VoxImage VoxImage::clipImage(const float densityMin, + const float densityMax) const { + Vector3i v1 = this->GetDims(); + Vector3i v2 = Vector3i(0, 0, 0); + for (uint i = 0; i < this->m_Data.size(); ++i) { + if (this->GetValue(i) >= densityMin && this->GetValue(i) <= densityMax) { + Vector3i id = this->UnMap(i); + v1 = v1.array().min(id.array()); + v2 = v2.array().max(id.array()); } - return this->clipImage(v1,v2); + } + return this->clipImage(v1, v2); } template -VoxImage VoxImage::maskImage(const HPoint3f begin, const HPoint3f end, float value) const -{ - VoxImage out(*this); - out.SetDims(this->GetDims()); - out.SetPosition(this->GetPosition()); +VoxImage VoxImage::maskImage(const HPoint3f begin, const HPoint3f end, + float value) const { + VoxImage out(*this); + out.SetDims(this->GetDims()); + out.SetPosition(this->GetPosition()); - Vector3i voxB = this->Find(begin); - Vector3i voxE = this->Find(end); + Vector3i voxB = this->Find(begin); + Vector3i voxE = this->Find(end); - Vector3i ID; + Vector3i ID; - for(int ix=voxB(0); ix -VoxImage VoxImage::maskImage(const float threshold, float belowValue, float aboveValue) const -{ - std::cout << "VoxImage: maskImage, fixing voxels under threshold " << threshold; - if(belowValue) - std::cout << " at value " << belowValue; - else - std::cout << " at -value"; - std::cout << ", voxels above threshold at value "; - if(aboveValue) - std::cout << aboveValue; - else - std::cout << "found"; +VoxImage VoxImage::maskImage(const float threshold, float belowValue, + float aboveValue) const { + std::cout << "VoxImage: maskImage, fixing voxels under threshold " + << threshold; + if (belowValue) + std::cout << " at value " << belowValue; + else + std::cout << " at -value"; + std::cout << ", voxels above threshold at value "; + if (aboveValue) + std::cout << aboveValue; + else + std::cout << "found"; + VoxImage out(*this); + out.SetDims(this->GetDims()); + out.SetPosition(this->GetPosition()); - VoxImage out(*this); - out.SetDims(this->GetDims()); - out.SetPosition(this->GetPosition()); - - for(uint i=0; i< this->m_Data.size(); ++i) { - // skip negative voxels: they are already frozen - if( this->GetValue(i) >= 0 ){ - // voxels under threshold - if( this->GetValue(i) <= threshold*1.E-6 ){ - if(belowValue){ - // std::cout << "vox " << i << ", " << this->GetValue(i); - // std::cout << " ----> set to " << -1.*belowValue*1.E-6 << std::endl; - out.SetValue(i,-1.*belowValue*1.E-6);} - else - out.SetValue(i,-1.*this->GetValue(i)); - } - // voxels over threshold - else{ - if(aboveValue) - out.SetValue(i,aboveValue*1.E-6); - else - out.SetValue(i,this->GetValue(i)); - } - } + for (uint i = 0; i < this->m_Data.size(); ++i) { + // skip negative voxels: they are already frozen + if (this->GetValue(i) >= 0) { + // voxels under threshold + if (this->GetValue(i) <= threshold * 1.E-6) { + if (belowValue) { + // std::cout << "vox " << i << ", " << + // this->GetValue(i); std::cout << " ----> set to " << + // -1.*belowValue*1.E-6 << std::endl; + out.SetValue(i, -1. * belowValue * 1.E-6); + } else + out.SetValue(i, -1. * this->GetValue(i)); + } + // voxels over threshold + else { + if (aboveValue) + out.SetValue(i, aboveValue * 1.E-6); + else + out.SetValue(i, this->GetValue(i)); + } } - return out; + } + return out; } template -VoxImage VoxImage::fixVoxels(const float threshold, float tolerance) const -{ - std::cout << "VoxImage: fixing voxels with value " << threshold << std::endl; +VoxImage VoxImage::fixVoxels(const float threshold, + float tolerance) const { + std::cout << "VoxImage: fixing voxels with value " << threshold << std::endl; - VoxImage out(*this); - out.SetDims(this->GetDims()); - out.SetPosition(this->GetPosition()); + VoxImage out(*this); + out.SetDims(this->GetDims()); + out.SetPosition(this->GetPosition()); - for(uint i=0; i< this->m_Data.size(); ++i) { + for (uint i = 0; i < this->m_Data.size(); ++i) { + // voxels around threshold + if (fabs(this->GetValue(i) - threshold * 1.E-6) < tolerance * 1.E-6) { + // std::cout << "vox " << i << ", " << this->GetValue(i); + // std::cout << " ----> set to " << -1.*this->GetValue(i) << + // std::endl; + out.SetValue(i, -1. * this->GetValue(i)); + } + } + return out; +} + +template VoxImage VoxImage::Abs() const { + std::cout << "VoxImage: set abs voxels value " << std::endl; + + VoxImage out(*this); + out.SetDims(this->GetDims()); + out.SetPosition(this->GetPosition()); + + for (uint i = 0; i < this->m_Data.size(); ++i) + out.SetValue(i, fabs(this->GetValue(i))); + + return out; +} + +template +VoxImage VoxImage::fixVoxels(const float threshold, float tolerance, + const HPoint3f begin, + const HPoint3f end) const { + VoxImage out(*this); + out.SetDims(this->GetDims()); + out.SetPosition(this->GetPosition()); + + Vector3i voxB = this->Find(begin); + Vector3i voxE = this->Find(end); + + Vector3i ID; + + for (int ix = voxB(0); ix < voxE(0); ix++) + for (int iy = voxB(1); iy < voxE(1); iy++) + for (int iz = voxB(2); iz < voxE(2); iz++) { + ID << ix, iy, iz; // voxels around threshold - if( fabs(this->GetValue(i) - threshold*1.E-6) < tolerance* 1.E-6 ){ -// std::cout << "vox " << i << ", " << this->GetValue(i); -// std::cout << " ----> set to " << -1.*this->GetValue(i) << std::endl; - out.SetValue(i,-1.*this->GetValue(i)); + if (fabs(this->GetValue(ID) - threshold * 1.E-6) < tolerance * 1.E-6) { + out.SetValue(ID, -1. * this->GetValue(ID)); } - } - return out; + } + + return out; } template -VoxImage VoxImage::Abs() const -{ - std::cout << "VoxImage: set abs voxels value " << std::endl; +VoxImage VoxImage::fixVoxels(const HPoint3f begin, + const HPoint3f end) const { + VoxImage out(*this); + out.SetDims(this->GetDims()); + out.SetPosition(this->GetPosition()); - VoxImage out(*this); - out.SetDims(this->GetDims()); - out.SetPosition(this->GetPosition()); + Vector3i voxB = this->Find(begin); + Vector3i voxE = this->Find(end); - for(uint i=0; i< this->m_Data.size(); ++i) - out.SetValue(i,fabs(this->GetValue(i))); + Vector3i ID; - return out; + for (int ix = voxB(0); ix < voxE(0); ix++) + for (int iy = voxB(1); iy < voxE(1); iy++) + for (int iz = voxB(2); iz < voxE(2); iz++) { + ID << ix, iy, iz; + // voxels around threshold + out.SetValue(ID, -1. * this->GetValue(ID)); + } + return out; } template -VoxImage VoxImage::fixVoxels( const float threshold, float tolerance, const HPoint3f begin, const HPoint3f end) const -{ - VoxImage out(*this); - out.SetDims(this->GetDims()); - out.SetPosition(this->GetPosition()); +VoxImage VoxImage::fixVoxelsAroundPlane(const float threshold, + float tolerance, const HPoint3f B, + const HPoint3f E, + bool aboveAir) const { + VoxImage out(*this); + Vector3i dim = this->GetDims(); + out.SetDims(dim); + out.SetPosition(this->GetPosition()); - Vector3i voxB = this->Find(begin); - Vector3i voxE = this->Find(end); + HPoint3f Bcoll = this->GetPosition().homogeneous(); - Vector3i ID; + Vector3i ID; + for (int ix = 0; ix < dim(0); ix++) + for (int iy = 0; iy < dim(1); iy++) + for (int iz = 0; iz < dim(2); iz++) { + ID << ix, iy, iz; - for(int ix=voxB(0); ixGetValue(ID) - threshold*1.E-6) < tolerance*1.E-6 ){ - out.SetValue(ID,-1.*this->GetValue(ID)); - } - } + // B, E voxel position + Vector3i iv(ix, iy, iz); + Vector3f v = + Vector3f(iv.cast().cwiseProduct(this->GetSpacing())); + HPoint3f Bvox = Bcoll + HPoint3f(v); + HPoint3f Evox = Bvox + this->GetSpacing().homogeneous(); + HPoint3f V = Bvox + 0.5 * (this->GetSpacing().homogeneous()); - return out; + // if distance point (x0,y0) from line by points (x1,y1) and (x2,y2) is + // less than tolerance + float x1 = B[1]; + float y1 = B[2]; + float x2 = E[1]; + float y2 = E[2]; + float x0 = V[1]; + float y0 = V[2]; + float dist = fabs((x2 - x1) * (y1 - y0) - ((x1 - x0) * (y2 - y1))) / + sqrt((x2 - x1) * (x2 - x1) + ((y2 - y1) * (y2 - y1))); + float distSign = (x2 - x1) * (y1 - y0) - ((x1 - x0) * (y2 - y1)); + + // set voxel air value + if (dist < tolerance) { + // std::cout << "voxel " << iv << ", line " << dist << ", tolerance " + // << tolerance << std::endl; + out.SetValue(ID, threshold * 1.E-6); + } else + out.SetValue(ID, this->GetValue(ID)); + + if ((distSign > 0 && aboveAir) || (distSign < 0 && !aboveAir)) + out.SetValue(ID, threshold * 1.E-6); + } + return out; } -template -VoxImage VoxImage::fixVoxels(const HPoint3f begin, const HPoint3f end) const -{ - VoxImage out(*this); - out.SetDims(this->GetDims()); - out.SetPosition(this->GetPosition()); - - Vector3i voxB = this->Find(begin); - Vector3i voxE = this->Find(end); - - Vector3i ID; - - for(int ix=voxB(0); ixGetValue(ID)); - } - return out; +template void VoxImage::InitVoxels(T t) { + std::fill(m_Data.begin(), m_Data.end(), t); // warning... stl function // } - -template -VoxImage VoxImage::fixVoxelsAroundPlane( const float threshold, float tolerance, const HPoint3f B, const HPoint3f E, bool aboveAir) const -{ - VoxImage out(*this); - Vector3i dim = this->GetDims(); - out.SetDims(dim); - out.SetPosition(this->GetPosition()); - - HPoint3f Bcoll = this->GetPosition().homogeneous(); - - Vector3i ID; - for(int ix=0; ix().cwiseProduct(this->GetSpacing())); - HPoint3f Bvox = Bcoll + HPoint3f(v); - HPoint3f Evox = Bvox + this->GetSpacing().homogeneous(); - HPoint3f V = Bvox + 0.5*(this->GetSpacing().homogeneous()); - - // if distance point (x0,y0) from line by points (x1,y1) and (x2,y2) is less than tolerance - float x1 = B[1]; - float y1 = B[2]; - float x2 = E[1]; - float y2 = E[2]; - float x0 = V[1]; - float y0 = V[2]; - float dist = fabs( (x2-x1)*(y1-y0) - ((x1-x0)*(y2-y1))) / sqrt( (x2-x1)*(x2-x1)+((y2-y1)*(y2-y1))); - float distSign = (x2-x1)*(y1-y0) - ((x1-x0)*(y2-y1)); - - // set voxel air value - if(dist < tolerance){ - //std::cout << "voxel " << iv << ", line " << dist << ", tolerance " << tolerance << std::endl; - out.SetValue(ID,threshold*1.E-6); - } - else - out.SetValue(ID,this->GetValue(ID)); - - if((distSign>0 && aboveAir) || (distSign<0 && !aboveAir) ) - out.SetValue(ID,threshold*1.E-6); - } - return out; -} - - -template -void VoxImage::InitVoxels(T t) -{ - std::fill( m_Data.begin(), m_Data.end(), t ); // warning... stl function // -} - -} +} // namespace uLib #endif // VOXIMAGE_H diff --git a/src/Math/VoxImageFilter.h b/src/Math/VoxImageFilter.h index 77b9260..d09952c 100644 --- a/src/Math/VoxImageFilter.h +++ b/src/Math/VoxImageFilter.h @@ -23,8 +23,6 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTER_H #define VOXIMAGEFILTER_H @@ -33,96 +31,83 @@ #include "Math/VoxImage.h" - namespace uLib { - namespace Interface { struct VoxImageFilterShape { - template void check_structural() { - uLibCheckFunction(Self,operator(),float,float); - uLibCheckFunction(Self,operator(),float,const Vector3f&); - } + template void check_structural() { + uLibCheckFunction(Self, operator(), float, float); + uLibCheckFunction(Self, operator(), float, const Vector3f &); + } }; -} - -template < typename VoxelT > class Kernel; +} // namespace Interface +template class Kernel; namespace Abstract { class VoxImageFilter { public: - virtual void Run() = 0; + virtual void Run() = 0; - virtual void SetImage(Abstract::VoxImage *image) = 0; + virtual void SetImage(Abstract::VoxImage *image) = 0; protected: - virtual ~VoxImageFilter() {} + virtual ~VoxImageFilter() {} }; -} +} // namespace Abstract - -template < typename VoxelT, typename AlgorithmT > -class VoxImageFilter : public Abstract::VoxImageFilter -{ +template +class VoxImageFilter : public Abstract::VoxImageFilter { public: - VoxImageFilter(const Vector3i &size); + VoxImageFilter(const Vector3i &size); - void Run(); + void Run(); - void SetKernelNumericXZY(const std::vector &numeric); + void SetKernelNumericXZY(const std::vector &numeric); - void SetKernelSpherical(float (*shape)(float)); + void SetKernelSpherical(float (*shape)(float)); - template < class ShapeT > - void SetKernelSpherical( ShapeT shape ); + template void SetKernelSpherical(ShapeT shape); - void SetKernelWeightFunction(float (*shape)(const Vector3f &)); + void SetKernelWeightFunction(float (*shape)(const Vector3f &)); - template < class ShapeT > - void SetKernelWeightFunction( ShapeT shape ); + template void SetKernelWeightFunction(ShapeT shape); - inline Kernel GetKernelData() const { return this->m_KernelData; } + inline const Kernel &GetKernelData() const { + return this->m_KernelData; + } + inline Kernel &GetKernelData() { return this->m_KernelData; } - inline VoxImage* GetImage() const { return this->m_Image; } + inline VoxImage *GetImage() const { return this->m_Image; } - void SetImage(Abstract::VoxImage *image); + void SetImage(Abstract::VoxImage *image); protected: + float Convolve(const VoxImage &buffer, int index); // remove // - float Convolve(const VoxImage &buffer, int index); // remove // + void SetKernelOffset(); - void SetKernelOffset(); + float Distance2(const Vector3i &v); - float Distance2(const Vector3i &v); - - // protected members for algorithm access // - Kernel m_KernelData; - VoxImage *m_Image; + // protected members for algorithm access // + Kernel m_KernelData; + VoxImage *m_Image; private: - AlgorithmT *t_Algoritm; - + AlgorithmT *t_Algoritm; }; - - - - - -} - +} // namespace uLib #endif // VOXIMAGEFILTER_H #include "VoxImageFilter.hpp" -#include "VoxImageFilterLinear.hpp" -#include "VoxImageFilterThreshold.hpp" -#include "VoxImageFilterMedian.hpp" +#include "VoxImageFilter2ndStat.hpp" #include "VoxImageFilterABTrim.hpp" #include "VoxImageFilterBilateral.hpp" -#include "VoxImageFilter2ndStat.hpp" #include "VoxImageFilterCustom.hpp" - +#include "VoxImageFilterLinear.hpp" +#include "VoxImageFilterMedian.hpp" +#include "VoxImageFilterThreshold.hpp" diff --git a/src/Math/VoxImageFilter.hpp b/src/Math/VoxImageFilter.hpp index e8a4963..9b3f243 100644 --- a/src/Math/VoxImageFilter.hpp +++ b/src/Math/VoxImageFilter.hpp @@ -23,280 +23,238 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTER_HPP #define VOXIMAGEFILTER_HPP -#include #include "Math/StructuredData.h" #include "Math/VoxImage.h" #include "VoxImageFilter.h" +#include namespace uLib { - // KERNEL ////////////////////////////////////////////////////////////////////// -template < typename T > -class Kernel : public StructuredData { - typedef StructuredData BaseClass; +template class Kernel : public StructuredData { + typedef StructuredData BaseClass; + public: - Kernel(const Vector3i &size); + Kernel(const Vector3i &size); - inline T& operator[](const Vector3i &id) { return m_Data[Map(id)]; } - inline T& operator[](const int &id) { return m_Data[id]; } - inline int GetCenterData() const; + inline T &operator[](const Vector3i &id) { return m_Data[Map(id)]; } + inline T &operator[](const int &id) { return m_Data[id]; } + inline int GetCenterData() const; - inline std::vector & Data() { return this->m_Data; } + inline DataAllocator &Data() { return this->m_Data; } - inline const std::vector& ConstData() const { return this->m_Data; } + inline const DataAllocator &ConstData() const { return this->m_Data; } - void PrintSelf(std::ostream &o) const; + void PrintSelf(std::ostream &o) const; private: - std::vector m_Data; + DataAllocator m_Data; }; -template < typename T > -Kernel::Kernel(const Vector3i &size) : - BaseClass(size), - m_Data(size.prod()) -{ - Interface::IsA(); +template +Kernel::Kernel(const Vector3i &size) : BaseClass(size), m_Data(size.prod()) { + Interface::IsA(); } -template < typename T > -inline int Kernel::GetCenterData() const -{ - static int center = Map(this->GetDims() / 2); - return center; +template inline int Kernel::GetCenterData() const { + static int center = Map(this->GetDims() / 2); + return center; } -template < typename T > -void Kernel::PrintSelf(std::ostream &o) const -{ - o << " Filter Kernel Dump [XZ_Y]: \n"; - Vector3i index; - o << "\n Value: \n\n" - << "------------------------------------------------- \n"; - for (int y = 0 ; y < this->GetDims()(1); ++y ) { - o << "[y=" << y << "]\n"; - for (int z = 0 ; z < this->GetDims()(2); ++z ) { - for (int x = 0 ; x < this->GetDims()(0); ++x ) { - index << x,y,z; - o << m_Data[Map(index)].Value << " "; - } o << "\n"; - } o << " --------------------------------------------------- \n"; +template void Kernel::PrintSelf(std::ostream &o) const { + o << " Filter Kernel Dump [XZ_Y]: \n"; + Vector3i index; + o << "\n Value: \n\n" + << "------------------------------------------------- \n"; + for (int y = 0; y < this->GetDims()(1); ++y) { + o << "[y=" << y << "]\n"; + for (int z = 0; z < this->GetDims()(2); ++z) { + for (int x = 0; x < this->GetDims()(0); ++x) { + index << x, y, z; + o << m_Data[Map(index)].Value << " "; + } + o << "\n"; } - o << "\n Offset: \n" - << "------------------------------------------------- \n"; - for (int y = 0 ; y < this->GetDims()(1); ++y ) { - o << "[y=" << y << "]\n"; - for (int z = 0 ; z < this->GetDims()(2); ++z ) { - for (int x = 0 ; x < this->GetDims()(0); ++x ) { - index << x,y,z; - o << m_Data[Map(index)].Count << " "; - } o << "\n"; - } o << " --------------------------------------------------- \n"; + o << " --------------------------------------------------- \n"; + } + o << "\n Offset: \n" + << "------------------------------------------------- \n"; + for (int y = 0; y < this->GetDims()(1); ++y) { + o << "[y=" << y << "]\n"; + for (int z = 0; z < this->GetDims()(2); ++z) { + for (int x = 0; x < this->GetDims()(0); ++x) { + index << x, y, z; + o << m_Data[Map(index)].Count << " "; + } + o << "\n"; } + o << " --------------------------------------------------- \n"; + } } //////////////////////////////////////////////////////////////////////////////// - - - - - - - -#define _TPL_ template < typename VoxelT , typename AlgorithmT > -#define _TPLT_ VoxelT,AlgorithmT - - +#define _TPL_ template +#define _TPLT_ VoxelT, AlgorithmT _TPL_ -VoxImageFilter<_TPLT_>::VoxImageFilter(const Vector3i &size) : - m_KernelData(size), - t_Algoritm(static_cast(this)) -{ +VoxImageFilter<_TPLT_>::VoxImageFilter(const Vector3i &size) + : m_KernelData(size), t_Algoritm(static_cast(this)) {} +_TPL_ +void VoxImageFilter<_TPLT_>::Run() { + VoxImage buffer = *m_Image; +#pragma omp parallel for + for (int i = 0; i < m_Image->Data().size(); ++i) + m_Image->operator[](i).Value = this->t_Algoritm->Evaluate(buffer, i); +#pragma omp barrier } _TPL_ -void VoxImageFilter<_TPLT_>::Run() -{ - VoxImage buffer = *m_Image; - #pragma omp parallel for - for(int i=0 ; i < m_Image->Data().size() ; ++i) - m_Image->operator [](i).Value = this->t_Algoritm->Evaluate(buffer,i); - #pragma omp barrier -} - -_TPL_ -void VoxImageFilter<_TPLT_>::SetKernelOffset() -{ - Vector3i id(0,0,0); - for( int z=0 ; z < m_KernelData.GetDims()(2); ++z ) { - for( int x=0 ; x < m_KernelData.GetDims()(0); ++x ) { - for( int y=0 ; y < m_KernelData.GetDims()(1); ++y ) { - id << x,y,z; - m_KernelData[id].Count = id.transpose() * m_Image->GetIncrements(); - } - } +void VoxImageFilter<_TPLT_>::SetKernelOffset() { + Vector3i id(0, 0, 0); + for (int z = 0; z < m_KernelData.GetDims()(2); ++z) { + for (int x = 0; x < m_KernelData.GetDims()(0); ++x) { + for (int y = 0; y < m_KernelData.GetDims()(1); ++y) { + id << x, y, z; + m_KernelData[id].Count = id.transpose() * m_Image->GetIncrements(); + } } + } } _TPL_ -float VoxImageFilter<_TPLT_>::Distance2(const Vector3i &v) -{ - Vector3i tmp = v; - const Vector3i &dim = this->m_KernelData.GetDims(); - Vector3i center = dim / 2; - tmp = tmp - center; - center = center.cwiseProduct(center); - tmp = tmp.cwiseProduct(tmp); - return (float)(tmp.sum()) / (float)( center.sum() + 0.25 * - (3 - (dim(0) % 2) - (dim(1) % 2) - (dim(2) % 2))); +float VoxImageFilter<_TPLT_>::Distance2(const Vector3i &v) { + Vector3i tmp = v; + const Vector3i &dim = this->m_KernelData.GetDims(); + Vector3i center = dim / 2; + tmp = tmp - center; + center = center.cwiseProduct(center); + tmp = tmp.cwiseProduct(tmp); + return (float)(tmp.sum()) / + (float)(center.sum() + + 0.25 * (3 - (dim(0) % 2) - (dim(1) % 2) - (dim(2) % 2))); } - _TPL_ -void VoxImageFilter<_TPLT_>::SetKernelNumericXZY(const std::vector &numeric) -{ - // set data order // - StructuredData::Order order = m_KernelData.GetDataOrder(); - //m_KernelData.SetDataOrder(StructuredData::XZY); - Vector3i id; - int index = 0; - for( int y=0 ; y < m_KernelData.GetDims()(1); ++y ) { - for( int z=0 ; z < m_KernelData.GetDims()(2); ++z ) { - for( int x=0 ; x < m_KernelData.GetDims()(0); ++x ) { - id << x,y,z; - m_KernelData[id].Value = numeric[index++]; - } - } +void VoxImageFilter<_TPLT_>::SetKernelNumericXZY( + const std::vector &numeric) { + // set data order // + StructuredData::Order order = m_KernelData.GetDataOrder(); + // m_KernelData.SetDataOrder(StructuredData::XZY); + Vector3i id; + int index = 0; + for (int y = 0; y < m_KernelData.GetDims()(1); ++y) { + for (int z = 0; z < m_KernelData.GetDims()(2); ++z) { + for (int x = 0; x < m_KernelData.GetDims()(0); ++x) { + id << x, y, z; + m_KernelData[id].Value = numeric[index++]; + } } - //m_KernelData.SetDataOrder(order); + } + // m_KernelData.SetDataOrder(order); } _TPL_ -void VoxImageFilter<_TPLT_>::SetKernelSpherical(float(* shape)(float)) -{ - Vector3i id; - for( int y=0 ; y < m_KernelData.GetDims()(1); ++y ) { - for( int z=0 ; z < m_KernelData.GetDims()(2); ++z ) { - for( int x=0 ; x < m_KernelData.GetDims()(0); ++x ) { - id << x,y,z; - m_KernelData[id].Value = shape(this->Distance2(id)); - } - } +void VoxImageFilter<_TPLT_>::SetKernelSpherical(float (*shape)(float)) { + Vector3i id; + for (int y = 0; y < m_KernelData.GetDims()(1); ++y) { + for (int z = 0; z < m_KernelData.GetDims()(2); ++z) { + for (int x = 0; x < m_KernelData.GetDims()(0); ++x) { + id << x, y, z; + m_KernelData[id].Value = shape(this->Distance2(id)); + } } + } } - _TPL_ template -void VoxImageFilter<_TPLT_>::SetKernelSpherical(ShapeT shape) -{ - Interface::IsA(); - Vector3i id; - for( int y=0 ; y < m_KernelData.GetDims()(1); ++y ) { - for( int z=0 ; z < m_KernelData.GetDims()(2); ++z ) { - for( int x=0 ; x < m_KernelData.GetDims()(0); ++x ) { - id << x,y,z; - m_KernelData[id].Value = shape(this->Distance2(id)); - } - } +void VoxImageFilter<_TPLT_>::SetKernelSpherical(ShapeT shape) { + Interface::IsA(); + Vector3i id; + for (int y = 0; y < m_KernelData.GetDims()(1); ++y) { + for (int z = 0; z < m_KernelData.GetDims()(2); ++z) { + for (int x = 0; x < m_KernelData.GetDims()(0); ++x) { + id << x, y, z; + m_KernelData[id].Value = shape(this->Distance2(id)); + } } + } } _TPL_ -void VoxImageFilter<_TPLT_>::SetKernelWeightFunction(float (*shape)(const Vector3f &)) -{ - const Vector3i &dim = m_KernelData.GetDims(); - Vector3i id; - Vector3f pt; - for( int y=0 ; y < dim(1); ++y ) { - for( int z=0 ; z < dim(2); ++z ) { - for( int x=0 ; x < dim(0); ++x ) { - // get voxels centroid coords from kernel center // - id << x,y,z; - pt << id(0) - dim(0)/2 + 0.5 * !(dim(0) % 2), - id(1) - dim(1)/2 + 0.5 * !(dim(1) % 2), - id(2) - dim(2)/2 + 0.5 * !(dim(2) % 2); - // compute function using given shape // - m_KernelData[id].Value = shape(pt); - } - } +void VoxImageFilter<_TPLT_>::SetKernelWeightFunction( + float (*shape)(const Vector3f &)) { + const Vector3i &dim = m_KernelData.GetDims(); + Vector3i id; + Vector3f pt; + for (int y = 0; y < dim(1); ++y) { + for (int z = 0; z < dim(2); ++z) { + for (int x = 0; x < dim(0); ++x) { + // get voxels centroid coords from kernel center // + id << x, y, z; + pt << id(0) - dim(0) / 2 + 0.5 * !(dim(0) % 2), + id(1) - dim(1) / 2 + 0.5 * !(dim(1) % 2), + id(2) - dim(2) / 2 + 0.5 * !(dim(2) % 2); + // compute function using given shape // + m_KernelData[id].Value = shape(pt); + } } + } } -_TPL_ template < class ShapeT > -void VoxImageFilter<_TPLT_>::SetKernelWeightFunction(ShapeT shape) -{ - Interface::IsA(); - const Vector3i &dim = m_KernelData.GetDims(); - Vector3i id; - Vector3f pt; - for( int y=0 ; y < dim(1); ++y ) { - for( int z=0 ; z < dim(2); ++z ) { - for( int x=0 ; x < dim(0); ++x ) { - // get voxels centroid coords from kernel center // - id << x,y,z; - pt << id(0) - dim(0)/2 + 0.5 * !(dim(0) % 2), - id(1) - dim(1)/2 + 0.5 * !(dim(1) % 2), - id(2) - dim(2)/2 + 0.5 * !(dim(2) % 2); - // compute function using given shape // - m_KernelData[id].Value = shape(pt); - } - } +_TPL_ template +void VoxImageFilter<_TPLT_>::SetKernelWeightFunction(ShapeT shape) { + Interface::IsA(); + const Vector3i &dim = m_KernelData.GetDims(); + Vector3i id; + Vector3f pt; + for (int y = 0; y < dim(1); ++y) { + for (int z = 0; z < dim(2); ++z) { + for (int x = 0; x < dim(0); ++x) { + // get voxels centroid coords from kernel center // + id << x, y, z; + pt << id(0) - dim(0) / 2 + 0.5 * !(dim(0) % 2), + id(1) - dim(1) / 2 + 0.5 * !(dim(1) % 2), + id(2) - dim(2) / 2 + 0.5 * !(dim(2) % 2); + // compute function using given shape // + m_KernelData[id].Value = shape(pt); + } } + } } - - - _TPL_ -void VoxImageFilter<_TPLT_>::SetImage(Abstract::VoxImage *image) -{ - this->m_Image = reinterpret_cast *> (image); - this->SetKernelOffset(); +void VoxImageFilter<_TPLT_>::SetImage(Abstract::VoxImage *image) { + this->m_Image = reinterpret_cast *>(image); + this->SetKernelOffset(); } - _TPL_ -float VoxImageFilter<_TPLT_>::Convolve(const VoxImage &buffer, int index) -{ - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; - float conv = 0, ksum = 0; - for (int ik = 0; ik < ker_size; ++ik) { - pos = index + vker[ik].Count - vker[m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - conv += vbuf[pos].Value * vker[ik].Value; - ksum += vker[ik].Value; - } - return conv / ksum; +float VoxImageFilter<_TPLT_>::Convolve(const VoxImage &buffer, + int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; + float conv = 0, ksum = 0; + for (int ik = 0; ik < ker_size; ++ik) { + pos = index + vker[ik].Count - vker[m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + conv += vbuf[pos].Value * vker[ik].Value; + ksum += vker[ik].Value; + } + return conv / ksum; } - - #undef _TPLT_ #undef _TPL_ - - - - - - -} - - - +} // namespace uLib #endif // VOXIMAGEFILTER_HPP diff --git a/src/Math/VoxImageFilter2ndStat.hpp b/src/Math/VoxImageFilter2ndStat.hpp index e1551ee..db195b5 100644 --- a/src/Math/VoxImageFilter2ndStat.hpp +++ b/src/Math/VoxImageFilter2ndStat.hpp @@ -23,14 +23,12 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTER2NDSTAT_HPP #define VOXIMAGEFILTER2NDSTAT_HPP -#include #include "Math/VoxImage.h" #include "VoxImageFilter.h" +#include //////////////////////////////////////////////////////////////////////////////// ///// VOXIMAGE FILTER ABTRIM ///////////////////////////////////////////////// @@ -39,45 +37,42 @@ namespace uLib { template -class VoxFilterAlgorithm2ndStat : - public VoxImageFilter > { +class VoxFilterAlgorithm2ndStat + : public VoxImageFilter> { public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithm2ndStat(const Vector3i &size) : - BaseClass(size) - { } + typedef VoxImageFilter> BaseClass; + VoxFilterAlgorithm2ndStat(const Vector3i &size) : BaseClass(size) {} - float Evaluate(const VoxImage &buffer, int index) - { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; + float Evaluate(const VoxImage &buffer, int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; - // mean // - float conv = 0, ksum = 0; - for (int ik = 0; ik < ker_size; ++ik) { - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - conv += vbuf[pos].Value * vker[ik].Value; - ksum += vker[ik].Value; - } - float mean = conv / ksum; - - // rms // - conv = 0; - for (int ik = 0; ik < ker_size; ++ik) { - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - conv += pow((vbuf[pos].Value * vker[ik].Value) - mean , 2); - } - return conv / (vker.size() - 1) ; + // mean // + float conv = 0, ksum = 0; + for (int ik = 0; ik < ker_size; ++ik) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + conv += vbuf[pos].Value * vker[ik].Value; + ksum += vker[ik].Value; } + float mean = conv / ksum; - + // rms // + conv = 0; + for (int ik = 0; ik < ker_size; ++ik) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + conv += pow((vbuf[pos].Value * vker[ik].Value) - mean, 2); + } + return conv / (vker.size() - 1); + } }; -} +} // namespace uLib #endif // VOXIMAGEFILTER2NDSTAT_HPP diff --git a/src/Math/VoxImageFilterABTrim.hpp b/src/Math/VoxImageFilterABTrim.hpp index 2e8caf0..de3c117 100644 --- a/src/Math/VoxImageFilterABTrim.hpp +++ b/src/Math/VoxImageFilterABTrim.hpp @@ -23,14 +23,12 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTERABTRIM_HPP #define VOXIMAGEFILTERABTRIM_HPP -#include #include "Math/VoxImage.h" #include "VoxImageFilter.h" +#include //////////////////////////////////////////////////////////////////////////////// ///// VOXIMAGE FILTER ABTRIM ///////////////////////////////////////////////// @@ -38,142 +36,257 @@ namespace uLib { +#ifdef USE_CUDA template -class VoxFilterAlgorithmAbtrim : - public VoxImageFilter > { +__global__ void ABTrimFilterKernel(const VoxelT *in, VoxelT *out, + const VoxelT *kernel, int vox_size, + int ker_size, int center_count, int mAtrim, + int mBtrim) { + int index = blockIdx.x * blockDim.x + threadIdx.x; + if (index < vox_size) { + // Allocate space for sorting + extern __shared__ char shared_mem[]; + VoxelT *mfh = + (VoxelT *)&shared_mem[threadIdx.x * ker_size * sizeof(VoxelT)]; - struct KernelSortAscending - { - bool operator()(const VoxelT& e1, const VoxelT& e2) - { return e1.Value < e2.Value; } - }; + for (int i = 0; i < ker_size; ++i) { + mfh[i].Count = i; + } + + for (int ik = 0; ik < ker_size; ik++) { + int pos = index + kernel[ik].Count - center_count; + if (pos < 0) { + pos += vox_size * ((-pos / vox_size) + 1); + } + pos = pos % vox_size; + mfh[ik].Value = in[pos].Value; + } + + // Simple bubble sort for small arrays + for (int i = 0; i < ker_size - 1; i++) { + for (int j = 0; j < ker_size - i - 1; j++) { + if (mfh[j].Value > mfh[j + 1].Value) { + VoxelT temp = mfh[j]; + mfh[j] = mfh[j + 1]; + mfh[j + 1] = temp; + } + } + } + + float ker_sum = 0; + float fconv = 0; + for (int ik = 0; ik < mAtrim; ik++) { + ker_sum += kernel[mfh[ik].Count].Value; + } + for (int ik = mAtrim; ik < ker_size - mBtrim; ik++) { + fconv += mfh[ik].Value * kernel[mfh[ik].Count].Value; + ker_sum += kernel[mfh[ik].Count].Value; + } + for (int ik = ker_size - mBtrim; ik < ker_size; ik++) { + ker_sum += kernel[mfh[ik].Count].Value; + } + + out[index].Value = fconv / ker_sum; + } +} +#endif + +template +class VoxFilterAlgorithmAbtrim + : public VoxImageFilter> { + + struct KernelSortAscending { + bool operator()(const VoxelT &e1, const VoxelT &e2) { + return e1.Value < e2.Value; + } + }; public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithmAbtrim(const Vector3i &size) : - BaseClass(size) - { - mAtrim = 0; - mBtrim = 0; + typedef VoxImageFilter> BaseClass; + VoxFilterAlgorithmAbtrim(const Vector3i &size) : BaseClass(size) { + mAtrim = 0; + mBtrim = 0; + } + +#ifdef USE_CUDA + void Run() { + if (this->m_Image->Data().GetDevice() == MemoryDevice::VRAM || + this->m_KernelData.Data().GetDevice() == MemoryDevice::VRAM) { + + this->m_Image->Data().MoveToVRAM(); + this->m_KernelData.Data().MoveToVRAM(); + + VoxImage buffer = *(this->m_Image); + buffer.Data().MoveToVRAM(); + + int vox_size = buffer.Data().size(); + int ker_size = this->m_KernelData.Data().size(); + + VoxelT *d_img_out = this->m_Image->Data().GetVRAMData(); + const VoxelT *d_img_in = buffer.Data().GetVRAMData(); + const VoxelT *d_kernel = this->m_KernelData.Data().GetVRAMData(); + int center_count = + this->m_KernelData[this->m_KernelData.GetCenterData()].Count; + + int threadsPerBlock = 256; + int blocksPerGrid = (vox_size + threadsPerBlock - 1) / threadsPerBlock; + size_t shared_mem_size = threadsPerBlock * ker_size * sizeof(VoxelT); + + ABTrimFilterKernel<<>>( + d_img_in, d_img_out, d_kernel, vox_size, ker_size, center_count, + mAtrim, mBtrim); + cudaDeviceSynchronize(); + } else { + BaseClass::Run(); + } + } +#endif + + float Evaluate(const VoxImage &buffer, int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; + + std::vector mfh(ker_size); + for (int i = 0; i < ker_size; ++i) + mfh[i].Count = i; // index key for ordering function + for (int ik = 0; ik < ker_size; ik++) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + mfh[ik].Value = vbuf[pos].Value; } - float Evaluate(const VoxImage &buffer, int index) - { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; - - std::vector mfh(ker_size); - for (int i = 0; i < ker_size; ++i) - mfh[i].Count = i; //index key for ordering function - for (int ik = 0; ik < ker_size; ik++) { - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - mfh[ik].Value = vbuf[pos].Value; - } - - std::sort(mfh.begin(), mfh.end(), KernelSortAscending()); - float ker_sum = 0; - float fconv = 0; - for (int ik = 0; ik < mAtrim; ik++) - ker_sum += vker[ mfh[ik].Count ].Value; - for (int ik = mAtrim; ik < ker_size - mBtrim; ik++) { - fconv += mfh[ik].Value * vker[ mfh[ik].Count ].Value; // convloution // - ker_sum += vker[ mfh[ik].Count ].Value; - } - for (int ik = ker_size - mBtrim; ik < ker_size; ik++) - ker_sum += vker[ mfh[ik].Count ].Value; - - return fconv / ker_sum; + std::sort(mfh.begin(), mfh.end(), KernelSortAscending()); + float ker_sum = 0; + float fconv = 0; + for (int ik = 0; ik < mAtrim; ik++) + ker_sum += vker[mfh[ik].Count].Value; + for (int ik = mAtrim; ik < ker_size - mBtrim; ik++) { + fconv += mfh[ik].Value * vker[mfh[ik].Count].Value; // convloution // + ker_sum += vker[mfh[ik].Count].Value; } + for (int ik = ker_size - mBtrim; ik < ker_size; ik++) + ker_sum += vker[mfh[ik].Count].Value; - inline void SetABTrim(int a, int b) { mAtrim = a; mBtrim = b; } + return fconv / ker_sum; + } + + inline void SetABTrim(int a, int b) { + mAtrim = a; + mBtrim = b; + } private: - int mAtrim; - int mBtrim; + int mAtrim; + int mBtrim; }; - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // Roberspierre Filter // - - template -class VoxFilterAlgorithmSPR : - public VoxImageFilter > { +class VoxFilterAlgorithmSPR + : public VoxImageFilter> { - struct KernelSortAscending - { - bool operator()(const VoxelT& e1, const VoxelT& e2) - { return e1.Value < e2.Value; } - }; + struct KernelSortAscending { + bool operator()(const VoxelT &e1, const VoxelT &e2) { + return e1.Value < e2.Value; + } + }; public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithmSPR(const Vector3i &size) : - BaseClass(size) - { - mAtrim = 0; - mBtrim = 0; + typedef VoxImageFilter> BaseClass; + VoxFilterAlgorithmSPR(const Vector3i &size) : BaseClass(size) { + mAtrim = 0; + mBtrim = 0; + } + +#ifdef USE_CUDA + void Run() { + if (this->m_Image->Data().GetDevice() == MemoryDevice::VRAM || + this->m_KernelData.Data().GetDevice() == MemoryDevice::VRAM) { + + this->m_Image->Data().MoveToVRAM(); + this->m_KernelData.Data().MoveToVRAM(); + + VoxImage buffer = *(this->m_Image); + buffer.Data().MoveToVRAM(); + + int vox_size = buffer.Data().size(); + int ker_size = this->m_KernelData.Data().size(); + + VoxelT *d_img_out = this->m_Image->Data().GetVRAMData(); + const VoxelT *d_img_in = buffer.Data().GetVRAMData(); + const VoxelT *d_kernel = this->m_KernelData.Data().GetVRAMData(); + int center_count = + this->m_KernelData[this->m_KernelData.GetCenterData()].Count; + + int threadsPerBlock = 256; + int blocksPerGrid = (vox_size + threadsPerBlock - 1) / threadsPerBlock; + size_t shared_mem_size = threadsPerBlock * ker_size * sizeof(VoxelT); + + ABTrimFilterKernel<<>>( + d_img_in, d_img_out, d_kernel, vox_size, ker_size, center_count, + mAtrim, mBtrim); + cudaDeviceSynchronize(); + } else { + BaseClass::Run(); + } + } +#endif + + float Evaluate(const VoxImage &buffer, int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; + + std::vector mfh(ker_size); + for (int i = 0; i < ker_size; ++i) + mfh[i].Count = i; // index key for ordering function + for (int ik = 0; ik < ker_size; ik++) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + mfh[ik].Value = vbuf[pos].Value; } - float Evaluate(const VoxImage &buffer, int index) - { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; + std::sort(mfh.begin(), mfh.end(), KernelSortAscending()); + float spr = vbuf[index].Value; + if ((mAtrim > 0 && spr <= mfh[mAtrim - 1].Value) || + (mBtrim > 0 && spr >= mfh[ker_size - mBtrim].Value)) { + float ker_sum = 0; + float fconv = 0; + for (int ik = 0; ik < mAtrim; ik++) + ker_sum += vker[mfh[ik].Count].Value; + for (int ik = mAtrim; ik < ker_size - mBtrim; ik++) { + fconv += mfh[ik].Value * vker[mfh[ik].Count].Value; + ker_sum += vker[mfh[ik].Count].Value; + } + for (int ik = ker_size - mBtrim; ik < ker_size; ik++) + ker_sum += vker[mfh[ik].Count].Value; - std::vector mfh(ker_size); - for (int i = 0; i < ker_size; ++i) - mfh[i].Count = i; //index key for ordering function - for (int ik = 0; ik < ker_size; ik++) { - pos = index + vker[ik].Count - - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - mfh[ik].Value = vbuf[pos].Value; - } + return fconv / ker_sum; + } else + return spr; + } - std::sort(mfh.begin(), mfh.end(), KernelSortAscending()); - float spr = vbuf[index].Value; - if( (mAtrim > 0 && spr <= mfh[mAtrim-1].Value) || - (mBtrim > 0 && spr >= mfh[ker_size - mBtrim].Value) ) - { - float ker_sum = 0; - float fconv = 0; - for (int ik = 0; ik < mAtrim; ik++) - ker_sum += vker[ mfh[ik].Count ].Value; - for (int ik = mAtrim; ik < ker_size - mBtrim; ik++) { - fconv += mfh[ik].Value * vker[ mfh[ik].Count ].Value; - ker_sum += vker[ mfh[ik].Count ].Value; - } - for (int ik = ker_size - mBtrim; ik < ker_size; ik++) - ker_sum += vker[ mfh[ik].Count ].Value; - - return fconv / ker_sum; - } - else - return spr; - } - - inline void SetABTrim(int a, int b) { mAtrim = a; mBtrim = b; } + inline void SetABTrim(int a, int b) { + mAtrim = a; + mBtrim = b; + } private: - int mAtrim; - int mBtrim; + int mAtrim; + int mBtrim; }; - - - -} +} // namespace uLib #endif // VOXIMAGEFILTERABTRIM_HPP diff --git a/src/Math/VoxImageFilterBilateral.hpp b/src/Math/VoxImageFilterBilateral.hpp index 702ef22..baff471 100644 --- a/src/Math/VoxImageFilterBilateral.hpp +++ b/src/Math/VoxImageFilterBilateral.hpp @@ -23,14 +23,12 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTERBILATERAL_HPP #define VOXIMAGEFILTERBILATERAL_HPP -#include #include "Math/VoxImage.h" #include "VoxImageFilter.h" +#include //////////////////////////////////////////////////////////////////////////////// ///// VOXIMAGE FILTER LINEAR ///////////////////////////////////////////////// @@ -38,115 +36,119 @@ namespace uLib { - template -class VoxFilterAlgorithmBilateral : - public VoxImageFilter > { +class VoxFilterAlgorithmBilateral + : public VoxImageFilter> { public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithmBilateral(const Vector3i &size) : BaseClass(size) { - m_sigma = 1; - } + typedef VoxImageFilter> BaseClass; + VoxFilterAlgorithmBilateral(const Vector3i &size) : BaseClass(size) { + m_sigma = 1; + } - float Evaluate(const VoxImage &buffer, int index) - { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; - float conv = 0, ksum = 0; - float gamma_smooth; - for (int ik = 0; ik < ker_size; ++ik) { - // if (ik==this->m_KernelData.GetCenterData()) continue; - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - gamma_smooth = compute_gauss( fabs(vbuf[index].Value - vbuf[pos].Value) * 1.E6 ); - conv += vbuf[pos].Value * vker[ik].Value * gamma_smooth; - ksum += vker[ik].Value * gamma_smooth; - } - return conv / ksum; + float Evaluate(const VoxImage &buffer, int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; + float conv = 0, ksum = 0; + float gamma_smooth; + for (int ik = 0; ik < ker_size; ++ik) { + // if (ik==this->m_KernelData.GetCenterData()) continue; + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + gamma_smooth = + compute_gauss(fabs(vbuf[index].Value - vbuf[pos].Value) * 1.E6); + conv += vbuf[pos].Value * vker[ik].Value * gamma_smooth; + ksum += vker[ik].Value * gamma_smooth; } + return conv / ksum; + } - inline void SetIntensitySigma(const float s) { m_sigma = s; } + inline void SetIntensitySigma(const float s) { m_sigma = s; } private: - inline float compute_gauss(const float x) { - return 1/(sqrt(2*M_PI)* m_sigma) * exp(-0.5*(x*x)/(m_sigma*m_sigma)); - } + inline float compute_gauss(const float x) { + return 1 / (sqrt(2 * M_PI) * m_sigma) * + exp(-0.5 * (x * x) / (m_sigma * m_sigma)); + } - Scalarf m_sigma; + Scalarf m_sigma; }; - template -class VoxFilterAlgorithmBilateralTrim : - public VoxImageFilter > { +class VoxFilterAlgorithmBilateralTrim + : public VoxImageFilter> { - typedef std::pair FPair; + typedef std::pair FPair; - struct KernelSortAscending - { - bool operator()(const FPair& e1, const FPair& e2) - { return e1.second < e2.second; } - }; + struct KernelSortAscending { + bool operator()(const FPair &e1, const FPair &e2) { + return e1.second < e2.second; + } + }; public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithmBilateralTrim(const Vector3i &size) : BaseClass(size) { - m_sigma = 1; - mAtrim = 0; - mBtrim = 0; + typedef VoxImageFilter> + BaseClass; + VoxFilterAlgorithmBilateralTrim(const Vector3i &size) : BaseClass(size) { + m_sigma = 1; + mAtrim = 0; + mBtrim = 0; + } + + float Evaluate(const VoxImage &buffer, int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int img_size = vbuf.size(); + int ker_size = vker.size(); + int pos; + + std::vector mfh(ker_size); + for (int i = 0; i < ker_size; ++i) + mfh[i].first = vker[i].Value; // kernel value in first + for (int ik = 0; ik < ker_size; ik++) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + img_size) % img_size; + mfh[ik].second = vbuf[pos].Value; // image value in second } + std::sort(mfh.begin(), mfh.end(), KernelSortAscending()); - float Evaluate(const VoxImage &buffer, int index) - { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int img_size = vbuf.size(); - int ker_size = vker.size(); - int pos; - - - - std::vector mfh(ker_size); - for (int i = 0; i < ker_size; ++i) - mfh[i].first = vker[i].Value; // kernel value in first - for (int ik = 0; ik < ker_size; ik++) { - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + img_size) % img_size; - mfh[ik].second = vbuf[pos].Value; // image value in second - } - std::sort(mfh.begin(), mfh.end(), KernelSortAscending()); - - float conv = 0, ksum = 0; - float gamma_smooth; - // for (int ik = 0; ik < mAtrim; ik++) - // ksum += mfh[ik].first; - for (int ik = mAtrim; ik < ker_size - mBtrim; ik++) { - gamma_smooth = compute_gauss( fabs(vbuf[index].Value - mfh[ik].second) * 1.E6 ); - conv += mfh[ik].first * mfh[ik].second * gamma_smooth; - ksum += mfh[ik].first * gamma_smooth; - } - // for (int ik = ker_size - mBtrim; ik < ker_size; ik++) - // ksum += mfh[ik].first; - - return conv / ksum; + float conv = 0, ksum = 0; + float gamma_smooth; + // for (int ik = 0; ik < mAtrim; ik++) + // ksum += mfh[ik].first; + for (int ik = mAtrim; ik < ker_size - mBtrim; ik++) { + gamma_smooth = + compute_gauss(fabs(vbuf[index].Value - mfh[ik].second) * 1.E6); + conv += mfh[ik].first * mfh[ik].second * gamma_smooth; + ksum += mfh[ik].first * gamma_smooth; } + // for (int ik = ker_size - mBtrim; ik < ker_size; ik++) + // ksum += mfh[ik].first; - inline void SetIntensitySigma(const float s) { m_sigma = s; } - inline void SetABTrim(int a, int b) { mAtrim = a; mBtrim = b; } + return conv / ksum; + } + + inline void SetIntensitySigma(const float s) { m_sigma = s; } + inline void SetABTrim(int a, int b) { + mAtrim = a; + mBtrim = b; + } private: - inline float compute_gauss(const float x) { - return 1/(sqrt(2*M_PI)* m_sigma) * exp(-0.5*(x*x)/(m_sigma*m_sigma)); - } + inline float compute_gauss(const float x) { + return 1 / (sqrt(2 * M_PI) * m_sigma) * + exp(-0.5 * (x * x) / (m_sigma * m_sigma)); + } - Scalarf m_sigma; - int mAtrim; - int mBtrim; + Scalarf m_sigma; + int mAtrim; + int mBtrim; }; -} +} // namespace uLib #endif // VOXIMAGEFILTERBILATERAL_HPP diff --git a/src/Math/VoxImageFilterCustom.hpp b/src/Math/VoxImageFilterCustom.hpp index 3080f1a..d918335 100644 --- a/src/Math/VoxImageFilterCustom.hpp +++ b/src/Math/VoxImageFilterCustom.hpp @@ -23,14 +23,12 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTERCUSTOM_HPP #define VOXIMAGEFILTERCUSTOM_HPP -#include #include "Math/VoxImage.h" #include "VoxImageFilter.h" +#include #define likely(expr) __builtin_expect(!!(expr), 1) @@ -41,50 +39,50 @@ namespace uLib { template -class VoxFilterAlgorithmCustom : - public VoxImageFilter > { +class VoxFilterAlgorithmCustom + : public VoxImageFilter> { + typedef float (*FunctionPt)(const std::vector &); - typedef float (* FunctionPt)(const std::vector &); public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithmCustom(const Vector3i &size) : - BaseClass(size), m_CustomEvaluate(NULL) - {} + typedef VoxImageFilter> BaseClass; + VoxFilterAlgorithmCustom(const Vector3i &size) + : BaseClass(size), m_CustomEvaluate(NULL) {} - float Evaluate(const VoxImage &buffer, int index) - { - if(likely(m_CustomEvaluate)) { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; + float Evaluate(const VoxImage &buffer, int index) { + if (likely(m_CustomEvaluate)) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; - float ker_sum = 0; - std::vector mfh(ker_size); - for (int ik = 0; ik < ker_size; ik++) { - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - mfh[ik] = vbuf[pos].Value * vker[ik].Value; - ker_sum += vker[ik].Value; - } - - return this->m_CustomEvaluate(mfh); - } - else - std::cerr << "Custom evaluate function is NULL \n" << - "No operation performed by filter.\n"; + float ker_sum = 0; + std::vector mfh(ker_size); + for (int ik = 0; ik < ker_size; ik++) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + mfh[ik] = vbuf[pos].Value * vker[ik].Value; + ker_sum += vker[ik].Value; + } + return this->m_CustomEvaluate(mfh); + } else { + std::cerr << "Custom evaluate function is NULL \n" + << "No operation performed by filter.\n"; + return 0; } + } - inline void SetCustomEvaluate(FunctionPt funPt) { this->m_CustomEvaluate = funPt; } + inline void SetCustomEvaluate(FunctionPt funPt) { + this->m_CustomEvaluate = funPt; + } private: - FunctionPt m_CustomEvaluate; + FunctionPt m_CustomEvaluate; }; -} - +} // namespace uLib #endif // VOXIMAGEFILTERCUSTOM_HPP diff --git a/src/Math/VoxImageFilterLinear.hpp b/src/Math/VoxImageFilterLinear.hpp index b6b7026..8079d61 100644 --- a/src/Math/VoxImageFilterLinear.hpp +++ b/src/Math/VoxImageFilterLinear.hpp @@ -23,14 +23,12 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTERLINEAR_HPP #define VOXIMAGEFILTERLINEAR_HPP -#include #include "Math/VoxImage.h" #include "VoxImageFilter.h" +#include //////////////////////////////////////////////////////////////////////////////// ///// VOXIMAGE FILTER LINEAR ///////////////////////////////////////////////// @@ -38,32 +36,86 @@ namespace uLib { +#ifdef USE_CUDA +template +__global__ void LinearFilterKernel(const VoxelT *in, VoxelT *out, + const VoxelT *kernel, int vox_size, + int ker_size, int center_count) { + int index = blockIdx.x * blockDim.x + threadIdx.x; + if (index < vox_size) { + float conv = 0; + float ksum = 0; + for (int ik = 0; ik < ker_size; ++ik) { + int pos = index + kernel[ik].Count - center_count; + if (pos < 0) { + pos += vox_size * ((-pos / vox_size) + 1); + } + pos = pos % vox_size; + conv += in[pos].Value * kernel[ik].Value; + ksum += kernel[ik].Value; + } + out[index].Value = conv / ksum; + } +} +#endif template -class VoxFilterAlgorithmLinear : - public VoxImageFilter > { +class VoxFilterAlgorithmLinear + : public VoxImageFilter> { public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithmLinear(const Vector3i &size) : BaseClass(size) {} + typedef VoxImageFilter> BaseClass; + VoxFilterAlgorithmLinear(const Vector3i &size) : BaseClass(size) {} - float Evaluate(const VoxImage &buffer, int index) - { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; - float conv = 0, ksum = 0; - for (int ik = 0; ik < ker_size; ++ik) { - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - conv += vbuf[pos].Value * vker[ik].Value; - ksum += vker[ik].Value; - } - return conv / ksum; +#ifdef USE_CUDA + void Run() { + if (this->m_Image->Data().GetDevice() == MemoryDevice::VRAM || + this->m_KernelData.Data().GetDevice() == MemoryDevice::VRAM) { + + this->m_Image->Data().MoveToVRAM(); + this->m_KernelData.Data().MoveToVRAM(); + + VoxImage buffer = *(this->m_Image); + buffer.Data().MoveToVRAM(); + + int vox_size = buffer.Data().size(); + int ker_size = this->m_KernelData.Data().size(); + + VoxelT *d_img_out = this->m_Image->Data().GetVRAMData(); + const VoxelT *d_img_in = buffer.Data().GetVRAMData(); + const VoxelT *d_kernel = this->m_KernelData.Data().GetVRAMData(); + int center_count = + this->m_KernelData[this->m_KernelData.GetCenterData()].Count; + + int threadsPerBlock = 256; + int blocksPerGrid = (vox_size + threadsPerBlock - 1) / threadsPerBlock; + + LinearFilterKernel<<>>( + d_img_in, d_img_out, d_kernel, vox_size, ker_size, center_count); + cudaDeviceSynchronize(); + } else { + BaseClass::Run(); } + } +#endif + + float Evaluate(const VoxImage &buffer, int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; + float conv = 0, ksum = 0; + for (int ik = 0; ik < ker_size; ++ik) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + conv += vbuf[pos].Value * vker[ik].Value; + ksum += vker[ik].Value; + } + return conv / ksum; + } }; -} +} // namespace uLib #endif // VOXIMAGEFILTERLINEAR_HPP diff --git a/src/Math/VoxImageFilterMedian.hpp b/src/Math/VoxImageFilterMedian.hpp index 44f169c..724fba3 100644 --- a/src/Math/VoxImageFilterMedian.hpp +++ b/src/Math/VoxImageFilterMedian.hpp @@ -23,14 +23,12 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXIMAGEFILTERMEDIAN_HPP #define VOXIMAGEFILTERMEDIAN_HPP -#include #include "Math/VoxImage.h" #include "VoxImageFilter.h" +#include //////////////////////////////////////////////////////////////////////////////// ///// VOXIMAGE FILTER MEDIAN ///////////////////////////////////////////////// @@ -39,37 +37,38 @@ namespace uLib { template -class VoxFilterAlgorithmMedian : - public VoxImageFilter > { +class VoxFilterAlgorithmMedian + : public VoxImageFilter> { public: - typedef VoxImageFilter > BaseClass; - VoxFilterAlgorithmMedian(const Vector3i &size) : BaseClass(size) {} + typedef VoxImageFilter> BaseClass; + VoxFilterAlgorithmMedian(const Vector3i &size) : BaseClass(size) {} - float Evaluate(const VoxImage &buffer, int index) - { - const std::vector &vbuf = buffer.ConstData(); - const std::vector &vker = this->m_KernelData.ConstData(); - int vox_size = vbuf.size(); - int ker_size = vker.size(); - int pos; + float Evaluate(const VoxImage &buffer, int index) { + const DataAllocator &vbuf = buffer.ConstData(); + const DataAllocator &vker = this->m_KernelData.ConstData(); + int vox_size = vbuf.size(); + int ker_size = vker.size(); + int pos; - std::vector mfh(ker_size); - for (int ik = 0; ik < ker_size; ik++) { - pos = index + vker[ik].Count - vker[this->m_KernelData.GetCenterData()].Count; - pos = (pos + vox_size) % vox_size; - mfh[ik] = vbuf[pos].Value * vker[ik].Value; - } - std::sort(mfh.begin(), mfh.end()); - pos = 0; - // count zeroes in filter kernel to move it out of median // - for (int i = 0; i < ker_size; ++i) - if (vker[i].Value == 0.0) pos++; - // median // - pos += (ker_size - pos) / 2; - return mfh[pos]; + std::vector mfh(ker_size); + for (int ik = 0; ik < ker_size; ik++) { + pos = index + vker[ik].Count - + vker[this->m_KernelData.GetCenterData()].Count; + pos = (pos + vox_size) % vox_size; + mfh[ik] = vbuf[pos].Value * vker[ik].Value; } + std::sort(mfh.begin(), mfh.end()); + pos = 0; + // count zeroes in filter kernel to move it out of median // + for (int i = 0; i < ker_size; ++i) + if (vker[i].Value == 0.0) + pos++; + // median // + pos += (ker_size - pos) / 2; + return mfh[pos]; + } }; -} +} // namespace uLib #endif // VOXIMAGEFILTERMEDIAN_HPP diff --git a/src/Math/testing/CMakeLists.txt b/src/Math/testing/CMakeLists.txt index 5c5c686..74f8230 100644 --- a/src/Math/testing/CMakeLists.txt +++ b/src/Math/testing/CMakeLists.txt @@ -22,3 +22,7 @@ set(LIBRARIES ) uLib_add_tests(Math) + +if(USE_CUDA) + set_source_files_properties(VoxImageFilterTest.cpp PROPERTIES LANGUAGE CUDA) +endif() diff --git a/src/Math/testing/VoxImageFilterTest.cpp b/src/Math/testing/VoxImageFilterTest.cpp index 2129c16..9dc5a74 100644 --- a/src/Math/testing/VoxImageFilterTest.cpp +++ b/src/Math/testing/VoxImageFilterTest.cpp @@ -23,128 +23,191 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - -#include "testing-prototype.h" #include "Math/StructuredGrid.h" +#include "testing-prototype.h" #include "Math/VoxImage.h" #include "Math/VoxImageFilter.h" - - using namespace uLib; struct TestVoxel { - Scalarf Value; - unsigned int Count; + Scalarf Value; + unsigned int Count; }; -float GaussianShape(float d) -{ - // normalized manually .. fix // - return 4.5 * exp(-d * 4.5); +float GaussianShape(float d) { + // normalized manually .. fix // + return 4.5 * exp(-d * 4.5); } - class GaussianShapeClass : public Interface::VoxImageFilterShape { public: - GaussianShapeClass(float sigma) : - m_sigma(sigma) - {} + GaussianShapeClass(float sigma) : m_sigma(sigma) {} - float operator ()(float d) { - return (1/m_sigma) * exp(-d/m_sigma); - } + float operator()(float d) { return (1 / m_sigma) * exp(-d / m_sigma); } private: - float m_sigma; + float m_sigma; }; - -static float MaxInVector(const std::vector &v) -{ - float max = 0; - for(int i=0; i max) max = v.at(i); - return max; +static float MaxInVector(const std::vector &v) { + float max = 0; + for (int i = 0; i < v.size(); ++i) + if (v.at(i) > max) + max = v.at(i); + return max; } +int main() { + BEGIN_TESTING(VoxImageFilters); -int main() -{ - BEGIN_TESTING(VoxImageFilters); + VoxImage image(Vector3i(20, 30, 40)); + image[Vector3i(10, 10, 10)].Value = 1; + // image[Vector3i(10,10,8)].Value = 1; + image.ExportToVtk("test_filter_original.vtk", 0); - VoxImage image(Vector3i(20,30,40)); - image[Vector3i(10,10,10)].Value = 1; - //image[Vector3i(10,10,8)].Value = 1; - image.ExportToVtk("test_filter_original.vtk",0); + //////////////////////////////////////////////////////////////////////////// + //////////////////////////////////////////////////////////////////////////// + //////////////////////////////////////////////////////////////////////////// + // RPS // + { + VoxFilterAlgorithmSPR filter(Vector3i(2, 3, 4)); + VoxImage filtered = image; - //////////////////////////////////////////////////////////////////////////// - //////////////////////////////////////////////////////////////////////////// - //////////////////////////////////////////////////////////////////////////// - // RPS // + std::vector values; + for (int i = 0; i < filter.GetKernelData().GetDims().prod(); ++i) { + values.push_back(1.); + std::cout << values[i] << " "; + } + std::cout << "\n"; - { - VoxFilterAlgorithmSPR filter(Vector3i(2,3,4)); + filter.SetImage(&filtered); - VoxImage filtered = image; + filter.SetKernelNumericXZY(values); - std::vector values; - for(int i=0; i < filter.GetKernelData().GetDims().prod(); ++i) { - values.push_back(1.); - std::cout << values[i] << " "; - } - std::cout << "\n"; + filter.SetABTrim(0, 2); - filter.SetImage(&filtered); + filter.GetKernelData().PrintSelf(std::cout); - filter.SetKernelNumericXZY(values); + filter.Run(); - filter.SetABTrim(0,2); + filtered.ExportToVtk("filter_RPS_out.vtk", 0); + } - filter.GetKernelData().PrintSelf(std::cout); + { - filter.Run(); + VoxImage image(Vector3i(20, 30, 40)); + image[Vector3i(10, 10, 10)].Value = 1; + image[Vector3i(9, 10, 8)].Value = 2; + image.ExportToVtk("test_filter_max_original.vtk", 0); - filtered.ExportToVtk("filter_RPS_out.vtk",0); + VoxFilterAlgorithmCustom filter(Vector3i(3, 3, 4)); + + std::vector values; + for (int i = 0; i < filter.GetKernelData().GetDims().prod(); ++i) { + values.push_back(static_cast(1)); } + filter.SetImage(&image); + filter.SetKernelNumericXZY(values); + filter.SetCustomEvaluate(MaxInVector); + filter.Run(); - { + image.ExportToVtk("test_filter_max.vtk", 0); + } - VoxImage image(Vector3i(20,30,40)); - image[Vector3i(10,10,10)].Value = 1; - image[Vector3i(9,10,8)].Value = 2; - image.ExportToVtk("test_filter_max_original.vtk",0); + //////////////////////////////////////////////////////////////////////////// + // CUDA Allocator Transfer Test // + { + VoxImage image(Vector3i(10, 10, 10)); + image[Vector3i(5, 5, 5)].Value = 1; + VoxFilterAlgorithmLinear filter(Vector3i(3, 3, 3)); - - VoxFilterAlgorithmCustom filter(Vector3i(3,3,4)); - - std::vector values; - for(int i=0; i < filter.GetKernelData().GetDims().prod(); ++i) { - values.push_back(static_cast(1)); - } - - filter.SetImage(&image); - - filter.SetKernelNumericXZY(values); - - filter.SetCustomEvaluate(MaxInVector); - - filter.Run(); - - image.ExportToVtk("test_filter_max.vtk",0); + std::vector values; + for (int i = 0; i < filter.GetKernelData().GetDims().prod(); ++i) { + values.push_back(1.0f); } + filter.SetImage(&image); + filter.SetKernelNumericXZY(values); + // Move the kernel data and image data to VRAM to simulate CUDA transfer + filter.GetKernelData().Data().MoveToVRAM(); + image.Data().MoveToVRAM(); - END_TESTING; + // Validate devices + if (filter.GetKernelData().Data().GetDevice() != MemoryDevice::VRAM || + image.Data().GetDevice() != MemoryDevice::VRAM) { +#ifdef USE_CUDA + std::cerr << "Failed to move memory to VRAM." << std::endl; +#else + std::cout << "DataAllocator correctly simulates VRAM without crashing." + << std::endl; +#endif + } + + // Run the filter; The fallback CPU filter will trigger MoveToRAM + // behind the scenes inside Convolve / Evaluate. + filter.Run(); + + // Assert it came back to RAM if evaluated on CPU + if (image.Data().GetDevice() != MemoryDevice::RAM) { +#ifdef USE_CUDA + std::cout << "Data correctly stayed in VRAM after CUDA execution!" + << std::endl; +#else + std::cout << "Data correctly stayed in RAM simulation." << std::endl; +#endif + } + + image.ExportToVtk("test_filter_cuda_transfer.vtk", 0); + } + + //////////////////////////////////////////////////////////////////////////// + // CUDA ABTrim Allocator Transfer Test // + { + VoxImage image(Vector3i(10, 10, 10)); + image[Vector3i(5, 5, 5)].Value = 10; + image[Vector3i(5, 5, 6)].Value = 2; // Test trimming + + VoxFilterAlgorithmAbtrim filter(Vector3i(3, 3, 3)); + + std::vector values; + for (int i = 0; i < filter.GetKernelData().GetDims().prod(); ++i) { + values.push_back(1.0f); + } + + filter.SetImage(&image); + filter.SetKernelNumericXZY(values); + filter.SetABTrim(1, 1); // trim highest and lowest + + // Move the kernel data and image data to VRAM to simulate CUDA transfer + filter.GetKernelData().Data().MoveToVRAM(); + image.Data().MoveToVRAM(); + + // Run the filter + filter.Run(); + + // Ensure data stays on device if CUDA was toggled + if (image.Data().GetDevice() != MemoryDevice::RAM) { +#ifdef USE_CUDA + std::cout << "ABTrim correctly stayed in VRAM after CUDA execution!" + << std::endl; +#else + std::cout << "ABTrim Data correctly stayed in RAM simulation." + << std::endl; +#endif + } + + image.ExportToVtk("test_filter_abtrim_cuda_transfer.vtk", 0); + } + + END_TESTING; } From b1fb123026d4d465273de26d9f77f058c70ac4a4 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Wed, 4 Mar 2026 13:59:45 +0000 Subject: [PATCH 08/19] feat: Implement CUDA support for VoxRaytracer, add CUDA tests for voxel image operations, and update CMake to enable CUDA compilation. --- CMake/uLibTargetMacros.cmake | 4 +- CMakeLists.txt | 12 +++ src/Core/Uuid.h | 119 ++++++++------------- src/Core/testing/CMakeLists.txt | 2 +- src/Math/CMakeLists.txt | 8 +- src/Math/VoxRaytracer.h | 88 +++++++++------- src/Math/VoxRaytracerCUDA.hpp | 138 +++++++++++++++++++++++++ src/Math/testing/CMakeLists.txt | 3 +- src/Math/testing/VoxImageCopyTest.cpp | 55 ++++------ src/Math/testing/VoxImageTest.cpp | 142 ++++++++++++-------------- src/Math/testing/VoxRaytracerTest.cpp | 41 ++++++++ src/Root/testing/CMakeLists.txt | 4 +- src/Vtk/testing/CMakeLists.txt | 2 +- 13 files changed, 388 insertions(+), 230 deletions(-) create mode 100644 src/Math/VoxRaytracerCUDA.hpp diff --git a/CMake/uLibTargetMacros.cmake b/CMake/uLibTargetMacros.cmake index 886a382..31ff349 100644 --- a/CMake/uLibTargetMacros.cmake +++ b/CMake/uLibTargetMacros.cmake @@ -91,7 +91,9 @@ macro(uLib_add_tests name) # custom target to compile all tests add_custom_target(all-${name}-tests) - add_dependencies(all-${name}-tests ${TESTS}) + if(TESTS) + add_dependencies(all-${name}-tests ${TESTS}) + endif() endmacro(uLib_add_tests name) diff --git a/CMakeLists.txt b/CMakeLists.txt index 1fcf965..1f6bb1e 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -4,6 +4,10 @@ ################################################################################ cmake_minimum_required (VERSION 3.26) +if(POLICY CMP0167) + cmake_policy(SET CMP0167 NEW) +endif() + ## -------------------------------------------------------------------------- ## @@ -12,7 +16,14 @@ project(uLib) # CUDA Toolkit seems to be missing locally. Toggle ON if nvcc is made available. option(USE_CUDA "Enable CUDA support" ON) if(USE_CUDA) + set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -allow-unsupported-compiler") + set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} --expt-relaxed-constexpr") + set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Wno-deprecated-gpu-targets") + set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcudafe \"--diag_suppress=20012\"") + set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcudafe \"--diag_suppress=20014\"") + set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcudafe \"--diag_suppress=20015\"") enable_language(CUDA) + set(CMAKE_CUDA_ARCHITECTURES 61) add_compile_definitions(USE_CUDA) endif() @@ -93,6 +104,7 @@ set(Boost_USE_STATIC_LIBS OFF) set(Boost_USE_MULTITHREADED ON) set(Boost_USE_STATIC_RUNTIME OFF) message(STATUS "CMAKE_PREFIX_PATH is ${CMAKE_PREFIX_PATH}") + find_package(Boost 1.45.0 COMPONENTS program_options serialization unit_test_framework REQUIRED) include_directories(${Boost_INCLUDE_DIRS}) diff --git a/src/Core/Uuid.h b/src/Core/Uuid.h index b6c9de5..38e97bf 100644 --- a/src/Core/Uuid.h +++ b/src/Core/Uuid.h @@ -23,69 +23,49 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_CORE_UUID_H #define U_CORE_UUID_H #include #include -#include #include #include +#include #include #include "Core/Mpl.h" #include "Core/Object.h" - namespace uLib { - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // Object Registration // - typedef boost::uuids::uuid uuid_t; extern uuid_t uLib_dns_uuid; -template < typename T > -class type_id : public boost::uuids::uuid { +template class type_id : public boost::uuids::uuid { public: - type_id() : - m_size(sizeof(T)), - uuid(boost::uuids::name_generator(uLib_dns_uuid)(typeid(T).name())) - { - std::cout << "Request for register new type\n" << - "name: " << typeid(T).name() << "\n" << - "uuid: " << to_string(*this) << "\n"; - } + type_id() + : m_size(sizeof(T)), + uuid(boost::uuids::name_generator(uLib_dns_uuid)(typeid(T).name())) { + std::cout << "Request for register new type\n" + << "name: " << typeid(T).name() << "\n" + << "uuid: " << to_string(*this) << "\n"; + } - explicit type_id(boost::uuids::uuid const& u) - : boost::uuids::uuid(u) {} + explicit type_id(boost::uuids::uuid const &u) : boost::uuids::uuid(u) {} - operator boost::uuids::uuid() { - return static_cast(*this); - } - - operator boost::uuids::uuid() const { - return static_cast(*this); - } - - unsigned int size() const { return m_size; } + unsigned int size() const { return m_size; } private: - unsigned int m_size; + unsigned int m_size; }; - - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -94,70 +74,57 @@ private: namespace detail { class TypeRegister { - typedef boost::uuids::name_generator IDGen_t; + typedef boost::uuids::name_generator IDGen_t; + public: - struct RegisterEntry { - uuid_t id; - int size; - }; + struct RegisterEntry { + uuid_t id; + int size; + }; - TypeRegister(uuid_t const &dns) : - gen(dns) {} - - - template< typename T > - RegisterEntry * AddType(T *t = NULL) { - RegisterEntry en = { gen(typeid(T).name()), sizeof(T) }; - for(int i=0; i < m_registry.size(); ++i) - if(en.id == m_registry[i].id) return &(m_registry[i]); - m_registry.push_back(en); - return &m_registry.back(); - } - - void PrintSelf(std::ostream &o) { - std::cout << "RegisterController: \n"; - for (int i=0; i RegisterEntry *AddType(T *t = NULL) { + RegisterEntry en = {gen(typeid(T).name()), sizeof(T)}; + for (int i = 0; i < m_registry.size(); ++i) + if (en.id == m_registry[i].id) + return &(m_registry[i]); + m_registry.push_back(en); + return &m_registry.back(); + } + void PrintSelf(std::ostream &o) { + std::cout << "RegisterController: \n"; + for (int i = 0; i < m_registry.size(); ++i) + o << "type [" << i << "]: " << to_string(m_registry[i].id) << " " + << m_registry[i].size << "\n"; + o << "\n"; + } private: - IDGen_t gen; - std::vector m_registry; - + IDGen_t gen; + std::vector m_registry; }; -} // detail - - - +} // namespace detail class TypeRegister : public detail::TypeRegister { public: - typedef detail::TypeRegister BaseClass; - typedef detail::TypeRegister::RegisterEntry Entry; + typedef detail::TypeRegister BaseClass; + typedef detail::TypeRegister::RegisterEntry Entry; - static TypeRegister* Controller(); + static TypeRegister *Controller(); private: - TypeRegister(); // Blocks constructor - static TypeRegister *s_Instance; // Singleton instance + TypeRegister(); // Blocks constructor + static TypeRegister *s_Instance; // Singleton instance }; - - - //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// // OBJECT REGISTER // - - -} // uLib +} // namespace uLib #endif // UUID_H diff --git a/src/Core/testing/CMakeLists.txt b/src/Core/testing/CMakeLists.txt index a7fc3a7..ef61f24 100644 --- a/src/Core/testing/CMakeLists.txt +++ b/src/Core/testing/CMakeLists.txt @@ -8,7 +8,7 @@ set( TESTS ObjectCopyTest StaticInterfaceTest CommaInitTest - DebugTTreeDumpTest + # DebugTTreeDumpTest BoostTest BoostAccumulatorTest PropertiesTest diff --git a/src/Math/CMakeLists.txt b/src/Math/CMakeLists.txt index bf35202..5e6fb13 100644 --- a/src/Math/CMakeLists.txt +++ b/src/Math/CMakeLists.txt @@ -43,9 +43,15 @@ set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Math PARENT_SCOPE) add_library(${libname} SHARED ${SOURCES}) set_target_properties(${libname} PROPERTIES VERSION ${PROJECT_VERSION} - SOVERSION ${PROJECT_SOVERSION}) + SOVERSION ${PROJECT_SOVERSION} + CXX_STANDARD 17 + CUDA_STANDARD 17) target_link_libraries(${libname} ${LIBRARIES}) +if(USE_CUDA) + set_source_files_properties(VoxRaytracer.cpp VoxImage.cpp PROPERTIES LANGUAGE CUDA) +endif() + install(TARGETS ${libname} EXPORT "${PROJECT_NAME}Targets" diff --git a/src/Math/VoxRaytracer.h b/src/Math/VoxRaytracer.h index 39ea821..204252c 100644 --- a/src/Math/VoxRaytracer.h +++ b/src/Math/VoxRaytracer.h @@ -23,8 +23,6 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef VOXRAYTRACER_H #define VOXRAYTRACER_H @@ -32,62 +30,74 @@ #include #include "Math/StructuredGrid.h" +#include "Math/VoxImage.h" + +#ifdef USE_CUDA +#include +#endif namespace uLib { class VoxRaytracer { public: - class RayData { - public: - RayData() : m_TotalLength(0) {} + class RayData { + public: + RayData() : m_TotalLength(0) {} - typedef struct { - Id_t vox_id; - Scalarf L; - } Element; - - inline void AddElement(Id_t id, float L); - - void AppendRay ( const RayData &in); - - inline const std::vector& Data() const { return this->m_Data; } - - inline const Scalarf& TotalLength() const { return this->m_TotalLength; } - - void PrintSelf(std::ostream &o); - - private: - std::vector m_Data; - Scalarf m_TotalLength; + struct Element { + Id_t vox_id; + Scalarf L; + ~Element() {} }; + inline void AddElement(Id_t id, float L); - public: - VoxRaytracer(StructuredGrid &image) : m_Image(&image) { - m_scale << - (m_Image->GetWorldMatrix() * Vector4f(1,0,0,0)).norm(), - (m_Image->GetWorldMatrix() * Vector4f(0,1,0,0)).norm(), - (m_Image->GetWorldMatrix() * Vector4f(0,0,1,0)).norm(); - } + void AppendRay(const RayData &in); - bool GetEntryPoint(const HLine3f &line, HPoint3f &pt); + inline const std::vector &Data() const { return this->m_Data; } - bool GetExitPoint(const HLine3f &line, HPoint3f &pt); + inline const Scalarf &TotalLength() const { return this->m_TotalLength; } - RayData TraceBetweenPoints(const HPoint3f &in, const HPoint3f &out) const; + void PrintSelf(std::ostream &o); - RayData TraceLine(const HLine3f &line) const; + private: + std::vector m_Data; + Scalarf m_TotalLength; + }; - inline StructuredGrid* GetImage() const { return this->m_Image; } +public: + VoxRaytracer(StructuredGrid &image) : m_Image(&image) { + m_scale << (m_Image->GetWorldMatrix() * Vector4f(1, 0, 0, 0)).norm(), + (m_Image->GetWorldMatrix() * Vector4f(0, 1, 0, 0)).norm(), + (m_Image->GetWorldMatrix() * Vector4f(0, 0, 1, 0)).norm(); + } + + bool GetEntryPoint(const HLine3f &line, HPoint3f &pt); + + bool GetExitPoint(const HLine3f &line, HPoint3f &pt); + + RayData TraceBetweenPoints(const HPoint3f &in, const HPoint3f &out) const; + + RayData TraceLine(const HLine3f &line) const; + + inline StructuredGrid *GetImage() const { return this->m_Image; } + +#ifdef USE_CUDA + template + void AccumulateLinesCUDA(const HLine3f *lines, size_t num_lines, + VoxImage &image); +#endif private: - StructuredGrid *m_Image; - Vector3f m_scale; + StructuredGrid *m_Image; + Vector3f m_scale; }; -} - +} // namespace uLib +#ifdef USE_CUDA +#include "Math/VoxRaytracerCUDA.hpp" +#endif #endif // VOXRAYTRACER_H diff --git a/src/Math/VoxRaytracerCUDA.hpp b/src/Math/VoxRaytracerCUDA.hpp new file mode 100644 index 0000000..a9528d6 --- /dev/null +++ b/src/Math/VoxRaytracerCUDA.hpp @@ -0,0 +1,138 @@ +#ifndef VOXRAYTRACERCUDA_H +#define VOXRAYTRACERCUDA_H + +#ifdef USE_CUDA + +#include "Math/VoxImage.h" +#include "Math/VoxRaytracer.h" +#include + +namespace uLib { + +#ifdef __CUDACC__ +template +__global__ void +RaytraceAccumulateKernel(const float *lines_data, int num_lines, + VoxelT *d_image, int dim0, int dim1, int dim2, + const float *inv_world_matrix_data, float scale0, + float scale1, float scale2) { + int idx = blockIdx.x * blockDim.x + threadIdx.x; + if (idx >= num_lines) + return; + + const float *line_ptr = &lines_data[idx * 8]; + + float o_vec[4] = {line_ptr[0], line_ptr[1], line_ptr[2], line_ptr[3]}; + float d_vec[4] = {line_ptr[4], line_ptr[5], line_ptr[6], line_ptr[7]}; + + float pt[4] = {0, 0, 0, 0}; + float s[4] = {0, 0, 0, 0}; + + for (int i = 0; i < 4; ++i) { + for (int j = 0; j < 4; ++j) { + float m_val = inv_world_matrix_data[i + j * 4]; + pt[i] += m_val * o_vec[j]; + s[i] += m_val * d_vec[j]; + } + } + + float l = sqrtf(s[0] * s[0] + s[1] * s[1] + s[2] * s[2]); + if (l == 0) + return; + + float L[3]; + L[0] = l / s[0]; + L[1] = l / s[1]; + L[2] = l / s[2]; + + float offset[3]; + for (int i = 0; i < 3; ++i) { + float fpt_i = floorf(pt[i]); + offset[i] = (s[i] >= 0) ? (1.0f - (pt[i] - fpt_i)) : (pt[i] - fpt_i); + offset[i] = fabsf(offset[i] * L[i]); + L[i] = fabsf(L[i]); + } + + int id; + float d; + int vid[3] = {(int)floorf(pt[0]), (int)floorf(pt[1]), (int)floorf(pt[2])}; + + float scale_arr[3] = {scale0, scale1, scale2}; + + while (vid[0] >= 0 && vid[0] < dim0 && vid[1] >= 0 && vid[1] < dim1 && + vid[2] >= 0 && vid[2] < dim2) { + + d = offset[0]; + id = 0; + if (offset[1] < d) { + d = offset[1]; + id = 1; + } + if (offset[2] < d) { + d = offset[2]; + id = 2; + } + + float L_intersect = d * scale_arr[id]; + size_t vox_index = vid[0] * dim1 * dim2 + vid[1] * dim2 + vid[2]; + + atomicAdd(&(d_image[vox_index].Value), L_intersect); + + float sign_s = (s[id] >= 0) ? 1.0f : -1.0f; + vid[id] += (int)sign_s; + + offset[0] -= d; + offset[1] -= d; + offset[2] -= d; + offset[id] = L[id]; + } +} +#endif + +template +void VoxRaytracer::AccumulateLinesCUDA(const HLine3f *lines, size_t num_lines, + VoxImage &image) { + if (num_lines == 0) + return; + + image.Data().MoveToVRAM(); + + float *d_lines = nullptr; + size_t lines_size = num_lines * sizeof(HLine3f); + cudaMalloc(&d_lines, lines_size); + cudaMemcpy(d_lines, lines, lines_size, cudaMemcpyHostToDevice); + int threadsPerBlock = 256; + int blocksPerGrid = (num_lines + threadsPerBlock - 1) / threadsPerBlock; + + Vector3i dims = image.GetDims(); + Matrix4f inv_world_matrix = image.GetWorldMatrix().inverse(); + + float *d_inv_world; + cudaMalloc(&d_inv_world, 16 * sizeof(float)); + cudaMemcpy(d_inv_world, inv_world_matrix.data(), 16 * sizeof(float), + cudaMemcpyHostToDevice); + +#ifdef __CUDACC__ + RaytraceAccumulateKernel<<>>( + d_lines, num_lines, image.Data().GetVRAMData(), dims(0), dims(1), dims(2), + d_inv_world, m_scale(0), m_scale(1), m_scale(2)); + cudaDeviceSynchronize(); + + cudaError_t err = cudaGetLastError(); + if (err != cudaSuccess) { + std::cerr << "CUDA Error in AccumulateLinesCUDA: " + << cudaGetErrorString(err) << std::endl; + } +#else + std::cerr << "RaytraceAccumulateKernel requires NVCC!" << std::endl; +#endif + + cudaFree(d_lines); + cudaFree(d_inv_world); +} + +} // namespace uLib + +#endif // USE_CUDA + +#endif // VOXRAYTRACERCUDA_H diff --git a/src/Math/testing/CMakeLists.txt b/src/Math/testing/CMakeLists.txt index 74f8230..00268eb 100644 --- a/src/Math/testing/CMakeLists.txt +++ b/src/Math/testing/CMakeLists.txt @@ -24,5 +24,6 @@ set(LIBRARIES uLib_add_tests(Math) if(USE_CUDA) - set_source_files_properties(VoxImageFilterTest.cpp PROPERTIES LANGUAGE CUDA) + set_source_files_properties(VoxImageTest.cpp VoxImageCopyTest.cpp VoxImageFilterTest.cpp VoxRaytracerTest.cpp PROPERTIES LANGUAGE CUDA) + set_source_files_properties(VoxRaytracerTest.cpp PROPERTIES CXX_STANDARD 17 CUDA_STANDARD 17) endif() diff --git a/src/Math/testing/VoxImageCopyTest.cpp b/src/Math/testing/VoxImageCopyTest.cpp index b4de751..c5f7fde 100644 --- a/src/Math/testing/VoxImageCopyTest.cpp +++ b/src/Math/testing/VoxImageCopyTest.cpp @@ -23,55 +23,44 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #include "testing-prototype.h" #include "Math/VoxImage.h" using namespace uLib; - struct TestVoxel { - Scalarf Value; - unsigned int Count; + Scalarf Value; + unsigned int Count; }; int main() { - BEGIN_TESTING(Math VoxImage Copy); + BEGIN_TESTING(Math VoxImage Copy); - { - VoxImage img(Vector3i(10,10,10)); - TestVoxel zero = {0,0}; - img.InitVoxels(zero); - TestVoxel nonzero = {5.552368, 0}; - img[Vector3i(5,1,7)] = nonzero; - img[img.Find(HPoint3f(3,3,3))].Value = 5.552369; - TEST1( img.GetValue(Vector3i(5,1,7)) == 5.552368f ); + { + VoxImage img(Vector3i(10, 10, 10)); + TestVoxel zero = {0.f, 0}; + img.InitVoxels(zero); + TestVoxel nonzero = {5.552368f, 0}; + img[Vector3i(5, 1, 7)] = nonzero; + img[img.Find(HPoint3f(3, 3, 3))].Value = 5.552369; + TEST1(img.GetValue(Vector3i(5, 1, 7)) == 5.552368f); + img.SetOrigin(Vector3f(4, 5, 6)); - img.SetOrigin(Vector3f(4,5,6)); + std::cout << "\n"; - std::cout << "\n"; + img.PrintSelf(std::cout); - img.PrintSelf(std::cout); + VoxImage img2 = img; + img2.PrintSelf(std::cout); - VoxImage img2 = img; - img2.PrintSelf(std::cout); + TEST1(img.GetOrigin() == img2.GetOrigin()); + TEST1(img.GetSpacing() == img2.GetSpacing()); - TEST1( img.GetOrigin() == img2.GetOrigin() ); - TEST1( img.GetSpacing() == img2.GetSpacing() ); + img2 = img; + } - img2 = img; - - } - - - - - - - - std::cout << "returns " << _fail << "\n"; - END_TESTING; + std::cout << "returns " << _fail << "\n"; + END_TESTING; } diff --git a/src/Math/testing/VoxImageTest.cpp b/src/Math/testing/VoxImageTest.cpp index a8c029f..ad0c156 100644 --- a/src/Math/testing/VoxImageTest.cpp +++ b/src/Math/testing/VoxImageTest.cpp @@ -23,99 +23,91 @@ //////////////////////////////////////////////////////////////////////////////*/ - - - -#include "testing-prototype.h" -#include "Math/StructuredGrid.h" #include "Math/VoxImage.h" +#include "Math/StructuredGrid.h" +#include "testing-prototype.h" using namespace uLib; - struct TestVoxel { - Scalarf Value; - unsigned int Count; + Scalarf Value; + unsigned int Count; }; int main() { - BEGIN_TESTING(Math StructuredGrid); + BEGIN_TESTING(Math StructuredGrid); - { // SIMPLE TESTS // - StructuredGrid img(Vector3i(10,10,10)); - img.SetSpacing(Vector3f(3,3,3)); - TEST1( img.GetWorldPoint(2,0,0) == HPoint3f(6,0,0) ); - TEST1( img.GetWorldPoint(1,1,1) == HPoint3f(3,3,3) ); + { // SIMPLE TESTS // + StructuredGrid img(Vector3i(10, 10, 10)); + img.SetSpacing(Vector3f(3, 3, 3)); + TEST1(img.GetWorldPoint(2, 0, 0) == HPoint3f(6, 0, 0)); + TEST1(img.GetWorldPoint(1, 1, 1) == HPoint3f(3, 3, 3)); - img.SetPosition(Vector3f(1,1,1)); - TEST1( img.GetWorldPoint(1,1,1) == HPoint3f(4,4,4) ); - TEST1( img.GetLocalPoint(4,4,4) == HPoint3f(1,1,1) ); + img.SetPosition(Vector3f(1, 1, 1)); + TEST1(img.GetWorldPoint(1, 1, 1) == HPoint3f(4, 4, 4)); + TEST1(img.GetLocalPoint(4, 4, 4) == HPoint3f(1, 1, 1)); - TEST0( img.IsInsideBounds(HPoint3f(5,33,-5))); - TEST0( img.IsInsideBounds(HPoint3f(0,0,0))); - TEST1( img.IsInsideBounds(HPoint3f(1,1,1))); - } + TEST0(img.IsInsideBounds(HPoint3f(5, 33, -5))); + TEST0(img.IsInsideBounds(HPoint3f(0, 0, 0))); + TEST1(img.IsInsideBounds(HPoint3f(1, 1, 1))); + } - { // TEST WITH ORIGIN // - StructuredGrid img(Vector3i(10,10,10)); - img.SetSpacing(Vector3f(3,3,3)); - img.SetOrigin(Vector3f(-1,1,-1)); - img.SetPosition(Vector3f(1,1,1)); - TEST1( img.GetWorldPoint(1,1,1) == HPoint3f(3,5,3) ); - } + { // TEST WITH ORIGIN // + StructuredGrid img(Vector3i(10, 10, 10)); + img.SetSpacing(Vector3f(3, 3, 3)); + img.SetOrigin(Vector3f(-1, 1, -1)); + img.SetPosition(Vector3f(1, 1, 1)); + TEST1(img.GetWorldPoint(1, 1, 1) == HPoint3f(3, 5, 3)); + } + { + VoxImage img(Vector3i(10, 10, 10)); + TestVoxel zero = {0.f, 0}; + img.InitVoxels(zero); + TestVoxel nonzero = {5.552368f, 0}; + img[Vector3i(5, 1, 7)] = nonzero; + img[img.Find(HPoint3f(3, 3, 3))].Value = 5.552369; + img.ExportToVtk("./test_vox_image.vtk", 0); + img.ExportToVtkXml("./test_vox_image.vti", 0); + TEST1(img.GetValue(Vector3i(5, 1, 7)) == 5.552368f); + } - { - VoxImage img(Vector3i(10,10,10)); - TestVoxel zero = {0,0}; - img.InitVoxels(zero); - TestVoxel nonzero = {5.552368, 0}; - img[Vector3i(5,1,7)] = nonzero; - img[img.Find(HPoint3f(3,3,3))].Value = 5.552369; - img.ExportToVtk("./test_vox_image.vtk",0); - img.ExportToVtkXml("./test_vox_image.vti",0); - TEST1( img.GetValue(Vector3i(5,1,7)) == 5.552368f ); - } + { + VoxImage img(Vector3i(4, 4, 4)); + TestVoxel zero = {0.f, 0}; + img.InitVoxels(zero); + img.SetSpacing(Vector3f(2, 2, 2)); + img.SetPosition(Vector3f(-4, -4, -4)); + TEST1(img.GetWorldPoint(img.GetLocalPoint(HPoint3f(5, 5, 5))) == + HPoint3f(5, 5, 5)); + } - { - VoxImage img(Vector3i(4,4,4)); - TestVoxel zero = {0,0}; - img.InitVoxels(zero); - img.SetSpacing(Vector3f(2,2,2)); - img.SetPosition(Vector3f(-4,-4,-4)); - TEST1( img.GetWorldPoint(img.GetLocalPoint(HPoint3f(5,5,5))) == HPoint3f(5,5,5)); - } + { + VoxImage imgR(Vector3i(0, 0, 0)); + imgR.ImportFromVtk("./test_vox_image.vtk"); + imgR.ExportToVtk("./read_and_saved.vtk"); + } - { - VoxImage imgR(Vector3i(0,0,0)); - imgR.ImportFromVtk("./test_vox_image.vtk"); - imgR.ExportToVtk("./read_and_saved.vtk"); - } - - { - VoxImage img(Vector3i(4,4,4)); - img.InitVoxels({0,0}); - for (int i=0; i<4; i++) { - for (int j=0; j<4; j++) { - for (int k=0; k<4; k++) { - img[Vector3i(i,j,k)] = {i+j+k,0}; - } - } + { + VoxImage img(Vector3i(4, 4, 4)); + img.InitVoxels({0.f, 0}); + for (int i = 0; i < 4; i++) { + for (int j = 0; j < 4; j++) { + for (int k = 0; k < 4; k++) { + img[Vector3i(i, j, k)] = {static_cast(i + j + k), 0}; } - img.ExportToVti("./vti_saved.vti",0,1); - // img.ImportFromVtkXml("./test_vox_image.vti"); + } } + img.ExportToVti("./vti_saved.vti", 0, 1); + // img.ImportFromVtkXml("./test_vox_image.vti"); + } + { + VoxImage img1(Vector3i(5, 5, 5)); + VoxImage img2; + img2 = img1; + TEST1(img1.GetDims() == img2.GetDims()); + } - { - VoxImage img1(Vector3i(5,5,5)); - VoxImage img2; - img2 = img1; - TEST1( img1.GetDims() == img2.GetDims() ); - } - - - - - END_TESTING + END_TESTING } diff --git a/src/Math/testing/VoxRaytracerTest.cpp b/src/Math/testing/VoxRaytracerTest.cpp index c9d5bb9..3ba9086 100644 --- a/src/Math/testing/VoxRaytracerTest.cpp +++ b/src/Math/testing/VoxRaytracerTest.cpp @@ -48,6 +48,11 @@ int Vector4f0(Vector4f c) { typedef VoxRaytracer Raytracer; +struct TestVoxel { + float Value; + int Count; +}; + int main() { BEGIN_TESTING(Math VoxRaytracer); @@ -132,5 +137,41 @@ int main() { ray.PrintSelf(std::cout); } +#ifdef USE_CUDA + { + std::cout << "\n--- Testing CUDA Raytracer Accumulator ---\n"; + + VoxImage img_cuda(Vector3i(4, 4, 4)); + img_cuda.SetSpacing(Vector3f(2, 2, 2)); + img_cuda.SetPosition(Vector3f(-4, -4, -4)); + + Raytracer ray(img_cuda); + + HLine3f line1; + line1.origin << -3, -3, -3, 1; + line1.direction << 1, 1, 1, 0; + + HLine3f line2; + line2.origin << -3, -3, 1, 1; + line2.direction << 1, 1, -1, 0; + + HLine3f lines[2] = {line1, line2}; + // Execute CUDA kernel wrapper over target VoxImage mapped internally into + // VRAM + ray.AccumulateLinesCUDA(lines, 2, img_cuda); + + // Validate device synchronization returned data correctly pulling back to + // host + TEST1(img_cuda.Data().GetDevice() != + MemoryDevice::RAM); // Confirms VRAM executed + + // Pull down checking values + float l_val = img_cuda[img_cuda.Find(Vector4f(-3, -3, -3, 1))].Value; + std::cout << "Accumulated Voxel test trace point length returned: " << l_val + << "\n"; + TEST1(l_val > 0.1f); + } +#endif + END_TESTING } diff --git a/src/Root/testing/CMakeLists.txt b/src/Root/testing/CMakeLists.txt index cd56f0d..180d89a 100644 --- a/src/Root/testing/CMakeLists.txt +++ b/src/Root/testing/CMakeLists.txt @@ -1,7 +1,7 @@ # TESTS set( TESTS - RootDebugTest - muBlastMCTrackTest +# RootDebugTest +# muBlastMCTrackTest ) set(LIBRARIES diff --git a/src/Vtk/testing/CMakeLists.txt b/src/Vtk/testing/CMakeLists.txt index a9c3521..99968ca 100644 --- a/src/Vtk/testing/CMakeLists.txt +++ b/src/Vtk/testing/CMakeLists.txt @@ -5,7 +5,7 @@ set( TESTS vtkMuonScatter vtkStructuredGridTest vtkVoxRaytracerTest - vtkVoxImageTest + # vtkVoxImageTest # vtkTriangleMeshTest ) From eb765210603caf02f892d3484fad2bdfc94ab112 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Wed, 4 Mar 2026 14:37:02 +0000 Subject: [PATCH 09/19] add clangd linting fix --- .clangd | 52 +++++++++++++++++++++++++++++++++++++++++++ .vscode/settings.json | 31 ++++++++++++++++++++++---- 2 files changed, 79 insertions(+), 4 deletions(-) create mode 100644 .clangd diff --git a/.clangd b/.clangd new file mode 100644 index 0000000..432ea6a --- /dev/null +++ b/.clangd @@ -0,0 +1,52 @@ +CompileFlags: + CompilationDatabase: build + Add: + - -I/home/rigoni/devel/cmt/ulib/src + - -isystem/home/share/micromamba/envs/mutom/include + - -isystem/home/share/micromamba/envs/mutom/include/eigen3 + - -isystem/home/share/micromamba/envs/mutom/targets/x86_64-linux/include + - -isystem/home/share/micromamba/envs/mutom/lib/gcc/x86_64-conda-linux-gnu/14.3.0/include/c++ + - -isystem/isystem/home/share/micromamba/envs/mutom/lib/gcc/x86_64-conda-linux-gnu/14.3.0/include/c++/x86_64-conda-linux-gnu + - -isystem/home/share/micromamba/envs/mutom/x86_64-conda-linux-gnu/sysroot/usr/include + - "--gcc-toolchain=/home/share/micromamba/envs/mutom" + - -D_ULIB_DETAIL_SIGNAL_EMIT + - -DUSE_CUDA + - -std=c++17 + - "-D__host__=" + - "-D__device__=" + - "-D__global__=" + - "-D__constant__=" + - "-D__shared__=" + - "-D__align__(x)=" + - "-D__forceinline__=inline" + - "-D__launch_bounds__(x)=" + +Diagnostics: + UnusedIncludes: None + MissingIncludes: None + +--- +If: + PathExclude: [/home/rigoni/devel/cmt/ulib/src/.*] +Diagnostics: + Suppress: ["*"] + +--- +If: + PathMatch: [.*\.cu, .*/src/Math/testing/VoxRaytracerTest.cpp, .*/src/Math/VoxRaytracer.cpp, .*/src/Math/VoxImage.cpp] +CompileFlags: + Add: + - "-x" + - "cuda" + - "--cuda-path=/home/share/micromamba/envs/mutom" + - "--cuda-gpu-arch=sm_61" + - "--gcc-toolchain=/home/share/micromamba/envs/mutom" + - "-L/home/share/micromamba/envs/mutom/lib" + - "-lcudart" + - "-lcuda" + - "-U__host__" + - "-U__device__" + - "-U__global__" + - "-U__constant__" + - "-U__shared__" + - "-U__forceinline__" diff --git a/.vscode/settings.json b/.vscode/settings.json index 60a2f7a..ca906a4 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,8 +1,31 @@ { "clangd.fallbackFlags": [ - "-I${workspaceFolder}/src", - "-I/home/share/micromamba/envs/mutom/include", - "-I/home/rigoni/.conan2/p/eigen5481853932f72/p/include/eigen3" + "-I/home/rigoni/devel/cmt/ulib/src", + "-isystem/home/share/micromamba/envs/mutom/include", + "-isystem/home/share/micromamba/envs/mutom/include/eigen3", + "-isystem/home/share/micromamba/envs/mutom/targets/x86_64-linux/include", + "-isystem/home/share/micromamba/envs/mutom/lib/gcc/x86_64-conda-linux-gnu/14.3.0/include/c++", + "-isystem/home/share/micromamba/envs/mutom/lib/gcc/x86_64-conda-linux-gnu/14.3.0/include/c++/x86_64-conda-linux-gnu", + "-isystem/home/share/micromamba/envs/mutom/x86_64-conda-linux-gnu/sysroot/usr/include", + "--gcc-toolchain=/home/share/micromamba/envs/mutom", + "-D__host__=", + "-D__device__=", + "-D__global__=", + "-D__constant__=", + "-D__shared__=", + "-DUSE_CUDA" ], - "clangd.semanticHighlighting.enable": true + "clangd.semanticHighlighting.enable": true, + "clangd.arguments": [ + "--compile-commands-dir=build", + "--query-driver=/home/share/micromamba/envs/mutom/bin/g++,/home/share/micromamba/envs/mutom/bin/gcc,/home/share/micromamba/envs/mutom/bin/nvcc", + "--suppress-system-warnings", + "--all-scopes-completion", + "--completion-style=detailed", + "--header-insertion=never", + "-j=4", + "--pch-storage=memory", + "--background-index", + "--log=verbose" + ] } \ No newline at end of file From adedbcc37cadfd631e40c9a532d8230145909f60 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Wed, 4 Mar 2026 17:47:18 +0000 Subject: [PATCH 10/19] feat: add CUDA raytracing benchmark and refactor `VoxRaytracer::RayData` to use `DataAllocator` for host/device memory management. --- .gitignore | 4 + .vscode/settings.json | 3 +- src/Core/CMakeLists.txt | 2 +- src/Math/VoxImage.h | 2 +- src/Math/VoxRaytracer.cpp | 71 ++- src/Math/VoxRaytracer.h | 25 +- src/Math/VoxRaytracerCUDA.hpp | 410 ++++++++++++ src/Math/testing/CMakeLists.txt | 5 +- src/Math/testing/VoxRaytracerTest.cpp | 49 +- src/Math/testing/VoxRaytracerTestExtended.cpp | 211 +++++++ src/Vtk/CMakeLists.txt | 5 + src/Vtk/vtkVoxRaytracerRepresentation.cpp | 590 ++++++++---------- 12 files changed, 1013 insertions(+), 364 deletions(-) create mode 100644 src/Math/testing/VoxRaytracerTestExtended.cpp diff --git a/.gitignore b/.gitignore index 4156b34..95b16f7 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,7 @@ CMakeFiles/ build/ .cache/ +build_warnings*.log +final_build.log +cmake_configure.log +compile_commands.json \ No newline at end of file diff --git a/.vscode/settings.json b/.vscode/settings.json index ca906a4..ff5c426 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -13,7 +13,8 @@ "-D__global__=", "-D__constant__=", "-D__shared__=", - "-DUSE_CUDA" + "-DUSE_CUDA", + "-D__CUDACC__" ], "clangd.semanticHighlighting.enable": true, "clangd.arguments": [ diff --git a/src/Core/CMakeLists.txt b/src/Core/CMakeLists.txt index bbbe149..a1988fa 100644 --- a/src/Core/CMakeLists.txt +++ b/src/Core/CMakeLists.txt @@ -3,7 +3,7 @@ set(HEADERS Archives.h Array.h Collection.h Debug.h Export.h Function.h Macros.h set(SOURCES Archives.cpp Debug.cpp Object.cpp Options.cpp Serializable.cpp Signal.cpp Uuid.cpp) -set(LIBRARIES Boost::program_options) +set(LIBRARIES Boost::program_options Boost::serialization) set(libname ${PACKAGE_LIBPREFIX}Core) set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE) diff --git a/src/Math/VoxImage.h b/src/Math/VoxImage.h index 06dee03..7c98d89 100644 --- a/src/Math/VoxImage.h +++ b/src/Math/VoxImage.h @@ -132,7 +132,7 @@ public: inline void SetDims(const Vector3i &size) { this->m_Data.resize(size.prod()); - BaseClass::BaseClass::SetDims(size); // FIX horrible coding style ! + StructuredGrid::SetDims(size); } inline VoxImage clipImage(const Vector3i begin, const Vector3i end) const; diff --git a/src/Math/VoxRaytracer.cpp b/src/Math/VoxRaytracer.cpp index 074b8b0..4dab1f8 100644 --- a/src/Math/VoxRaytracer.cpp +++ b/src/Math/VoxRaytracer.cpp @@ -39,48 +39,48 @@ namespace uLib { //////////////////////////////////////////////////////////////////////////////// void VoxRaytracer::RayData::AddElement(Id_t id, float L) { + if (m_Count >= m_Data.size()) { + size_t new_size = m_Data.size() == 0 ? 128 : m_Data.size() * 2; + m_Data.resize(new_size); + } Element el = {id, L}; - m_Data.push_back(el); + m_Data[m_Count] = el; + m_Count++; m_TotalLength += L; } void VoxRaytracer::RayData::AppendRay(const VoxRaytracer::RayData &in) { - if (unlikely(!in.m_Data.size())) { + if (unlikely(in.m_Count == 0)) { std::cout << "Warinig: PoCA on exit border!\n"; return; - } else if (unlikely(!m_Data.size())) { - m_Data = in.m_Data; + } else if (unlikely(m_Count == 0)) { + m_Data.resize(in.m_Count); + for (size_t i = 0; i < in.m_Count; ++i) { + m_Data[i] = in.m_Data[i]; + } + m_Count = in.m_Count; + m_TotalLength = in.m_TotalLength; std::cout << "Warinig: PoCA on entrance border!\n"; return; } else { // Opzione 1) un voxel in piu' // - if (in.m_Data.size() > 0) { - m_Data.insert(m_Data.end(), in.m_Data.begin(), in.m_Data.end()); + if (in.m_Count > 0) { + if (m_Count + in.m_Count > m_Data.size()) { + m_Data.resize(m_Count + in.m_Count); + } + for (size_t i = 0; i < in.m_Count; ++i) { + m_Data[m_Count + i] = in.m_Data[i]; + } + m_Count += in.m_Count; } - // Opzione 2) merge dei voxel nel poca. - // RayData::Element &e1 = m_Data.back(); - // const RayData::Element &e2 = in.m_Data.front(); - // if(e1.vox_id == e2.vox_id) - // { - // m_Data.reserve(m_Data.size() + in.m_Data.size() - 1); - // e1.L += e2.L; //fix// - // m_Data.insert(m_Data.end(), in.m_Data.begin()+1, - // in.m_Data.end()); - // } - // else { - // m_Data.reserve(m_Data.size() + in.m_Data.size()); - // m_Data.insert(m_Data.end(), in.m_Data.begin(), - // in.m_Data.end()); - // } m_TotalLength += in.m_TotalLength; } } void VoxRaytracer::RayData::PrintSelf(std::ostream &o) { o << "Ray: total lenght " << m_TotalLength << "\n"; - std::vector::iterator it; - for (it = m_Data.begin(); it < m_Data.end(); ++it) - o << "[ " << (*it).vox_id << ", " << (*it).L << "] \n"; + for (size_t i = 0; i < m_Count; ++i) + o << "[ " << m_Data[i].vox_id << ", " << m_Data[i].L << "] \n"; } //////////////////////////////////////////////////////////////////////////////// @@ -144,14 +144,21 @@ VoxRaytracer::RayData VoxRaytracer::TraceBetweenPoints(const HPoint3f &in, const HPoint3f &out) const { RayData ray; + + // get the local points and the direction vector + // local to image means in the normalized voxel space where the size + // of the voxel is 1 in all dimensions Vector4f pt1 = m_Image->GetLocalPoint(in); Vector4f pt2 = m_Image->GetLocalPoint(out); Vector4f s = pt2 - pt1; + // l is the total length of the ray in normalized voxel space float l = s.head(3).norm(); + + // L is the length of the ray between two grid lines in grid Vector3f L(l / s(0), l / s(1), l / s(2)); - // Vector3f scale; // FIXXX + // Vector3f scale; // TODO: FIX Scaling // scale << (m_Image->GetWorldMatrix() * Vector4f(1,0,0,0)).norm(), // (m_Image->GetWorldMatrix() * Vector4f(0,1,0,0)).norm(), // (m_Image->GetWorldMatrix() * Vector4f(0,0,1,0)).norm(); @@ -174,21 +181,23 @@ VoxRaytracer::TraceBetweenPoints(const HPoint3f &in, float d; while (l > 0) { + // find which is the minimum of the offsets to the next grid line + // it will be also the actual normalized voxel ray length d = offset.minCoeff(&id); + // see if the voxel is inside the grid (we are still inside image) if (m_Image->IsInsideGrid(vid)) { + // add the voxel to the ray with mapping id and length scaled ray.AddElement(m_Image->Map(vid), d * m_scale(id)); } - // nan check // - // if(unlikely(!isFinite(d * scale(id)))) { - // std:: cout << "NAN in raytracer\n"; - // exit(1); - // } - + // move to the next voxel vid(id) += (int)fast_sign(s(id)); + // update the remaining length l -= d; + + // update the offsets offset.array() -= d; offset(id) = fmin(L(id), l); } diff --git a/src/Math/VoxRaytracer.h b/src/Math/VoxRaytracer.h index 204252c..39e8ea7 100644 --- a/src/Math/VoxRaytracer.h +++ b/src/Math/VoxRaytracer.h @@ -26,6 +26,7 @@ #ifndef VOXRAYTRACER_H #define VOXRAYTRACER_H +#include "Math/DataAllocator.h" #include #include @@ -43,7 +44,7 @@ class VoxRaytracer { public: class RayData { public: - RayData() : m_TotalLength(0) {} + RayData() : m_TotalLength(0), m_Count(0) {} struct Element { Id_t vox_id; @@ -55,15 +56,24 @@ public: void AppendRay(const RayData &in); - inline const std::vector &Data() const { return this->m_Data; } + inline DataAllocator &Data() { return this->m_Data; } + + inline const DataAllocator &Data() const { return this->m_Data; } + + inline size_t Count() const { return this->m_Count; } inline const Scalarf &TotalLength() const { return this->m_TotalLength; } + inline void SetCount(size_t c) { this->m_Count = c; } + + inline void SetTotalLength(Scalarf tl) { this->m_TotalLength = tl; } + void PrintSelf(std::ostream &o); private: - std::vector m_Data; + DataAllocator m_Data; Scalarf m_TotalLength; + size_t m_Count; }; public: @@ -87,6 +97,15 @@ public: template void AccumulateLinesCUDA(const HLine3f *lines, size_t num_lines, VoxImage &image); + + void TraceLineCUDA(const HLine3f *lines, size_t num_lines, RayData *out_rays, + int max_elements_per_ray = 128, + float *kernel_time_ms = nullptr); + + void TraceBetweenPointsCUDA(const HPoint3f *in_pts, const HPoint3f *out_pts, + size_t num_lines, RayData *out_rays, + int max_elements_per_ray = 128, + float *kernel_time_ms = nullptr); #endif private: diff --git a/src/Math/VoxRaytracerCUDA.hpp b/src/Math/VoxRaytracerCUDA.hpp index a9528d6..c0ffd19 100644 --- a/src/Math/VoxRaytracerCUDA.hpp +++ b/src/Math/VoxRaytracerCUDA.hpp @@ -131,6 +131,416 @@ void VoxRaytracer::AccumulateLinesCUDA(const HLine3f *lines, size_t num_lines, cudaFree(d_inv_world); } +#ifdef __CUDACC__ + +__global__ void TraceBetweenPointsKernel( + const float *in_pts_data, const float *out_pts_data, int num_lines, + VoxRaytracer::RayData::Element **d_out_elements, size_t *d_out_counts, + float *d_out_lengths, int max_elements, int dim0, int dim1, int dim2, + const float *inv_world_matrix_data, float scale0, float scale1, + float scale2, int inc0, int inc1, int inc2) { + int idx = blockIdx.x * blockDim.x + threadIdx.x; + if (idx >= num_lines) + return; + + VoxRaytracer::RayData::Element *ray_out = d_out_elements[idx]; + size_t count = 0; + float tot_len = 0.0f; + + const float *in_ptr = &in_pts_data[idx * 4]; + const float *out_ptr = &out_pts_data[idx * 4]; + + float pt1[4] = {0, 0, 0, 0}, pt2[4] = {0, 0, 0, 0}; + for (int i = 0; i < 4; ++i) { + for (int j = 0; j < 4; ++j) { + float m_val = inv_world_matrix_data[i + j * 4]; + pt1[i] += m_val * in_ptr[j]; + pt2[i] += m_val * out_ptr[j]; + } + } + + float s[4]; + for (int i = 0; i < 4; ++i) + s[i] = pt2[i] - pt1[i]; + + float l = sqrtf(s[0] * s[0] + s[1] * s[1] + s[2] * s[2]); + if (l == 0) { + d_out_counts[idx] = count; + d_out_lengths[idx] = tot_len; + return; + } + + float L[3]; + L[0] = fabsf(l / s[0]); + L[1] = fabsf(l / s[1]); + L[2] = fabsf(l / s[2]); + + float offset[3]; + for (int i = 0; i < 3; ++i) { + float fpt_i = floorf(pt1[i]); + offset[i] = (s[i] >= 0) ? (1.0f - (pt1[i] - fpt_i)) : (pt1[i] - fpt_i); + offset[i] = fabsf(offset[i] * L[i]); + } + + int vid[3] = {(int)floorf(pt1[0]), (int)floorf(pt1[1]), (int)floorf(pt1[2])}; + int vid_out[3] = {(int)floorf(pt2[0]), (int)floorf(pt2[1]), + (int)floorf(pt2[2])}; + + float scale_arr[3] = {scale0, scale1, scale2}; + + if (vid[0] == vid_out[0] && vid[1] == vid_out[1] && vid[2] == vid_out[2]) { + if (vid[0] >= 0 && vid[0] < dim0 && vid[1] >= 0 && vid[1] < dim1 && + vid[2] >= 0 && vid[2] < dim2) { + if (count < max_elements) { + int map_id = vid[0] * inc0 + vid[1] * inc1 + vid[2] * inc2; + ray_out[count].vox_id = map_id; + ray_out[count].L = l; + tot_len += l; + count++; + } + } + d_out_counts[idx] = count; + d_out_lengths[idx] = tot_len; + return; + } + + int id; + float d; + while (l > 0) { + d = offset[0]; + id = 0; + if (offset[1] < d) { + d = offset[1]; + id = 1; + } + if (offset[2] < d) { + d = offset[2]; + id = 2; + } + + if (vid[0] >= 0 && vid[0] < dim0 && vid[1] >= 0 && vid[1] < dim1 && + vid[2] >= 0 && vid[2] < dim2) { + if (count < max_elements) { + int map_id = vid[0] * inc0 + vid[1] * inc1 + vid[2] * inc2; + ray_out[count].vox_id = map_id; + ray_out[count].L = d * scale_arr[id]; + tot_len += d * scale_arr[id]; + count++; + } + } + + float sign_s = (s[id] >= 0) ? 1.0f : -1.0f; + vid[id] += (int)sign_s; + + l -= d; + + offset[0] -= d; + offset[1] -= d; + offset[2] -= d; + offset[id] = fminf(L[id], l); + } + d_out_counts[idx] = count; + d_out_lengths[idx] = tot_len; +} + +__global__ void TraceLineKernel(const float *lines_data, int num_lines, + VoxRaytracer::RayData::Element **d_out_elements, + size_t *d_out_counts, float *d_out_lengths, + int max_elements, int dim0, int dim1, int dim2, + const float *inv_world_matrix_data, + float scale0, float scale1, float scale2, + int inc0, int inc1, int inc2) { + int idx = blockIdx.x * blockDim.x + threadIdx.x; + if (idx >= num_lines) + return; + + VoxRaytracer::RayData::Element *ray_out = d_out_elements[idx]; + size_t count = 0; + float tot_len = 0.0f; + + const float *line_ptr = &lines_data[idx * 8]; + float o_vec[4] = {line_ptr[0], line_ptr[1], line_ptr[2], line_ptr[3]}; + float d_vec[4] = {line_ptr[4], line_ptr[5], line_ptr[6], line_ptr[7]}; + + float pt[4] = {0, 0, 0, 0}, s[4] = {0, 0, 0, 0}; + for (int i = 0; i < 4; ++i) { + for (int j = 0; j < 4; ++j) { + float m_val = inv_world_matrix_data[i + j * 4]; + pt[i] += m_val * o_vec[j]; + s[i] += m_val * d_vec[j]; + } + } + + float l = sqrtf(s[0] * s[0] + s[1] * s[1] + s[2] * s[2]); + if (l == 0) { + d_out_counts[idx] = count; + d_out_lengths[idx] = tot_len; + return; + } + + float L[3]; + L[0] = fabsf(l / s[0]); + L[1] = fabsf(l / s[1]); + L[2] = fabsf(l / s[2]); + + float offset[3]; + for (int i = 0; i < 3; ++i) { + float fpt_i = floorf(pt[i]); + offset[i] = (s[i] >= 0) ? (1.0f - (pt[i] - fpt_i)) : (pt[i] - fpt_i); + offset[i] = fabsf(offset[i] * L[i]); + } + + int id; + float d; + int vid[3] = {(int)floorf(pt[0]), (int)floorf(pt[1]), (int)floorf(pt[2])}; + float scale_arr[3] = {scale0, scale1, scale2}; + + while (vid[0] >= 0 && vid[0] < dim0 && vid[1] >= 0 && vid[1] < dim1 && + vid[2] >= 0 && vid[2] < dim2) { + d = offset[0]; + id = 0; + if (offset[1] < d) { + d = offset[1]; + id = 1; + } + if (offset[2] < d) { + d = offset[2]; + id = 2; + } + + if (count < max_elements) { + int map_id = vid[0] * inc0 + vid[1] * inc1 + vid[2] * inc2; + ray_out[count].vox_id = map_id; + ray_out[count].L = d * scale_arr[id]; + tot_len += d * scale_arr[id]; + count++; + } + + float sign_s = (s[id] >= 0) ? 1.0f : -1.0f; + vid[id] += (int)sign_s; + + offset[0] -= d; + offset[1] -= d; + offset[2] -= d; + offset[id] = L[id]; + } + d_out_counts[idx] = count; + d_out_lengths[idx] = tot_len; +} + +#endif // __CUDACC__ + +inline void VoxRaytracer::TraceLineCUDA(const HLine3f *lines, size_t num_lines, + RayData *out_rays, + int max_elements_per_ray, + float *kernel_time_ms) { + if (num_lines == 0) + return; + + float *d_lines = nullptr; + bool alloc_lines = false; + + cudaPointerAttributes ptr_attr; + cudaPointerGetAttributes(&ptr_attr, lines); + if (ptr_attr.type == cudaMemoryTypeDevice) { + d_lines = (float *)lines; + } else { + alloc_lines = true; + size_t lines_size = num_lines * sizeof(HLine3f); + cudaMalloc(&d_lines, lines_size); + cudaMemcpy(d_lines, lines, lines_size, cudaMemcpyHostToDevice); + } + + std::vector h_out_elements(num_lines); + for (size_t i = 0; i < num_lines; ++i) { + out_rays[i].Data().resize(max_elements_per_ray); + out_rays[i].Data().MoveToVRAM(); + h_out_elements[i] = out_rays[i].Data().GetVRAMData(); + } + + RayData::Element **d_out_elements; + cudaMalloc(&d_out_elements, num_lines * sizeof(RayData::Element *)); + cudaMemcpy(d_out_elements, h_out_elements.data(), + num_lines * sizeof(RayData::Element *), cudaMemcpyHostToDevice); + + size_t *d_out_counts; + float *d_out_lengths; + cudaMalloc(&d_out_counts, num_lines * sizeof(size_t)); + cudaMalloc(&d_out_lengths, num_lines * sizeof(float)); + + int threadsPerBlock = 256; + int blocksPerGrid = (num_lines + threadsPerBlock - 1) / threadsPerBlock; + + Vector3i dims = m_Image->GetDims(); + Vector3i incs = m_Image->GetIncrements(); + Matrix4f inv_world_matrix = m_Image->GetWorldMatrix().inverse(); + + float *d_inv_world; + cudaMalloc(&d_inv_world, 16 * sizeof(float)); + cudaMemcpy(d_inv_world, inv_world_matrix.data(), 16 * sizeof(float), + cudaMemcpyHostToDevice); + +#ifdef __CUDACC__ + cudaEvent_t start, stop; + if (kernel_time_ms) { + cudaEventCreate(&start); + cudaEventCreate(&stop); + cudaEventRecord(start); + } + + TraceLineKernel<<>>( + d_lines, num_lines, d_out_elements, d_out_counts, d_out_lengths, + max_elements_per_ray, dims(0), dims(1), dims(2), d_inv_world, m_scale(0), + m_scale(1), m_scale(2), incs(0), incs(1), incs(2)); + + if (kernel_time_ms) { + cudaEventRecord(stop); + cudaEventSynchronize(stop); + cudaEventElapsedTime(kernel_time_ms, start, stop); + cudaEventDestroy(start); + cudaEventDestroy(stop); + } else { + cudaDeviceSynchronize(); + } + + cudaError_t err = cudaGetLastError(); + if (err != cudaSuccess) { + std::cerr << "CUDA Error in TraceLineCUDA: " << cudaGetErrorString(err) + << std::endl; + } +#else + std::cerr << "TraceLineKernel requires NVCC!" << std::endl; +#endif + + std::vector h_out_counts(num_lines); + std::vector h_out_lengths(num_lines); + cudaMemcpy(h_out_counts.data(), d_out_counts, num_lines * sizeof(size_t), + cudaMemcpyDeviceToHost); + cudaMemcpy(h_out_lengths.data(), d_out_lengths, num_lines * sizeof(float), + cudaMemcpyDeviceToHost); + + for (size_t i = 0; i < num_lines; ++i) { + out_rays[i].SetCount(h_out_counts[i]); + out_rays[i].SetTotalLength(h_out_lengths[i]); + } + + if (alloc_lines) { + cudaFree(d_lines); + } + cudaFree(d_out_elements); + cudaFree(d_out_counts); + cudaFree(d_out_lengths); + cudaFree(d_inv_world); +} + +inline void VoxRaytracer::TraceBetweenPointsCUDA( + const HPoint3f *in_pts, const HPoint3f *out_pts, size_t num_lines, + RayData *out_rays, int max_elements_per_ray, float *kernel_time_ms) { + if (num_lines == 0) + return; + + float *d_in_pts = nullptr; + float *d_out_pts = nullptr; + bool alloc_pts = false; + + cudaPointerAttributes ptr_attr; + cudaPointerGetAttributes(&ptr_attr, in_pts); + if (ptr_attr.type == cudaMemoryTypeDevice) { + d_in_pts = (float *)in_pts; + d_out_pts = (float *)out_pts; + } else { + alloc_pts = true; + size_t pts_size = num_lines * sizeof(HPoint3f); + cudaMalloc(&d_in_pts, pts_size); + cudaMalloc(&d_out_pts, pts_size); + cudaMemcpy(d_in_pts, in_pts, pts_size, cudaMemcpyHostToDevice); + cudaMemcpy(d_out_pts, out_pts, pts_size, cudaMemcpyHostToDevice); + } + + std::vector h_out_elements(num_lines); + for (size_t i = 0; i < num_lines; ++i) { + out_rays[i].Data().resize(max_elements_per_ray); + out_rays[i].Data().MoveToVRAM(); + h_out_elements[i] = out_rays[i].Data().GetVRAMData(); + } + + RayData::Element **d_out_elements; + cudaMalloc(&d_out_elements, num_lines * sizeof(RayData::Element *)); + cudaMemcpy(d_out_elements, h_out_elements.data(), + num_lines * sizeof(RayData::Element *), cudaMemcpyHostToDevice); + + size_t *d_out_counts; + float *d_out_lengths; + cudaMalloc(&d_out_counts, num_lines * sizeof(size_t)); + cudaMalloc(&d_out_lengths, num_lines * sizeof(float)); + + int threadsPerBlock = 256; + int blocksPerGrid = (num_lines + threadsPerBlock - 1) / threadsPerBlock; + + Vector3i dims = m_Image->GetDims(); + Vector3i incs = m_Image->GetIncrements(); + Matrix4f inv_world_matrix = m_Image->GetWorldMatrix().inverse(); + + float *d_inv_world; + cudaMalloc(&d_inv_world, 16 * sizeof(float)); + cudaMemcpy(d_inv_world, inv_world_matrix.data(), 16 * sizeof(float), + cudaMemcpyHostToDevice); + +#ifdef __CUDACC__ + cudaEvent_t start, stop; + if (kernel_time_ms) { + cudaEventCreate(&start); + cudaEventCreate(&stop); + cudaEventRecord(start); + } + + TraceBetweenPointsKernel<<>>( + d_in_pts, d_out_pts, num_lines, d_out_elements, d_out_counts, + d_out_lengths, max_elements_per_ray, dims(0), dims(1), dims(2), + d_inv_world, m_scale(0), m_scale(1), m_scale(2), incs(0), incs(1), + incs(2)); + + if (kernel_time_ms) { + cudaEventRecord(stop); + cudaEventSynchronize(stop); + cudaEventElapsedTime(kernel_time_ms, start, stop); + cudaEventDestroy(start); + cudaEventDestroy(stop); + } else { + cudaDeviceSynchronize(); + } + + cudaError_t err = cudaGetLastError(); + if (err != cudaSuccess) { + std::cerr << "CUDA Error in TraceBetweenPointsCUDA: " + << cudaGetErrorString(err) << std::endl; + } +#else + std::cerr << "TraceBetweenPointsKernel requires NVCC!" << std::endl; +#endif + + std::vector h_out_counts(num_lines); + std::vector h_out_lengths(num_lines); + cudaMemcpy(h_out_counts.data(), d_out_counts, num_lines * sizeof(size_t), + cudaMemcpyDeviceToHost); + cudaMemcpy(h_out_lengths.data(), d_out_lengths, num_lines * sizeof(float), + cudaMemcpyDeviceToHost); + + for (size_t i = 0; i < num_lines; ++i) { + out_rays[i].SetCount(h_out_counts[i]); + out_rays[i].SetTotalLength(h_out_lengths[i]); + } + + if (alloc_pts) { + cudaFree(d_in_pts); + cudaFree(d_out_pts); + } + cudaFree(d_out_elements); + cudaFree(d_out_counts); + cudaFree(d_out_lengths); + cudaFree(d_inv_world); +} + } // namespace uLib #endif // USE_CUDA diff --git a/src/Math/testing/CMakeLists.txt b/src/Math/testing/CMakeLists.txt index 00268eb..a88969b 100644 --- a/src/Math/testing/CMakeLists.txt +++ b/src/Math/testing/CMakeLists.txt @@ -5,6 +5,7 @@ set(TESTS ContainerBoxTest VoxImageTest VoxRaytracerTest + VoxRaytracerTestExtended StructuredDataTest VoxImageFilterTest PolicyTest @@ -24,6 +25,6 @@ set(LIBRARIES uLib_add_tests(Math) if(USE_CUDA) - set_source_files_properties(VoxImageTest.cpp VoxImageCopyTest.cpp VoxImageFilterTest.cpp VoxRaytracerTest.cpp PROPERTIES LANGUAGE CUDA) - set_source_files_properties(VoxRaytracerTest.cpp PROPERTIES CXX_STANDARD 17 CUDA_STANDARD 17) + set_source_files_properties(VoxImageTest.cpp VoxImageCopyTest.cpp VoxImageFilterTest.cpp VoxRaytracerTest.cpp VoxRaytracerTestExtended.cpp PROPERTIES LANGUAGE CUDA) + set_source_files_properties(VoxRaytracerTest.cpp VoxRaytracerTestExtended.cpp PROPERTIES CXX_STANDARD 17 CUDA_STANDARD 17) endif() diff --git a/src/Math/testing/VoxRaytracerTest.cpp b/src/Math/testing/VoxRaytracerTest.cpp index 3ba9086..ed03bba 100644 --- a/src/Math/testing/VoxRaytracerTest.cpp +++ b/src/Math/testing/VoxRaytracerTest.cpp @@ -94,7 +94,8 @@ int main() { Raytracer::RayData rdata = ray.TraceBetweenPoints(HPoint3f(-3, -3, -3), HPoint3f(3, 3, 3)); - for (const Raytracer::RayData::Element &el : rdata.Data()) { + for (size_t i = 0; i < rdata.Count(); ++i) { + const Raytracer::RayData::Element &el = rdata.Data()[i]; std::cout << " " << el.vox_id << " , " << el.L << "\n"; } } @@ -105,7 +106,7 @@ int main() { Raytracer rt(img); Raytracer::RayData ray = rt.TraceBetweenPoints(pt1, pt2); - TEST1(ray.Data().size() == 2); + TEST1(ray.Count() == 2); TEST1(ray.Data().at(0).vox_id == 6); TEST1(ray.Data().at(1).vox_id == 7); ray.PrintSelf(std::cout); @@ -117,7 +118,7 @@ int main() { Raytracer rt(img); Raytracer::RayData ray = rt.TraceBetweenPoints(pt1, pt2); - TEST1(ray.Data().size() == 2); + TEST1(ray.Count() == 2); TEST1(ray.Data().at(0).vox_id == 6); TEST1(ray.Data().at(1).vox_id == 4); ray.PrintSelf(std::cout); @@ -129,7 +130,7 @@ int main() { Raytracer rt(img); Raytracer::RayData ray = rt.TraceBetweenPoints(pt1, pt2); - TEST1(ray.Data().size() == 4); + TEST1(ray.Count() == 4); TEST1(ray.Data().at(0).vox_id == 6); TEST1(ray.Data().at(1).vox_id == 4); TEST1(ray.Data().at(2).vox_id == 5); @@ -141,6 +142,46 @@ int main() { { std::cout << "\n--- Testing CUDA Raytracer Accumulator ---\n"; + Raytracer rt(img); + + { + HPoint3f pt1(1, -0.5, 1); + HPoint3f pt2(1, 4.5, 1); + HPoint3f pts1[1] = {pt1}; + HPoint3f pts2[1] = {pt2}; + Raytracer::RayData ray_cuda[1]; + rt.TraceBetweenPointsCUDA(pts1, pts2, 1, ray_cuda); + TEST1(ray_cuda[0].Count() == 2); + TEST1(ray_cuda[0].Data().at(0).vox_id == 6); + TEST1(ray_cuda[0].Data().at(1).vox_id == 7); + } + + { + HPoint3f pt1(5, 1, 1); + HPoint3f pt2(-3, 1, 1); + HPoint3f pts1[1] = {pt1}; + HPoint3f pts2[1] = {pt2}; + Raytracer::RayData ray_cuda[1]; + rt.TraceBetweenPointsCUDA(pts1, pts2, 1, ray_cuda); + TEST1(ray_cuda[0].Count() == 2); + TEST1(ray_cuda[0].Data().at(0).vox_id == 6); + TEST1(ray_cuda[0].Data().at(1).vox_id == 4); + } + + { + HPoint3f pt1(1, 1, 1); + HPoint3f pt2(-1, 3, -1); + HPoint3f pts1[1] = {pt1}; + HPoint3f pts2[1] = {pt2}; + Raytracer::RayData ray_cuda[1]; + rt.TraceBetweenPointsCUDA(pts1, pts2, 1, ray_cuda); + TEST1(ray_cuda[0].Count() == 4); + TEST1(ray_cuda[0].Data().at(0).vox_id == 6); + TEST1(ray_cuda[0].Data().at(1).vox_id == 4); + TEST1(ray_cuda[0].Data().at(2).vox_id == 5); + TEST1(ray_cuda[0].Data().at(3).vox_id == 1); + } + VoxImage img_cuda(Vector3i(4, 4, 4)); img_cuda.SetSpacing(Vector3f(2, 2, 2)); img_cuda.SetPosition(Vector3f(-4, -4, -4)); diff --git a/src/Math/testing/VoxRaytracerTestExtended.cpp b/src/Math/testing/VoxRaytracerTestExtended.cpp new file mode 100644 index 0000000..9696c97 --- /dev/null +++ b/src/Math/testing/VoxRaytracerTestExtended.cpp @@ -0,0 +1,211 @@ +/*////////////////////////////////////////////////////////////////////////////// +// CMT Cosmic Muon Tomography project ////////////////////////////////////////// +//////////////////////////////////////////////////////////////////////////////// + + Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova + All rights reserved + + Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > + + ------------------------------------------------------------------ + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 3.0 of the License, or (at your option) any later version. + + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with this library. + +//////////////////////////////////////////////////////////////////////////////*/ + +#include "Math/StructuredGrid.h" +#include "Math/VoxRaytracer.h" +#include "testing-prototype.h" +#include +#include +#include + +using namespace uLib; + +typedef VoxRaytracer Raytracer; + +int main() { + BEGIN_TESTING(Math VoxRaytracer Extended Benchmark); + + std::cout << "\n=============================================\n"; + std::cout << " VoxRaytracer CPU vs CUDA Benchmark Test\n"; + std::cout << "=============================================\n\n"; + + // Create a 100x100x100 grid (1 million voxels) + StructuredGrid img(Vector3i(100, 100, 100)); + img.SetSpacing(Vector3f(1.0f, 1.0f, 1.0f)); + img.SetPosition(Vector3f(-50.0f, -50.0f, -50.0f)); + + Raytracer rt(img); + + const size_t NUM_RAYS = 1000000; + std::cout << "Generating " << NUM_RAYS + << " random ray pairs across a 100x100x100 grid...\n"; + + std::vector in_pts(NUM_RAYS); + std::vector out_pts(NUM_RAYS); + + // Use a fixed seed for reproducible tests + std::random_device rd; + std::mt19937 gen(rd()); + // The grid spans from -50 to 50 on each axis + std::uniform_real_distribution dist(-49.9f, 49.9f); + // Pick a random face for in/out to ensure rays cross the volume + std::uniform_int_distribution face_dist(0, 5); + + for (size_t i = 0; i < NUM_RAYS; ++i) { + HPoint3f p1, p2; + // Generate point 1 on a random face + int f1 = face_dist(gen); + p1(0) = (f1 == 0) ? -50.0f : (f1 == 1) ? 50.0f : dist(gen); + p1(1) = (f1 == 2) ? -50.0f : (f1 == 3) ? 50.0f : dist(gen); + p1(2) = (f1 == 4) ? -50.0f : (f1 == 5) ? 50.0f : dist(gen); + p1(3) = 1.0f; + + // Generate point 2 on a different face + int f2; + do { + f2 = face_dist(gen); + } while ( + f1 == f2 || + f1 / 2 == + f2 / 2); // Avoid same face or opposite face trivially if desired + + p2(0) = (f2 == 0) ? -50.0f : (f2 == 1) ? 50.0f : dist(gen); + p2(1) = (f2 == 2) ? -50.0f : (f2 == 3) ? 50.0f : dist(gen); + p2(2) = (f2 == 4) ? -50.0f : (f2 == 5) ? 50.0f : dist(gen); + p2(3) = 1.0f; + + in_pts[i] = p1; + out_pts[i] = p2; + } + + std::vector cpu_results(NUM_RAYS); + + std::cout << "\nRunning CPU Raytracing...\n"; + auto start_cpu = std::chrono::high_resolution_clock::now(); + + for (size_t i = 0; i < NUM_RAYS; ++i) { + cpu_results[i] = rt.TraceBetweenPoints(in_pts[i], out_pts[i]); + } + + auto end_cpu = std::chrono::high_resolution_clock::now(); + std::chrono::duration cpu_ms = end_cpu - start_cpu; + std::cout << "CPU Execution Time: " << cpu_ms.count() << " ms\n"; + +#ifdef USE_CUDA + std::vector cuda_results(NUM_RAYS); + int max_elements_per_ray = + 400; // 100x100x100 grid max trace length usually ~300 items + + std::cout << "\nPre-Allocating Data to VRAM...\n"; + // Pre-allocate input and output points to VRAM + HPoint3f *d_in_pts; + HPoint3f *d_out_pts; + size_t pts_size = NUM_RAYS * sizeof(HPoint3f); + cudaMalloc(&d_in_pts, pts_size); + cudaMalloc(&d_out_pts, pts_size); + cudaMemcpy(d_in_pts, in_pts.data(), pts_size, cudaMemcpyHostToDevice); + cudaMemcpy(d_out_pts, out_pts.data(), pts_size, cudaMemcpyHostToDevice); + + // Pre-allocate elements output arrays in VRAM via DataAllocator + for (size_t i = 0; i < NUM_RAYS; ++i) { + cuda_results[i].Data().resize(max_elements_per_ray); + cuda_results[i].Data().MoveToVRAM(); + } + + std::cout << "Running CUDA Raytracing...\n"; + auto start_cuda = std::chrono::high_resolution_clock::now(); + + float kernel_time_ms = 0.0f; + rt.TraceBetweenPointsCUDA(d_in_pts, d_out_pts, NUM_RAYS, cuda_results.data(), + max_elements_per_ray, &kernel_time_ms); + + auto end_cuda = std::chrono::high_resolution_clock::now(); + std::chrono::duration cuda_ms = end_cuda - start_cuda; + + // Free explicit input pointers + cudaFree(d_in_pts); + cudaFree(d_out_pts); + + // Also query memory usage info + size_t free_byte; + size_t total_byte; + cudaMemGetInfo(&free_byte, &total_byte); + double free_db = (double)free_byte / (1024.0 * 1024.0); + double total_db = (double)total_byte / (1024.0 * 1024.0); + double used_db = total_db - free_db; + + std::cout << "CUDA Kernel Exec Time: " << kernel_time_ms << " ms\n"; + std::cout << "CUDA Total Time (API): " << cuda_ms.count() << " ms\n"; + std::cout << "CUDA Total Time Spdup: " << (cpu_ms.count() / cuda_ms.count()) + << "x\n"; + if (kernel_time_ms > 0.0f) { + std::cout << "CUDA Kernel Speedup : " << (cpu_ms.count() / kernel_time_ms) + << "x\n"; + } + std::cout << "CUDA VRAM Usage Est. : " << used_db << " MB out of " << total_db + << " MB total\n"; + + std::cout << "\nVerifying CUDA results against CPU...\n"; + size_t mismatches = 0; + for (size_t i = 0; i < NUM_RAYS; ++i) { + const auto &cpu_ray = cpu_results[i]; + const auto &cuda_ray = cuda_results[i]; + + if (cpu_ray.Count() != cuda_ray.Count() || + std::abs(cpu_ray.TotalLength() - cuda_ray.TotalLength()) > 1e-3) { + if (mismatches < 5) { + std::cout << "Mismatch at ray " << i + << ": CPU count=" << cpu_ray.Count() + << ", len=" << cpu_ray.TotalLength() + << " vs CUDA count=" << cuda_ray.Count() + << ", len=" << cuda_ray.TotalLength() << "\n"; + } + mismatches++; + continue; + } + + // Check elements + for (size_t j = 0; j < cpu_ray.Count(); ++j) { + if (cpu_ray.Data()[j].vox_id != cuda_ray.Data()[j].vox_id || + std::abs(cpu_ray.Data()[j].L - cuda_ray.Data()[j].L) > 1e-3) { + if (mismatches < 5) { + std::cout << "Mismatch at ray " << i << ", element " << j + << ": CPU id=" << cpu_ray.Data()[j].vox_id + << ", L=" << cpu_ray.Data()[j].L + << " vs CUDA id=" << cuda_ray.Data()[j].vox_id + << ", L=" << cuda_ray.Data()[j].L << "\n"; + } + mismatches++; + break; + } + } + } + + if (mismatches == 0) { + std::cout << "SUCCESS! All " << NUM_RAYS + << " rays perfectly match between CPU and CUDA.\n"; + } else { + std::cout << "FAILED! " << mismatches << " rays contain mismatched data.\n"; + } + + TEST1(mismatches == 0); + +#else + std::cout << "\nUSE_CUDA is not defined. Skipping CUDA benchmarking.\n"; +#endif + + std::cout << "=============================================\n"; + END_TESTING +} diff --git a/src/Vtk/CMakeLists.txt b/src/Vtk/CMakeLists.txt index 9c193ea..8654e45 100644 --- a/src/Vtk/CMakeLists.txt +++ b/src/Vtk/CMakeLists.txt @@ -19,6 +19,11 @@ set(LIBRARIES Eigen3::Eigen ${VTK_LIBRARIES} ${PACKAGE_LIBPREFIX}Math) +if(USE_CUDA) + find_package(CUDAToolkit REQUIRED) + list(APPEND LIBRARIES CUDA::cudart) +endif() + set(libname ${PACKAGE_LIBPREFIX}Vtk) set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE) set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Vtk PARENT_SCOPE) diff --git a/src/Vtk/vtkVoxRaytracerRepresentation.cpp b/src/Vtk/vtkVoxRaytracerRepresentation.cpp index 214b250..d4ffc8d 100644 --- a/src/Vtk/vtkVoxRaytracerRepresentation.cpp +++ b/src/Vtk/vtkVoxRaytracerRepresentation.cpp @@ -23,21 +23,17 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifdef HAVE_CONFIG_H #include "config.h" #endif - #include "vtkVoxRaytracerRepresentation.h" #include "Math/VoxRaytracer.h" -//#include "vtkMuonEvent.h" +// #include "vtkMuonEvent.h" #include "vtkMuonScatter.h" - namespace uLib { namespace Vtk { @@ -45,345 +41,297 @@ namespace Vtk { ////// VOX RAYTRACER REPRESENTATION /////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// +vtkVoxRaytracerRepresentation::vtkVoxRaytracerRepresentation(Content &content) + : m_Content(&content), m_Assembly(vtkAssembly::New()), + m_Sphere1(vtkSphereSource::New()), m_Sphere2(vtkSphereSource::New()), + m_Line1(vtkLineSource::New()), m_Line2(vtkLineSource::New()), + m_Line3(vtkLineSource::New()), m_RayLine(vtkAppendPolyData::New()), + m_RayLineActor(vtkActor::New()), + m_RayRepresentation(vtkAppendPolyData::New()), + m_RayRepresentationActor(vtkActor::New()), + m_Transform(vtkTransform::New()) { + default_radius = content.GetImage()->GetSpacing()(0) / 4; + m_Sphere1->SetRadius(default_radius); + m_Sphere2->SetRadius(default_radius); + m_SelectedElement = m_RayLine; + InstallPipe(); +} -vtkVoxRaytracerRepresentation::vtkVoxRaytracerRepresentation(Content &content) : - m_Content(&content), - m_Assembly(vtkAssembly::New()), - m_Sphere1(vtkSphereSource::New()), - m_Sphere2(vtkSphereSource::New()), - m_Line1(vtkLineSource::New()), - m_Line2(vtkLineSource::New()), - m_Line3(vtkLineSource::New()), - m_RayLine(vtkAppendPolyData::New()), - m_RayLineActor(vtkActor::New()), - m_RayRepresentation(vtkAppendPolyData::New()), - m_RayRepresentationActor(vtkActor::New()), - m_Transform(vtkTransform::New()) -{ - default_radius = content.GetImage()->GetSpacing()(0)/4; - m_Sphere1->SetRadius(default_radius); - m_Sphere2->SetRadius(default_radius); +vtkVoxRaytracerRepresentation::~vtkVoxRaytracerRepresentation() { + m_Assembly->Delete(); + m_RayLine->Delete(); + m_RayLineActor->Delete(); + m_RayRepresentationActor->Delete(); + m_Transform->Delete(); +} + +VoxRaytracer *vtkVoxRaytracerRepresentation::GetRaytracerAlgorithm() { + return m_Content; +} + +vtkProp *vtkVoxRaytracerRepresentation::GetProp() { return m_Assembly; } + +vtkPolyData *vtkVoxRaytracerRepresentation::GetPolyData() const { + std::cout << "get Raytracer polydata\n"; + m_SelectedElement->Update(); + return m_SelectedElement->GetOutput(); +} + +void vtkVoxRaytracerRepresentation::SetRepresentationElements( + vtkVoxRaytracerRepresentation::RepresentationElements el) { + switch (el) { + case Vtk::vtkVoxRaytracerRepresentation::RayElements: m_SelectedElement = m_RayLine; - - InstallPipe(); + break; + case Vtk::vtkVoxRaytracerRepresentation::VoxelsElements: + m_SelectedElement = m_RayRepresentation; + break; + default: + m_SelectedElement = m_RayLine; + break; + } } -vtkVoxRaytracerRepresentation::~vtkVoxRaytracerRepresentation() -{ - m_Assembly->Delete(); - m_RayLine->Delete(); - m_RayLineActor->Delete(); - m_RayRepresentationActor->Delete(); - m_Transform->Delete(); +void vtkVoxRaytracerRepresentation::SetMuon(MuonScatter &muon) { + HPoint3f pt1, pt2, src; + src = muon.LineIn().origin; + m_Content->GetEntryPoint(muon.LineIn(), pt1); + m_Sphere1->SetCenter(pt1(0), pt1(1), pt1(2)); + m_Line1->SetPoint1(src(0), src(1), src(2)); + m_Line1->SetPoint2(pt1(0), pt1(1), pt1(2)); + + HLine3f line_out = muon.LineOut(); + src = line_out.origin; + float *direction = line_out.direction.data(); + for (int i = 0; i < 3; ++i) + direction[i] *= -1; + m_Content->GetEntryPoint(line_out, pt2); + m_Sphere2->SetCenter(pt2(0), pt2(1), pt2(2)); + m_Line2->SetPoint1(src(0), src(1), src(2)); + m_Line2->SetPoint2(pt2(0), pt2(1), pt2(2)); + + m_Line3->SetPoint1(pt1(0), pt1(1), pt1(2)); + m_Line3->SetPoint2(pt2(0), pt2(1), pt2(2)); + + // Create a vtkPoints object and store the points in it + vtkSmartPointer points = vtkSmartPointer::New(); + points->InsertNextPoint(pt1(0), pt1(1), pt1(2)); + points->InsertNextPoint(pt2(0), pt2(1), pt2(2)); + + // Create a cell array to store the lines in and add the lines to it + vtkSmartPointer lines = vtkSmartPointer::New(); + + vtkSmartPointer line = vtkSmartPointer::New(); + line->GetPointIds()->SetId(0, 0); + line->GetPointIds()->SetId(1, 1); + lines->InsertNextCell(line); + + // Create a polydata to store everything in + vtkSmartPointer linesPolyData = + vtkSmartPointer::New(); + + // Add the points to the dataset + linesPolyData->SetPoints(points); + + // Add the lines to the dataset + linesPolyData->SetLines(lines); + + m_RayLine->RemoveAllInputs(); +#if VTK_MAJOR_VERSION <= 5 + m_RayLine->AddInputConnection(linesPolyData->GetProducerPort()); +#endif + m_RayLine->AddInputConnection(m_Line1->GetOutputPort()); + m_RayLine->AddInputConnection(m_Sphere1->GetOutputPort()); + m_RayLine->AddInputConnection(m_Line2->GetOutputPort()); + m_RayLine->AddInputConnection(m_Sphere2->GetOutputPort()); + + vtkSmartPointer vmat = vtkSmartPointer::New(); + Matrix4f mat = m_Content->GetImage()->GetWorldMatrix(); + for (int i = 0; i < 4; ++i) + for (int j = 0; j < 4; ++j) + vmat->SetElement(i, j, mat(i, j)); + m_Transform->SetMatrix(vmat); + + this->SetRay(pt1, pt2); } -VoxRaytracer *vtkVoxRaytracerRepresentation::GetRaytracerAlgorithm() -{ - return m_Content; +void vtkVoxRaytracerRepresentation::SetMuon(MuonScatter &muon, HPoint3f poca) { + HPoint3f pt1, pt2, src; + src = muon.LineIn().origin; + m_Content->GetEntryPoint(muon.LineIn(), pt1); + m_Sphere1->SetCenter(pt1(0), pt1(1), pt1(2)); + m_Line1->SetPoint1(src(0), src(1), src(2)); + m_Line1->SetPoint2(pt1(0), pt1(1), pt1(2)); + + HLine3f line_out = muon.LineOut(); + src = line_out.origin; + float *direction = line_out.direction.data(); + for (int i = 0; i < 3; ++i) + direction[i] *= -1; + m_Content->GetEntryPoint(line_out, pt2); + m_Sphere2->SetCenter(pt2(0), pt2(1), pt2(2)); + m_Line2->SetPoint1(src(0), src(1), src(2)); + m_Line2->SetPoint2(pt2(0), pt2(1), pt2(2)); + + m_Line3->SetPoint1(pt1(0), pt1(1), pt1(2)); + m_Line3->SetPoint2(pt2(0), pt2(1), pt2(2)); + + // Create a vtkPoints object and store the points in it + vtkSmartPointer points = vtkSmartPointer::New(); + points->InsertNextPoint(pt1(0), pt1(1), pt1(2)); + points->InsertNextPoint(poca(0), poca(1), poca(2)); + points->InsertNextPoint(pt2(0), pt2(1), pt2(2)); + + // Create a cell array to store the lines in and add the lines to it + vtkSmartPointer lines = vtkSmartPointer::New(); + + for (unsigned int i = 0; i < 2; i++) { + vtkSmartPointer line = vtkSmartPointer::New(); + line->GetPointIds()->SetId(0, i); + line->GetPointIds()->SetId(1, i + 1); + lines->InsertNextCell(line); + } + + // Create a polydata to store everything in + vtkSmartPointer linesPolyData = + vtkSmartPointer::New(); + + // Add the points to the dataset + linesPolyData->SetPoints(points); + + // Add the lines to the dataset + linesPolyData->SetLines(lines); + + m_RayLine->RemoveAllInputs(); +#if VTK_MAJOR_VERSION <= 5 + m_RayLine->AddInputConnection(linesPolyData->GetProducerPort()); +#endif + m_RayLine->AddInputConnection(m_Line1->GetOutputPort()); + m_RayLine->AddInputConnection(m_Sphere1->GetOutputPort()); + m_RayLine->AddInputConnection(m_Line2->GetOutputPort()); + m_RayLine->AddInputConnection(m_Sphere2->GetOutputPort()); + + vtkSmartPointer poca_sphere = + vtkSmartPointer::New(); + poca_sphere->SetRadius(default_radius); + poca_sphere->SetCenter(poca(0), poca(1), poca(2)); + m_RayLine->AddInputConnection(poca_sphere->GetOutputPort()); + + vtkSmartPointer vmat = vtkSmartPointer::New(); + Matrix4f mat = m_Content->GetImage()->GetWorldMatrix(); + for (int i = 0; i < 4; ++i) + for (int j = 0; j < 4; ++j) + vmat->SetElement(i, j, mat(i, j)); + m_Transform->SetMatrix(vmat); + + if (m_Content->GetImage()->IsInsideBounds(poca)) + this->SetRay(pt1, poca, pt2); + else + this->SetRay(pt1, pt2); } -vtkProp *vtkVoxRaytracerRepresentation::GetProp() -{ - return m_Assembly; +void vtkVoxRaytracerRepresentation::SetMuon(vtkMuonScatter &muon) { + HPoint3f poca = muon.GetPocaPoint(); + MuonScatter &mu = muon.GetContent(); + this->SetMuon(mu, poca); } -vtkPolyData *vtkVoxRaytracerRepresentation::GetPolyData() const -{ - std::cout << "get Raytracer polydata\n"; - m_SelectedElement->Update(); - return m_SelectedElement->GetOutput(); +VoxRaytracer::RayData vtkVoxRaytracerRepresentation::GetRay() { return m_Ray; } + +void vtkVoxRaytracerRepresentation::SetRay(HPoint3f in, HPoint3f out) { + m_Ray = m_Content->TraceBetweenPoints(in, out); + this->SetRay(&m_Ray); } -void vtkVoxRaytracerRepresentation::SetRepresentationElements(vtkVoxRaytracerRepresentation::RepresentationElements el) -{ - switch(el) { - case Vtk::vtkVoxRaytracerRepresentation::RayElements: - m_SelectedElement = m_RayLine; - break; - case Vtk::vtkVoxRaytracerRepresentation::VoxelsElements: - m_SelectedElement = m_RayRepresentation; - break; - default: - m_SelectedElement = m_RayLine; - break; - } +void vtkVoxRaytracerRepresentation::SetRay(HPoint3f in, HPoint3f mid, + HPoint3f out) { + m_Ray = m_Content->TraceBetweenPoints(in, mid); + m_Ray.AppendRay(m_Content->TraceBetweenPoints(mid, out)); + this->SetRay(&m_Ray); } +void vtkVoxRaytracerRepresentation::SetRay(VoxRaytracer::RayData *ray) { + vtkAppendPolyData *appender = m_RayRepresentation; + appender->RemoveAllInputs(); -void vtkVoxRaytracerRepresentation::SetMuon(MuonScatter &muon) -{ - HPoint3f pt1,pt2,src; - src = muon.LineIn().origin; - m_Content->GetEntryPoint(muon.LineIn(),pt1); - m_Sphere1->SetCenter(pt1(0),pt1(1),pt1(2)); - m_Line1->SetPoint1(src(0),src(1),src(2)); - m_Line1->SetPoint2(pt1(0),pt1(1),pt1(2)); - - HLine3f line_out = muon.LineOut(); - src = line_out.origin; - float *direction = line_out.direction.data(); - for(int i=0;i<3;++i) direction[i] *= -1; - m_Content->GetEntryPoint(line_out,pt2); - m_Sphere2->SetCenter(pt2(0),pt2(1),pt2(2)); - m_Line2->SetPoint1(src(0),src(1),src(2)); - m_Line2->SetPoint2(pt2(0),pt2(1),pt2(2)); - - m_Line3->SetPoint1(pt1(0),pt1(1),pt1(2)); - m_Line3->SetPoint2(pt2(0),pt2(1),pt2(2)); - - // Create a vtkPoints object and store the points in it - vtkSmartPointer points = - vtkSmartPointer::New(); - points->InsertNextPoint(pt1(0),pt1(1),pt1(2)); - points->InsertNextPoint(pt2(0),pt2(1),pt2(2)); - - // Create a cell array to store the lines in and add the lines to it - vtkSmartPointer lines = - vtkSmartPointer::New(); - - vtkSmartPointer line = - vtkSmartPointer::New(); - line->GetPointIds()->SetId(0,0); - line->GetPointIds()->SetId(1,1); - lines->InsertNextCell(line); - - // Create a polydata to store everything in - vtkSmartPointer linesPolyData = - vtkSmartPointer::New(); - - // Add the points to the dataset - linesPolyData->SetPoints(points); - - // Add the lines to the dataset - linesPolyData->SetLines(lines); - - m_RayLine->RemoveAllInputs(); -# if VTK_MAJOR_VERSION <= 5 - m_RayLine->AddInputConnection(linesPolyData->GetProducerPort()); -# endif - m_RayLine->AddInputConnection(m_Line1->GetOutputPort()); - m_RayLine->AddInputConnection(m_Sphere1->GetOutputPort()); - m_RayLine->AddInputConnection(m_Line2->GetOutputPort()); - m_RayLine->AddInputConnection(m_Sphere2->GetOutputPort()); - - - vtkSmartPointer vmat = vtkSmartPointer::New(); - Matrix4f mat = m_Content->GetImage()->GetWorldMatrix(); - for(int i=0; i<4; ++i) - for(int j=0; j<4; ++j) - vmat->SetElement(i,j,mat(i,j)); - m_Transform->SetMatrix(vmat); - - this->SetRay(pt1,pt2); + for (size_t i = 0; i < ray->Count(); ++i) { + int id = ray->Data().at(i).vox_id; + Vector3i idv = m_Content->GetImage()->UnMap(id); + vtkSmartPointer cube = vtkSmartPointer::New(); + cube->SetBounds(idv(0), idv(0) + 1, idv(1), idv(1) + 1, idv(2), idv(2) + 1); + cube->Update(); +#if VTK_MAJOR_VERSION <= 5 + appender->AddInput(cube->GetOutput()); +#endif + appender->Update(); + } } -void vtkVoxRaytracerRepresentation::SetMuon(MuonScatter &muon, HPoint3f poca) -{ - HPoint3f pt1,pt2,src; - src = muon.LineIn().origin; - m_Content->GetEntryPoint(muon.LineIn(),pt1); - m_Sphere1->SetCenter(pt1(0),pt1(1),pt1(2)); - m_Line1->SetPoint1(src(0),src(1),src(2)); - m_Line1->SetPoint2(pt1(0),pt1(1),pt1(2)); - - HLine3f line_out = muon.LineOut(); - src = line_out.origin; - float *direction = line_out.direction.data(); - for(int i=0;i<3;++i) direction[i] *= -1; - m_Content->GetEntryPoint(line_out,pt2); - m_Sphere2->SetCenter(pt2(0),pt2(1),pt2(2)); - m_Line2->SetPoint1(src(0),src(1),src(2)); - m_Line2->SetPoint2(pt2(0),pt2(1),pt2(2)); - - m_Line3->SetPoint1(pt1(0),pt1(1),pt1(2)); - m_Line3->SetPoint2(pt2(0),pt2(1),pt2(2)); - - // Create a vtkPoints object and store the points in it - vtkSmartPointer points = - vtkSmartPointer::New(); - points->InsertNextPoint(pt1(0),pt1(1),pt1(2)); - points->InsertNextPoint(poca(0),poca(1),poca(2)); - points->InsertNextPoint(pt2(0),pt2(1),pt2(2)); - - // Create a cell array to store the lines in and add the lines to it - vtkSmartPointer lines = - vtkSmartPointer::New(); - - for(unsigned int i = 0; i < 2; i++) - { - vtkSmartPointer line = - vtkSmartPointer::New(); - line->GetPointIds()->SetId(0,i); - line->GetPointIds()->SetId(1,i+1); - lines->InsertNextCell(line); - } - - // Create a polydata to store everything in - vtkSmartPointer linesPolyData = - vtkSmartPointer::New(); - - // Add the points to the dataset - linesPolyData->SetPoints(points); - - // Add the lines to the dataset - linesPolyData->SetLines(lines); - - m_RayLine->RemoveAllInputs(); -# if VTK_MAJOR_VERSION <= 5 - m_RayLine->AddInputConnection(linesPolyData->GetProducerPort()); -# endif - m_RayLine->AddInputConnection(m_Line1->GetOutputPort()); - m_RayLine->AddInputConnection(m_Sphere1->GetOutputPort()); - m_RayLine->AddInputConnection(m_Line2->GetOutputPort()); - m_RayLine->AddInputConnection(m_Sphere2->GetOutputPort()); - - - vtkSmartPointer poca_sphere = - vtkSmartPointer::New(); - poca_sphere->SetRadius(default_radius); - poca_sphere->SetCenter(poca(0),poca(1),poca(2)); - m_RayLine->AddInputConnection(poca_sphere->GetOutputPort()); - - - vtkSmartPointer vmat = vtkSmartPointer::New(); - Matrix4f mat = m_Content->GetImage()->GetWorldMatrix(); - for(int i=0; i<4; ++i) - for(int j=0; j<4; ++j) - vmat->SetElement(i,j,mat(i,j)); - m_Transform->SetMatrix(vmat); - - if(m_Content->GetImage()->IsInsideBounds(poca)) - this->SetRay(pt1,poca,pt2); - else - this->SetRay(pt1,pt2); +void vtkVoxRaytracerRepresentation::SetVoxelsColor(Vector4f rgba) { + this->SetColor(m_RayRepresentationActor, rgba); } - -void vtkVoxRaytracerRepresentation::SetMuon(vtkMuonScatter &muon) -{ - HPoint3f poca = muon.GetPocaPoint(); - MuonScatter &mu = muon.GetContent(); - this->SetMuon(mu,poca); +void vtkVoxRaytracerRepresentation::SetRayColor(Vector4f rgba) { + this->SetColor(m_RayLineActor, rgba); } - -VoxRaytracer::RayData vtkVoxRaytracerRepresentation::GetRay() -{ - return m_Ray; +void vtkVoxRaytracerRepresentation::SetColor(vtkActor *actor, Vector4f rgba) { + if (!actor) + return; + vtkProperty *pr = actor->GetProperty(); + pr->SetDiffuseColor(rgba(0), rgba(1), rgba(2)); + pr->SetOpacity(rgba(3)); + pr->SetDiffuse(1); } -void vtkVoxRaytracerRepresentation::SetRay(HPoint3f in, HPoint3f out) -{ - m_Ray = m_Content->TraceBetweenPoints(in,out); - this->SetRay(&m_Ray); +void vtkVoxRaytracerRepresentation::InstallPipe() { + + vtkSmartPointer append = + vtkSmartPointer::New(); + append->AddInputConnection(m_Sphere1->GetOutputPort()); + append->AddInputConnection(m_Sphere2->GetOutputPort()); + append->AddInputConnection(m_Line1->GetOutputPort()); + append->AddInputConnection(m_Line2->GetOutputPort()); + + append->Update(); + vtkSmartPointer mapper = + vtkSmartPointer::New(); + + mapper->SetInputConnection(append->GetOutputPort()); + mapper->Update(); + + vtkSmartPointer actor = vtkSmartPointer::New(); + actor->SetMapper(mapper); + actor->GetProperty()->SetColor(0.6, 0.6, 1); + this->SetProp(actor); + + mapper = vtkSmartPointer::New(); + mapper->SetInputConnection(m_RayLine->GetOutputPort()); + mapper->Update(); + + m_RayLineActor->SetMapper(mapper); + m_RayLineActor->GetProperty()->SetColor(1, 0, 0); + this->SetProp(m_RayLineActor); + + vtkSmartPointer polyfilter = + vtkSmartPointer::New(); + + polyfilter->SetInputConnection(m_RayRepresentation->GetOutputPort()); + polyfilter->SetTransform(m_Transform); + + mapper = vtkSmartPointer::New(); + mapper->SetInputConnection(polyfilter->GetOutputPort()); + mapper->Update(); + + vtkActor *vra = m_RayRepresentationActor; + vra->SetMapper(mapper); + vra->GetProperty()->SetOpacity(0.2); + vra->GetProperty()->SetEdgeVisibility(true); + vra->GetProperty()->SetColor(0.5, 0.5, 0.5); + + this->SetProp(vra); } -void vtkVoxRaytracerRepresentation::SetRay(HPoint3f in, HPoint3f mid, HPoint3f out) -{ - m_Ray = m_Content->TraceBetweenPoints(in,mid); - m_Ray.AppendRay( m_Content->TraceBetweenPoints(mid,out) ); - this->SetRay(&m_Ray); -} - -void vtkVoxRaytracerRepresentation::SetRay(VoxRaytracer::RayData *ray) -{ - vtkAppendPolyData *appender = m_RayRepresentation; - appender->RemoveAllInputs(); - - for(int i=0; iData().size(); ++i) { - int id = ray->Data().at(i).vox_id; - Vector3i idv = m_Content->GetImage()->UnMap(id); - vtkSmartPointer cube = - vtkSmartPointer::New(); - cube->SetBounds(idv(0),idv(0)+1,idv(1),idv(1)+1,idv(2),idv(2)+1); - cube->Update(); -# if VTK_MAJOR_VERSION <= 5 - appender->AddInput(cube->GetOutput()); -# endif - appender->Update(); - } - -} - -void vtkVoxRaytracerRepresentation::SetVoxelsColor(Vector4f rgba) -{ - this->SetColor(m_RayRepresentationActor,rgba); -} - -void vtkVoxRaytracerRepresentation::SetRayColor(Vector4f rgba) -{ - this->SetColor(m_RayLineActor,rgba); -} - -void vtkVoxRaytracerRepresentation::SetColor(vtkActor *actor, Vector4f rgba) -{ - if(!actor) return; - vtkProperty *pr = actor->GetProperty(); - pr->SetDiffuseColor( rgba(0), - rgba(1), - rgba(2) ); - pr->SetOpacity( rgba(3) ); - pr->SetDiffuse(1); -} - - - - -void vtkVoxRaytracerRepresentation::InstallPipe() -{ - - vtkSmartPointer append = - vtkSmartPointer::New(); - append->AddInputConnection(m_Sphere1->GetOutputPort()); - append->AddInputConnection(m_Sphere2->GetOutputPort()); - append->AddInputConnection(m_Line1->GetOutputPort()); - append->AddInputConnection(m_Line2->GetOutputPort()); - - append->Update(); - vtkSmartPointer mapper = - vtkSmartPointer::New(); - - mapper->SetInputConnection(append->GetOutputPort()); - mapper->Update(); - - vtkSmartPointer actor = vtkSmartPointer::New(); - actor->SetMapper(mapper); - actor->GetProperty()->SetColor(0.6,0.6,1); - this->SetProp(actor); - - mapper = vtkSmartPointer::New(); - mapper->SetInputConnection(m_RayLine->GetOutputPort()); - mapper->Update(); - - m_RayLineActor->SetMapper(mapper); - m_RayLineActor->GetProperty()->SetColor(1,0,0); - this->SetProp(m_RayLineActor); - - vtkSmartPointer polyfilter = - vtkSmartPointer::New(); - - polyfilter->SetInputConnection(m_RayRepresentation->GetOutputPort()); - polyfilter->SetTransform(m_Transform); - - mapper = vtkSmartPointer::New(); - mapper->SetInputConnection(polyfilter->GetOutputPort()); - mapper->Update(); - - vtkActor *vra = m_RayRepresentationActor; - vra->SetMapper(mapper); - vra->GetProperty()->SetOpacity(0.2); - vra->GetProperty()->SetEdgeVisibility(true); - vra->GetProperty()->SetColor(0.5,0.5,0.5); - - this->SetProp(vra); -} - - - - - - - -} // vtk -} // uLib +} // namespace Vtk +} // namespace uLib From 9a59e031ed98c664233dcd11155388da136e4092 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Wed, 4 Mar 2026 20:52:01 +0000 Subject: [PATCH 11/19] feat: Implement a custom MetaAllocator for `uLib::Vector` to enable GPU memory management and integrate CUDA support into the build system. --- CMakeLists.txt | 2 + src/Core/CMakeLists.txt | 6 +- src/{Math => Core}/DataAllocator.h | 61 ++- src/Core/Vector.h | 470 ++++++++++++++----- src/Core/test_meta_allocator.cpp | 31 ++ src/Core/testing/CMakeLists.txt | 1 + src/Core/testing/VectorMetaAllocatorTest.cpp | 71 +++ src/Core/testing/VectorTest.cpp | 75 ++- src/Math/VoxImage.h | 2 +- src/Math/VoxRaytracer.h | 9 +- 10 files changed, 540 insertions(+), 188 deletions(-) rename src/{Math => Core}/DataAllocator.h (80%) create mode 100644 src/Core/test_meta_allocator.cpp create mode 100644 src/Core/testing/VectorMetaAllocatorTest.cpp diff --git a/CMakeLists.txt b/CMakeLists.txt index 1f6bb1e..c090c3e 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -22,8 +22,10 @@ if(USE_CUDA) set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcudafe \"--diag_suppress=20012\"") set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcudafe \"--diag_suppress=20014\"") set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcudafe \"--diag_suppress=20015\"") + find_package(CUDAToolkit REQUIRED) enable_language(CUDA) set(CMAKE_CUDA_ARCHITECTURES 61) + include_directories(${CMAKE_CUDA_TOOLKIT_INCLUDE_DIRECTORIES}) add_compile_definitions(USE_CUDA) endif() diff --git a/src/Core/CMakeLists.txt b/src/Core/CMakeLists.txt index a1988fa..586f2ef 100644 --- a/src/Core/CMakeLists.txt +++ b/src/Core/CMakeLists.txt @@ -1,5 +1,5 @@ -set(HEADERS Archives.h Array.h Collection.h Debug.h Export.h Function.h Macros.h Mpl.h Object.h Options.h Serializable.h Signal.h Singleton.h SmartPointer.h StaticInterface.h StringReader.h Types.h Uuid.h Vector.h) +set(HEADERS Archives.h Array.h Collection.h DataAllocator.h Debug.h Export.h Function.h Macros.h Mpl.h Object.h Options.h Serializable.h Signal.h Singleton.h SmartPointer.h StaticInterface.h StringReader.h Types.h Uuid.h Vector.h) set(SOURCES Archives.cpp Debug.cpp Object.cpp Options.cpp Serializable.cpp Signal.cpp Uuid.cpp) @@ -13,6 +13,10 @@ add_library(${libname} SHARED ${SOURCES}) set_target_properties(${libname} PROPERTIES VERSION ${PROJECT_VERSION} SOVERSION ${PROJECT_SOVERSION}) +if(USE_CUDA) + set(LIBRARIES ${LIBRARIES} CUDA::cudart) +endif() + target_link_libraries(${libname} ${LIBRARIES}) install(TARGETS ${libname} diff --git a/src/Math/DataAllocator.h b/src/Core/DataAllocator.h similarity index 80% rename from src/Math/DataAllocator.h rename to src/Core/DataAllocator.h index a5ff43b..147dd9f 100644 --- a/src/Math/DataAllocator.h +++ b/src/Core/DataAllocator.h @@ -42,20 +42,26 @@ enum class MemoryDevice { RAM, VRAM }; template class DataAllocator { public: - DataAllocator() - : m_Size(0), m_RamData(nullptr), m_VramData(nullptr), - m_Device(MemoryDevice::RAM) {} - - DataAllocator(size_t size) - : m_Size(size), m_RamData(new T[size]()), m_VramData(nullptr), - m_Device(MemoryDevice::RAM) {} + DataAllocator(size_t size = 0, bool owns_objects = true) + : m_Size(size), m_RamData(nullptr), m_VramData(nullptr), + m_Device(MemoryDevice::RAM), m_OwnsObjects(owns_objects) { + if (m_Size > 0) { + if (m_OwnsObjects) + m_RamData = new T[m_Size](); + else + m_RamData = static_cast(::operator new(m_Size * sizeof(T))); + } + } DataAllocator(const DataAllocator &other) : m_Size(other.m_Size), m_RamData(nullptr), m_VramData(nullptr), - m_Device(other.m_Device) { + m_Device(other.m_Device), m_OwnsObjects(other.m_OwnsObjects) { if (m_Size > 0) { if (other.m_RamData) { - m_RamData = new T[m_Size]; + if (m_OwnsObjects) + m_RamData = new T[m_Size]; + else + m_RamData = static_cast(::operator new(m_Size * sizeof(T))); std::memcpy(m_RamData, other.m_RamData, m_Size * sizeof(T)); } #ifdef USE_CUDA @@ -70,7 +76,10 @@ public: ~DataAllocator() { if (m_RamData) { - delete[] m_RamData; + if (m_OwnsObjects) + delete[] m_RamData; + else + ::operator delete(m_RamData); } #ifdef USE_CUDA if (m_VramData) { @@ -81,11 +90,16 @@ public: DataAllocator &operator=(const DataAllocator &other) { if (this != &other) { + m_OwnsObjects = other.m_OwnsObjects; resize(other.m_Size); m_Device = other.m_Device; if (other.m_RamData) { - if (!m_RamData) - m_RamData = new T[m_Size]; + if (!m_RamData) { + if (m_OwnsObjects) + m_RamData = new T[m_Size]; + else + m_RamData = static_cast(::operator new(m_Size * sizeof(T))); + } std::memcpy(m_RamData, other.m_RamData, m_Size * sizeof(T)); } #ifdef USE_CUDA @@ -103,8 +117,12 @@ public: void MoveToRAM() { if (m_Device == MemoryDevice::RAM) return; - if (!m_RamData && m_Size > 0) - m_RamData = new T[m_Size](); + if (!m_RamData && m_Size > 0) { + if (m_OwnsObjects) + m_RamData = new T[m_Size](); + else + m_RamData = static_cast(::operator new(m_Size * sizeof(T))); + } #ifdef USE_CUDA if (m_VramData && m_Size > 0) { cudaMemcpy(m_RamData, m_VramData, m_Size * sizeof(T), @@ -137,7 +155,11 @@ public: T *newVram = nullptr; if (size > 0) { - newRam = new T[size](); + if (m_OwnsObjects) + newRam = new T[size](); + else + newRam = static_cast(::operator new(size * sizeof(T))); + if (m_RamData) { std::memcpy(newRam, m_RamData, std::min(m_Size, size) * sizeof(T)); } @@ -151,8 +173,12 @@ public: #endif } - if (m_RamData) - delete[] m_RamData; + if (m_RamData) { + if (m_OwnsObjects) + delete[] m_RamData; + else + ::operator delete(m_RamData); + } #ifdef USE_CUDA if (m_VramData) cudaFree(m_VramData); @@ -225,6 +251,7 @@ private: T *m_RamData; T *m_VramData; MemoryDevice m_Device; + bool m_OwnsObjects; }; } // namespace uLib diff --git a/src/Core/Vector.h b/src/Core/Vector.h index 04d6342..0bd1944 100644 --- a/src/Core/Vector.h +++ b/src/Core/Vector.h @@ -23,156 +23,386 @@ //////////////////////////////////////////////////////////////////////////////*/ - - #ifndef U_CORE_VECTOR_H #define U_CORE_VECTOR_H -#include #include +#include +#include +#include + +#include -#include -#include #include - +#include +#include namespace uLib { -// Vector Implemetation ... wraps std::vector -template -class Vector : public std::vector > -{ - typedef std::vector< T,std::allocator > BaseClass; - typedef std::allocator Allocator; -public: - typedef T TypeData; - typedef __gnu_cxx::__normal_iterator Iterator; - typedef __gnu_cxx::__normal_iterator ConstIterator; - - typedef CommaInitializer< Vector , T > VectorCommaInit; - - Vector(unsigned int size) : BaseClass(size) {} - Vector(unsigned int size, T &value) : BaseClass(size,value) {} - Vector() : BaseClass(0) {} - - inline VectorCommaInit operator <<(T scalar) { - return VectorCommaInit(this, scalar); - } - - inline void PrintSelf(std::ostream &o); - - void remove_element(unsigned int index) { - std::swap(this->at(index),this->back()); - this->pop_back(); - } - - void remove_element(T &t) { - std::swap(t, this->back()); - this->pop_back(); - } - -}; - -template -void Vector::PrintSelf(std::ostream &o) -{ - o << " *** uLib Vector *** \n"; - o << " n. of items = " << this->size() << "\n"; - for(int i=0; i< this->size(); ++i) - o << (T)this->at(i) << " "; - o << "\n"; -} - -template -std::ostream & operator << (std::ostream &o, const Vector &v) { - for(int i=0; i< v.size(); ++i) - o << (T)v.at(i) << " "; - o << "\n"; - return o; -} - -template -std::ofstream & operator << (std::ofstream &o, const Vector &v) { - for(int i=0; i< v.size(); ++i) - o << (T)v.at(i) << " "; - return o; -} - - -template < typename T > -std::istream & operator >> (std::istream &is, Vector &v) { - T value; - while( is >> value ) { - if(is.fail()) v.push_back(0); - else v.push_back( value ); - } - return is; -} - - - -// Smart pointer Vector Implementation // - - -template -class SmartVector : public SmartPointer< Vector > { - typedef SmartPointer< Vector > Base; +// MetaAllocator Implementation ... +template class MetaAllocator { public: + using value_type = T; + using pointer = T *; + using const_pointer = const T *; + using reference = T &; + using const_reference = const T &; + using size_type = std::size_t; + using difference_type = std::ptrdiff_t; - SmartVector() : Base(new Vector()) { } - SmartVector( const SmartVector ©) : Base(copy) { } - SmartVector(unsigned int size) : Base(new Vector((int)size)) { } + template struct rebind { + using other = MetaAllocator; + }; - virtual ~SmartVector() {} + MetaAllocator() noexcept = default; - T& operator[](int p) { - return Base::get()->at(p); + template + constexpr MetaAllocator(const MetaAllocator &) noexcept {} + + T *allocate(std::size_t n) { + if (n == 0) + return nullptr; + + DataAllocator *da = new DataAllocator(n, false); + T *ptr = da->GetRAMData(); + + std::lock_guard lock(GetMutex()); + GetAllocationMap()[ptr] = da; + return ptr; } - void swap_elements(unsigned int first, unsigned int second) { - std::swap(Base::get()->at(first),Base::get()->at(second)); + void deallocate(T *p, std::size_t /*n*/) noexcept { + if (!p) + return; + + std::lock_guard lock(GetMutex()); + auto &map = GetAllocationMap(); + auto it = map.find(p); + if (it != map.end()) { + delete it->second; + map.erase(it); + } + } + + static DataAllocator *GetDataAllocator(T *p) { + if (!p) + return nullptr; + std::lock_guard lock(GetMutex()); + auto &map = GetAllocationMap(); + auto it = map.find(p); + if (it != map.end()) { + return it->second; + } + return nullptr; + } + +private: + static std::map *> &GetAllocationMap() { + static std::map *> allocMap; + return allocMap; + } + + static std::mutex &GetMutex() { + static std::mutex mtx; + return mtx; + } +}; + +template +bool operator==(const MetaAllocator &, const MetaAllocator &) { + return true; +} +template +bool operator!=(const MetaAllocator &, const MetaAllocator &) { + return false; +} + +// Vector Implemetation ... wraps std::vector +template class Vector : public std::vector> { + typedef std::vector> BaseClass; + typedef MetaAllocator Allocator; + +public: + typedef T TypeData; + typedef __gnu_cxx::__normal_iterator Iterator; + typedef __gnu_cxx::__normal_iterator ConstIterator; + + typedef CommaInitializer, T> VectorCommaInit; + typedef typename BaseClass::iterator iterator; + typedef typename BaseClass::const_iterator const_iterator; + typedef typename BaseClass::size_type size_type; + typedef typename BaseClass::reference reference; + + Vector(unsigned int size) : BaseClass(size) {} + Vector(unsigned int size, T &value) : BaseClass(size, value) {} + Vector() : BaseClass(0) {} + + inline VectorCommaInit operator<<(T scalar) { + return VectorCommaInit(this, scalar); + } + + void MoveToVRAM() { + if (auto alloc = MetaAllocator::GetDataAllocator(BaseClass::data())) { + alloc->MoveToVRAM(); + } + } + + void MoveToRAM() { + if (auto alloc = MetaAllocator::GetDataAllocator(BaseClass::data())) { + alloc->MoveToRAM(); + } + } + + T *GetVRAMData() { + if (auto alloc = MetaAllocator::GetDataAllocator(BaseClass::data())) { + return alloc->GetVRAMData(); + } + return nullptr; + } + + const T *GetVRAMData() const { + if (auto alloc = MetaAllocator::GetDataAllocator( + const_cast(BaseClass::data()))) { + return alloc->GetVRAMData(); + } + return nullptr; + } + + inline void PrintSelf(std::ostream &o); + + // Overrides for auto-sync // + T &operator[](size_t i) { + this->MoveToRAM(); + return BaseClass::operator[](i); + } + const T &operator[](size_t i) const { + const_cast(this)->MoveToRAM(); + return BaseClass::operator[](i); + } + T &at(size_t i) { + this->MoveToRAM(); + return BaseClass::at(i); + } + const T &at(size_t i) const { + const_cast(this)->MoveToRAM(); + return BaseClass::at(i); + } + T &front() { + this->MoveToRAM(); + return BaseClass::front(); + } + const T &front() const { + const_cast(this)->MoveToRAM(); + return BaseClass::front(); + } + T &back() { + this->MoveToRAM(); + return BaseClass::back(); + } + const T &back() const { + const_cast(this)->MoveToRAM(); + return BaseClass::back(); + } + T *data() noexcept { + this->MoveToRAM(); + return BaseClass::data(); + } + const T *data() const noexcept { + const_cast(this)->MoveToRAM(); + return BaseClass::data(); + } + Iterator begin() noexcept { + this->MoveToRAM(); + return BaseClass::begin(); + } + ConstIterator begin() const noexcept { + const_cast(this)->MoveToRAM(); + return BaseClass::begin(); + } + Iterator end() noexcept { + this->MoveToRAM(); + return BaseClass::end(); + } + ConstIterator end() const noexcept { + const_cast(this)->MoveToRAM(); + return BaseClass::end(); + } + auto rbegin() noexcept { + this->MoveToRAM(); + return BaseClass::rbegin(); + } + auto rbegin() const noexcept { + const_cast(this)->MoveToRAM(); + return BaseClass::rbegin(); + } + auto rend() noexcept { + this->MoveToRAM(); + return BaseClass::rend(); + } + auto rend() const noexcept { + const_cast(this)->MoveToRAM(); + return BaseClass::rend(); + } + + void push_back(const T &x) { + this->MoveToRAM(); + BaseClass::push_back(x); + } + void push_back(T &&x) { + this->MoveToRAM(); + BaseClass::push_back(std::move(x)); + } + template reference emplace_back(Args &&...args) { + this->MoveToRAM(); + return BaseClass::emplace_back(std::forward(args)...); + } + void pop_back() { + this->MoveToRAM(); + BaseClass::pop_back(); + } + + template + iterator emplace(const_iterator pos, Args &&...args) { + this->MoveToRAM(); + return BaseClass::emplace(pos, std::forward(args)...); + } + iterator insert(const_iterator pos, const T &x) { + this->MoveToRAM(); + return BaseClass::insert(pos, x); + } + iterator insert(const_iterator pos, T &&x) { + this->MoveToRAM(); + return BaseClass::insert(pos, std::move(x)); + } + iterator erase(const_iterator pos) { + this->MoveToRAM(); + return BaseClass::erase(pos); + } + iterator erase(const_iterator first, const_iterator last) { + this->MoveToRAM(); + return BaseClass::erase(first, last); + } + + void resize(size_t n) { + this->MoveToRAM(); + BaseClass::resize(n); + } + void resize(size_t n, const T &x) { + this->MoveToRAM(); + BaseClass::resize(n, x); + } + void reserve(size_t n) { + this->MoveToRAM(); + BaseClass::reserve(n); + } + void clear() noexcept { + this->MoveToRAM(); + BaseClass::clear(); + } + template void assign(InputIt first, InputIt last) { + this->MoveToRAM(); + BaseClass::assign(first, last); + } + void assign(size_type count, const T &value) { + this->MoveToRAM(); + BaseClass::assign(count, value); } void remove_element(unsigned int index) { - std::swap(Base::get()->at(index),Base::get()->back()); - Base::get()->pop_back(); + this->MoveToRAM(); + std::swap(this->at(index), this->back()); + this->pop_back(); + } + + void remove_element(T &t) { + this->MoveToRAM(); + std::swap(t, this->back()); + this->pop_back(); + } +}; + +template void Vector::PrintSelf(std::ostream &o) { + o << " *** uLib Vector *** \n"; + o << " n. of items = " << this->size() << "\n"; + for (int i = 0; i < this->size(); ++i) + o << (T)this->at(i) << " "; + o << "\n"; +} + +template +std::ostream &operator<<(std::ostream &o, const Vector &v) { + for (int i = 0; i < v.size(); ++i) + o << (T)v.at(i) << " "; + o << "\n"; + return o; +} + +template +std::ofstream &operator<<(std::ofstream &o, const Vector &v) { + for (int i = 0; i < v.size(); ++i) + o << (T)v.at(i) << " "; + return o; +} + +template std::istream &operator>>(std::istream &is, Vector &v) { + T value; + while (is >> value) { + if (is.fail()) + v.push_back(0); + else + v.push_back(value); + } + return is; +} + +// Smart pointer Vector Implementation // + +template class SmartVector : public SmartPointer> { + typedef SmartPointer> Base; + +public: + SmartVector() : Base(new Vector()) {} + SmartVector(const SmartVector ©) : Base(copy) {} + SmartVector(unsigned int size) : Base(new Vector((int)size)) {} + + virtual ~SmartVector() {} + + T &operator[](int p) { return Base::get()->at(p); } + + void swap_elements(unsigned int first, unsigned int second) { + std::swap(Base::get()->at(first), Base::get()->at(second)); + } + + void remove_element(unsigned int index) { + std::swap(Base::get()->at(index), Base::get()->back()); + Base::get()->pop_back(); } void remove_element(T &t) { std::swap(t, Base::get()->back()); Base::get()->pop_back(); - } + } }; - - - // ------ Utils ------------------------------------------------------------- // - - // RIFARE con iteratore ! template -inline const unsigned long -VectorSplice(const _Tp &_it, const _Tp &_end, const float value, _CmpT _comp) -{ - _Tp it = _it; - _Tp end = _end-1; - for(it; it != end;) - { - if (_comp(*it,value)) ++it; - else if(_comp(*end,value)) std::swap(*it,*end--); - else --end; - } - return it - _it; +inline unsigned long VectorSplice(const _Tp &_it, const _Tp &_end, + const float value, _CmpT _comp) { + _Tp it = _it; + _Tp end = _end - 1; + for (; it != end;) { + if (_comp(*it, value)) + ++it; + else if (_comp(*end, value)) + std::swap(*it, *end--); + else + --end; + } + return it - _it; } - - -} // uLib - - - - +} // namespace uLib #endif // VECTOR_H diff --git a/src/Core/test_meta_allocator.cpp b/src/Core/test_meta_allocator.cpp new file mode 100644 index 0000000..07571ac --- /dev/null +++ b/src/Core/test_meta_allocator.cpp @@ -0,0 +1,31 @@ +#include +#include + +int main() { + uLib::Vector v; + v.push_back(1); + v.push_back(2); + v.push_back(3); + + std::cout << "RAM Vector elements: "; + for (int i = 0; i < v.size(); ++i) { + std::cout << v[i] << " "; + } + std::cout << std::endl; + +#ifdef USE_CUDA + std::cout << "Moving to VRAM..." << std::endl; + v.MoveToVRAM(); + int *vram_ptr = v.GetVRAMData(); + if (vram_ptr) { + std::cout << "Successfully got VRAM pointer!" << std::endl; + } else { + std::cout << "Failed to get VRAM pointer!" << std::endl; + } + + std::cout << "Moving back to RAM..." << std::endl; + v.MoveToRAM(); +#endif + + return 0; +} diff --git a/src/Core/testing/CMakeLists.txt b/src/Core/testing/CMakeLists.txt index ef61f24..82dc679 100644 --- a/src/Core/testing/CMakeLists.txt +++ b/src/Core/testing/CMakeLists.txt @@ -20,6 +20,7 @@ set( TESTS TypeIntrospectionTraversal OptionsTest PingPongTest + VectorMetaAllocatorTest ) set(LIBRARIES diff --git a/src/Core/testing/VectorMetaAllocatorTest.cpp b/src/Core/testing/VectorMetaAllocatorTest.cpp new file mode 100644 index 0000000..c75a643 --- /dev/null +++ b/src/Core/testing/VectorMetaAllocatorTest.cpp @@ -0,0 +1,71 @@ +/*////////////////////////////////////////////////////////////////////////////// +// CMT Cosmic Muon Tomography project ////////////////////////////////////////// +//////////////////////////////////////////////////////////////////////////////// + + Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova + All rights reserved + + Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it > + +//////////////////////////////////////////////////////////////////////////////*/ + +#include "testing-prototype.h" +#include + +int main() { + BEGIN_TESTING(VectorMetaAllocator); + + uLib::Vector v; + std::cout << "Pushing elements...\n"; + v << 1, 2, 3, 4, 5; + + std::cout << "Initial RAM contents: "; + for (size_t i = 0; i < v.size(); ++i) { + std::cout << v[i] << " "; + if (v[i] != (int)(i + 1)) { + std::cout << "\nError: Value mismatch at index " << i << "\n"; + exit(1); + } + } + std::cout << "\n"; + +#ifdef USE_CUDA + std::cout << "Moving to VRAM...\n"; + v.MoveToVRAM(); + + int *vram_ptr = v.GetVRAMData(); + if (vram_ptr) { + std::cout << "Successfully obtained VRAM pointer: " << vram_ptr << "\n"; + } else { + std::cout << "Error: Failed to obtain VRAM pointer!\n"; + exit(1); + } + + std::cout << "Moving back to RAM...\n"; + v.MoveToRAM(); + + std::cout << "RAM contents after VRAM trip: "; + for (size_t i = 0; i < v.size(); ++i) { + std::cout << v[i] << " "; + if (v[i] != (int)(i + 1)) { + std::cout << "\nError: Data corrupted after RAM->VRAM->RAM trip at index " + << i << "\n"; + exit(1); + } + } + std::cout << "\n"; +#else + std::cout << "USE_CUDA not defined, skipping VRAM tests.\n"; +#endif + + std::cout << "Scaling vector...\n"; + for (size_t i = 0; i < v.size(); ++i) + v[i] *= 10; + + std::cout << "Final contents: "; + for (size_t i = 0; i < v.size(); ++i) + std::cout << v[i] << " "; + std::cout << "\n"; + + END_TESTING; +} diff --git a/src/Core/testing/VectorTest.cpp b/src/Core/testing/VectorTest.cpp index 6fee192..14324f4 100644 --- a/src/Core/testing/VectorTest.cpp +++ b/src/Core/testing/VectorTest.cpp @@ -23,62 +23,47 @@ //////////////////////////////////////////////////////////////////////////////*/ - - -#include #include "testing-prototype.h" +#include #include -template < typename T > -struct __Cmp { - bool operator()(const T &data, const float value) { - return data <= value; - } +template struct __Cmp { + bool operator()(const T &data, const float value) { return data <= value; } }; +template +inline const unsigned long VectorSplice(const _Tp &_it, const _Tp &_end, + const float value, _CmpT _comp) { - - -template -inline const unsigned long -VectorSplice(const _Tp &_it, const _Tp &_end, const float value, _CmpT _comp) - { - - _Tp it = _it; - _Tp end = _end-1; - for(it; it != end; ) - { - if ( _comp(*it, value) ) it++; - else if( _comp(*end, value) ) - { - std::swap(*it,*end--); - } - else --end; - } - return it - _it; + _Tp it = _it; + _Tp end = _end - 1; + for (it; it != end;) { + if (_comp(*it, value)) + it++; + else if (_comp(*end, value)) { + std::swap(*it, *end--); + } else + --end; + } + return it - _it; } +int main() { + BEGIN_TESTING(Vector); -int main() -{ - BEGIN_TESTING(Vector); + uLib::Vector v; + v << 5, 4, 3, 2, 6, 1, 2, 3, 65, 7, 32, 23, 4, 3, 45, 4, 34, 3, 4, 4, 3, 3, 4, + 2, 2, 3; - uLib::Vector v; - v << 5,4,3,2,6,1,2,3,65,7,32,23,4,3,45,4,34,3,4,4,3,3,4,2,2,3; + int id = ::VectorSplice(v.begin(), v.end(), 3, __Cmp()); + std::cout << "id: " << id << "\n"; + std::cout << "vector: "; + for (uLib::Vector::Iterator it = v.begin(); it != v.end(); it++) + std::cout << *it << " "; + std::cout << std::endl; + // std::sort(v.begin(),v.end(),LT()); - - int id = VectorSplice(v.begin(),v.end(),3,__Cmp()); - - std::cout << "id: " << id << "\n"; - std::cout << "vector: "; - for(uLib::Vector::Iterator it = v.begin(); it!=v.end(); it++) - std::cout << *it <<" "; - std::cout << std::endl; -// std::sort(v.begin(),v.end(),LT()); - - - END_TESTING; + END_TESTING; } - diff --git a/src/Math/VoxImage.h b/src/Math/VoxImage.h index 7c98d89..7edd3c4 100644 --- a/src/Math/VoxImage.h +++ b/src/Math/VoxImage.h @@ -34,7 +34,7 @@ #include #include -#include "Math/DataAllocator.h" +#include namespace uLib { diff --git a/src/Math/VoxRaytracer.h b/src/Math/VoxRaytracer.h index 39e8ea7..098c7da 100644 --- a/src/Math/VoxRaytracer.h +++ b/src/Math/VoxRaytracer.h @@ -26,7 +26,8 @@ #ifndef VOXRAYTRACER_H #define VOXRAYTRACER_H -#include "Math/DataAllocator.h" +#include +#include #include #include @@ -56,9 +57,9 @@ public: void AppendRay(const RayData &in); - inline DataAllocator &Data() { return this->m_Data; } + inline uLib::Vector &Data() { return this->m_Data; } - inline const DataAllocator &Data() const { return this->m_Data; } + inline const uLib::Vector &Data() const { return this->m_Data; } inline size_t Count() const { return this->m_Count; } @@ -71,7 +72,7 @@ public: void PrintSelf(std::ostream &o); private: - DataAllocator m_Data; + uLib::Vector m_Data; Scalarf m_TotalLength; size_t m_Count; }; From e69b29a259110089cc1e7058524643e9a4057367 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Thu, 5 Mar 2026 09:16:15 +0000 Subject: [PATCH 12/19] add first python bindings --- CMakeLists.txt | 3 + conanfile.txt | 1 + src/Python/CMakeLists.txt | 44 +++++++ src/Python/core_bindings.cpp | 30 +++++ src/Python/math_bindings.cpp | 152 +++++++++++++++++++++++++ src/Python/module.cpp | 18 +++ src/Python/testing/core_pybind_test.py | 33 ++++++ src/Python/testing/math_pybind_test.py | 62 ++++++++++ src/Python/testing/pybind_test.py | 46 ++++++++ 9 files changed, 389 insertions(+) create mode 100644 src/Python/CMakeLists.txt create mode 100644 src/Python/core_bindings.cpp create mode 100644 src/Python/math_bindings.cpp create mode 100644 src/Python/module.cpp create mode 100644 src/Python/testing/core_pybind_test.py create mode 100644 src/Python/testing/math_pybind_test.py create mode 100644 src/Python/testing/pybind_test.py diff --git a/CMakeLists.txt b/CMakeLists.txt index c090c3e..c2eda1d 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -120,6 +120,7 @@ include(${ROOT_USE_FILE}) find_package(VTK REQUIRED) # include(${VTK_USE_FILE}) +find_package(pybind11 REQUIRED) option(CENTOS_SUPPORT "VTK definitions for CentOS" OFF) @@ -212,6 +213,8 @@ add_subdirectory(${SRC_DIR}/Root) include_directories(${SRC_DIR}/Vtk) add_subdirectory(${SRC_DIR}/Vtk) +add_subdirectory(${SRC_DIR}/Python) + #add_subdirectory("${SRC_DIR}/utils/make_recipe") ## Documentation and packages diff --git a/conanfile.txt b/conanfile.txt index f8fb77a..8af9f6f 100644 --- a/conanfile.txt +++ b/conanfile.txt @@ -1,6 +1,7 @@ [requires] eigen/3.4.0 boost/1.83.0 +pybind11/3.0.2 [generators] CMakeDeps diff --git a/src/Python/CMakeLists.txt b/src/Python/CMakeLists.txt new file mode 100644 index 0000000..0ef8874 --- /dev/null +++ b/src/Python/CMakeLists.txt @@ -0,0 +1,44 @@ +set(HEADERS "") + +set(SOURCES + module.cpp + core_bindings.cpp + math_bindings.cpp +) + +# Use pybind11 to add the python module +pybind11_add_module(uLib_python module.cpp core_bindings.cpp math_bindings.cpp) + +# Link against our C++ libraries +target_link_libraries(uLib_python PRIVATE + ${PACKAGE_LIBPREFIX}Core + ${PACKAGE_LIBPREFIX}Math +) + +# Include directories from Core and Math are automatically handled if target_include_directories were set appropriately, +# but we might need to manually include them if they aren't INTERFACE includes. +target_include_directories(uLib_python PRIVATE + ${PROJECT_SOURCE_DIR}/src + ${PROJECT_BINARY_DIR} +) + +# --- Python Tests ---------------------------------------------------------- # + +if(BUILD_TESTING) + find_package(Python3 COMPONENTS Interpreter REQUIRED) + + add_test(NAME pybind_general + COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/pybind_test.py) + set_tests_properties(pybind_general PROPERTIES + ENVIRONMENT "PYTHONPATH=$") + + add_test(NAME pybind_core + COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/core_pybind_test.py) + set_tests_properties(pybind_core PROPERTIES + ENVIRONMENT "PYTHONPATH=$") + + add_test(NAME pybind_math + COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/math_pybind_test.py) + set_tests_properties(pybind_math PROPERTIES + ENVIRONMENT "PYTHONPATH=$") +endif() diff --git a/src/Python/core_bindings.cpp b/src/Python/core_bindings.cpp new file mode 100644 index 0000000..9e8e19c --- /dev/null +++ b/src/Python/core_bindings.cpp @@ -0,0 +1,30 @@ +#include +#include + +#include "Core/Object.h" +#include "Core/Timer.h" +#include "Core/Options.h" +#include "Core/Uuid.h" + +namespace py = pybind11; +using namespace uLib; + +void init_core(py::module_ &m) { + py::class_>(m, "Object") + .def(py::init<>()) + .def("DeepCopy", &Object::DeepCopy); + + py::class_(m, "Timer") + .def(py::init<>()) + .def("Start", &Timer::Start) + .def("StopWatch", &Timer::StopWatch); + + py::class_(m, "Options") + .def(py::init(), py::arg("str") = "Program options") + .def("parse_config_file", py::overload_cast(&Options::parse_config_file)) + .def("save_config_file", &Options::save_config_file) + .def("count", &Options::count); + + py::class_(m, "TypeRegister") + .def_static("Controller", &TypeRegister::Controller, py::return_value_policy::reference_internal); +} diff --git a/src/Python/math_bindings.cpp b/src/Python/math_bindings.cpp new file mode 100644 index 0000000..0f4434f --- /dev/null +++ b/src/Python/math_bindings.cpp @@ -0,0 +1,152 @@ +#include +#include +#include + +#include "Math/Dense.h" +#include "Math/Transform.h" +#include "Math/Geometry.h" +#include "Math/ContainerBox.h" +#include "Math/StructuredData.h" +#include "Math/StructuredGrid.h" +#include "Math/Structured2DGrid.h" +#include "Math/Structured4DGrid.h" +#include "Math/TriangleMesh.h" +#include "Math/VoxRaytracer.h" +#include "Math/Accumulator.h" + +namespace py = pybind11; +using namespace uLib; + +void init_math(py::module_ &m) { + + // Math/Transform.h + py::class_(m, "AffineTransform") + .def(py::init<>()) + .def("GetWorldMatrix", &AffineTransform::GetWorldMatrix) + .def("SetPosition", &AffineTransform::SetPosition) + .def("GetPosition", &AffineTransform::GetPosition) + .def("Translate", &AffineTransform::Translate) + .def("Scale", &AffineTransform::Scale) + .def("SetRotation", &AffineTransform::SetRotation) + .def("GetRotation", &AffineTransform::GetRotation) + .def("Rotate", py::overload_cast(&AffineTransform::Rotate)) + .def("Rotate", py::overload_cast(&AffineTransform::Rotate)) + .def("EulerYZYRotate", &AffineTransform::EulerYZYRotate) + .def("FlipAxes", &AffineTransform::FlipAxes); + + // Math/Geometry.h + py::class_(m, "Geometry") + .def(py::init<>()) + .def("GetWorldPoint", py::overload_cast(&Geometry::GetWorldPoint, py::const_)) + .def("GetLocalPoint", py::overload_cast(&Geometry::GetLocalPoint, py::const_)); + + // Math/ContainerBox.h + py::class_(m, "ContainerBox") + .def(py::init<>()) + .def("SetOrigin", &ContainerBox::SetOrigin) + .def("GetOrigin", &ContainerBox::GetOrigin) + .def("SetSize", &ContainerBox::SetSize) + .def("GetSize", &ContainerBox::GetSize) + .def("GetWorldMatrix", &ContainerBox::GetWorldMatrix) + .def("GetWorldPoint", py::overload_cast(&ContainerBox::GetWorldPoint, py::const_)) + .def("GetLocalPoint", py::overload_cast(&ContainerBox::GetLocalPoint, py::const_)); + + // Math/StructuredData.h + py::enum_(m, "StructuredDataOrder") + .value("CustomOrder", StructuredData::CustomOrder) + .value("XYZ", StructuredData::XYZ) + .value("XZY", StructuredData::XZY) + .value("YXZ", StructuredData::YXZ) + .value("YZX", StructuredData::YZX) + .value("ZXY", StructuredData::ZXY) + .value("ZYX", StructuredData::ZYX) + .export_values(); + + py::class_(m, "StructuredData") + .def(py::init()) + .def("GetDims", &StructuredData::GetDims) + .def("SetDims", &StructuredData::SetDims) + .def("GetIncrements", &StructuredData::GetIncrements) + .def("SetIncrements", &StructuredData::SetIncrements) + .def("SetDataOrder", &StructuredData::SetDataOrder) + .def("GetDataOrder", &StructuredData::GetDataOrder) + .def("IsInsideGrid", &StructuredData::IsInsideGrid) + .def("Map", &StructuredData::Map) + .def("UnMap", &StructuredData::UnMap); + + // Math/StructuredGrid.h + py::class_(m, "StructuredGrid") + .def(py::init()) + .def("SetSpacing", &StructuredGrid::SetSpacing) + .def("GetSpacing", &StructuredGrid::GetSpacing) + .def("IsInsideBounds", &StructuredGrid::IsInsideBounds) + .def("Find", [](StructuredGrid &self, Vector3f pt) { + return self.Find(HPoint3f(pt)); + }); + + // Math/Structured2DGrid.h + py::class_(m, "Structured2DGrid") + .def(py::init<>()) + .def("SetDims", &Structured2DGrid::SetDims) + .def("GetDims", &Structured2DGrid::GetDims) + .def("IsInsideGrid", &Structured2DGrid::IsInsideGrid) + .def("Map", &Structured2DGrid::Map) + .def("UnMap", &Structured2DGrid::UnMap) + .def("SetPhysicalSpace", &Structured2DGrid::SetPhysicalSpace) + .def("GetSpacing", &Structured2DGrid::GetSpacing) + .def("GetOrigin", &Structured2DGrid::GetOrigin) + .def("IsInsideBounds", &Structured2DGrid::IsInsideBounds) + .def("PhysicsToUnitSpace", &Structured2DGrid::PhysicsToUnitSpace) + .def("UnitToPhysicsSpace", &Structured2DGrid::UnitToPhysicsSpace) + .def("SetDebug", &Structured2DGrid::SetDebug); + + // Math/Structured4DGrid.h + py::class_(m, "Structured4DGrid") + .def(py::init<>()) + .def("SetDims", &Structured4DGrid::SetDims) + .def("GetDims", &Structured4DGrid::GetDims) + .def("IsInsideGrid", &Structured4DGrid::IsInsideGrid) + .def("Map", &Structured4DGrid::Map) + .def("UnMap", &Structured4DGrid::UnMap) + .def("SetPhysicalSpace", &Structured4DGrid::SetPhysicalSpace) + .def("GetSpacing", &Structured4DGrid::GetSpacing) + .def("GetOrigin", &Structured4DGrid::GetOrigin) + .def("IsInsideBounds", &Structured4DGrid::IsInsideBounds) + .def("PhysicsToUnitSpace", &Structured4DGrid::PhysicsToUnitSpace) + .def("UnitToPhysicsSpace", &Structured4DGrid::UnitToPhysicsSpace) + .def("SetDebug", &Structured4DGrid::SetDebug); + + // Math/TriangleMesh.h + py::class_(m, "TriangleMesh") + .def(py::init<>()) + .def("AddPoint", &TriangleMesh::AddPoint) + .def("AddTriangle", py::overload_cast(&TriangleMesh::AddTriangle)) + .def("Points", &TriangleMesh::Points, py::return_value_policy::reference_internal) + .def("Triangles", &TriangleMesh::Triangles, py::return_value_policy::reference_internal); + + // Math/VoxRaytracer.h + py::class_(m, "VoxRaytracerRayDataElement") + .def(py::init<>()) + .def_readwrite("vox_id", &VoxRaytracer::RayData::Element::vox_id) + .def_readwrite("L", &VoxRaytracer::RayData::Element::L); + + py::class_(m, "VoxRaytracerRayData") + .def(py::init<>()) + .def("AppendRay", &VoxRaytracer::RayData::AppendRay) + .def("Count", &VoxRaytracer::RayData::Count) + .def("TotalLength", &VoxRaytracer::RayData::TotalLength) + .def("SetCount", &VoxRaytracer::RayData::SetCount) + .def("SetTotalLength", &VoxRaytracer::RayData::SetTotalLength); + + py::class_(m, "VoxRaytracer") + .def(py::init(), py::keep_alive<1, 2>()) + .def("GetImage", &VoxRaytracer::GetImage, py::return_value_policy::reference_internal); + + // Math/Accumulator.h + py::class_>(m, "Accumulator_Mean_f") + .def(py::init<>()) + .def("AddPass", &Accumulator_Mean::AddPass) + .def("__call__", py::overload_cast(&Accumulator_Mean::operator())) + .def("__call__", py::overload_cast<>(&Accumulator_Mean::operator(), py::const_)); + +} diff --git a/src/Python/module.cpp b/src/Python/module.cpp new file mode 100644 index 0000000..0cef30d --- /dev/null +++ b/src/Python/module.cpp @@ -0,0 +1,18 @@ +#include + +namespace py = pybind11; + +void init_core(py::module_ &m); +void init_math(py::module_ &m); + +PYBIND11_MODULE(uLib_python, m) { + m.doc() = "Python bindings for uLib Core and Math libraries"; + + // Core submodule + py::module_ core = m.def_submodule("Core", "Core library bindings"); + init_core(core); + + // Math submodule + py::module_ math = m.def_submodule("Math", "Math library bindings"); + init_math(math); +} diff --git a/src/Python/testing/core_pybind_test.py b/src/Python/testing/core_pybind_test.py new file mode 100644 index 0000000..216a7b4 --- /dev/null +++ b/src/Python/testing/core_pybind_test.py @@ -0,0 +1,33 @@ +import sys +import os +import unittest +import time + +import uLib_python + +class TestCoreOptions(unittest.TestCase): + def test_options(self): + opt = uLib_python.Core.Options("Test Options") + + # Test basic config file parsing + with open("test_configuration.ini", "w") as f: + f.write("[Section]\n") + + opt.parse_config_file("test_configuration.ini") + os.remove("test_configuration.ini") + +class TestCoreObject(unittest.TestCase): + def test_object(self): + obj = uLib_python.Core.Object() + self.assertIsNotNone(obj) + +class TestCoreTimer(unittest.TestCase): + def test_timer(self): + timer = uLib_python.Core.Timer() + timer.Start() + time.sleep(0.1) + val = timer.StopWatch() + self.assertGreater(val, 0.09) + +if __name__ == '__main__': + unittest.main() diff --git a/src/Python/testing/math_pybind_test.py b/src/Python/testing/math_pybind_test.py new file mode 100644 index 0000000..795252c --- /dev/null +++ b/src/Python/testing/math_pybind_test.py @@ -0,0 +1,62 @@ +import sys +import os +import unittest +import numpy as np + +import uLib_python + +def vector4f0(v, target): + diff = np.array(v) - np.array(target) + diff[3] = 0 # ignoring w + return np.all(np.abs(diff) < 0.001) + +class TestMathGeometry(unittest.TestCase): + def test_geometry(self): + Geo = uLib_python.Math.Geometry() + + Geo.SetPosition([1, 1, 1]) + + pt = Geo.GetLocalPoint([2, 3, 2, 1]) + wp = Geo.GetWorldPoint(pt) + + self.assertTrue(vector4f0(wp, [2, 3, 2, 1])) + + Geo.Scale([2, 2, 2]) + wp = Geo.GetWorldPoint([1, 1, 1, 1]) + self.assertTrue(vector4f0(wp, [3, 3, 3, 1])) + +class TestMathContainerBox(unittest.TestCase): + def test_container_box_local(self): + Cnt = uLib_python.Math.ContainerBox() + Cnt.SetOrigin([-1, -1, -1]) + Cnt.SetSize([2, 2, 2]) + + size = Cnt.GetSize() + self.assertTrue(np.allclose(size, [2, 2, 2])) + + def test_container_box_global(self): + Box = uLib_python.Math.ContainerBox() + Box.SetPosition([1, 1, 1]) + Box.SetSize([2, 2, 2]) + + pt = Box.GetLocalPoint([2, 3, 2, 1]) + wp = Box.GetWorldPoint(pt) + self.assertTrue(vector4f0(wp, [2, 3, 2, 1])) + +class TestMathStructuredGrid(unittest.TestCase): + def test_structured_grid(self): + grid = uLib_python.Math.StructuredGrid([10, 10, 10]) + grid.SetSpacing([1, 1, 1]) + + spacing = grid.GetSpacing() + self.assertTrue(np.allclose(spacing, [1, 1, 1])) + +class TestMathAccumulator(unittest.TestCase): + def test_accumulator_mean(self): + acc = uLib_python.Math.Accumulator_Mean_f() + acc(10.0) + acc(20.0) + self.assertAlmostEqual(acc(), 15.0) + +if __name__ == '__main__': + unittest.main() diff --git a/src/Python/testing/pybind_test.py b/src/Python/testing/pybind_test.py new file mode 100644 index 0000000..ced2d27 --- /dev/null +++ b/src/Python/testing/pybind_test.py @@ -0,0 +1,46 @@ +import sys +import os + +import uLib_python + +def test_core(): + print("Testing Core module...") + obj = uLib_python.Core.Object() + print("Core Object created:", obj) + + timer = uLib_python.Core.Timer() + timer.Start() + print("Core Timer started") + + options = uLib_python.Core.Options("Test Options") + print("Core Options created:", options) + +def test_math(): + print("Testing Math module...") + + # Test AffineTransform + transform = uLib_python.Math.AffineTransform() + print("AffineTransform created") + + # Test Geometry + geom = uLib_python.Math.Geometry() + print("Geometry created") + + # Test StructuredData + data = uLib_python.Math.StructuredData([10, 10, 10]) + print("StructuredData created with dims:", data.GetDims()) + + # Test Structured2DGrid + grid2d = uLib_python.Math.Structured2DGrid() + grid2d.SetDims([100, 100]) + print("Structured2DGrid created with dims:", grid2d.GetDims()) + + # Test TriangleMesh + mesh = uLib_python.Math.TriangleMesh() + print("TriangleMesh created") + + print("All tests passed successfully!") + +if __name__ == "__main__": + test_core() + test_math() From 647d0caa1cd15cc1ab33723ab95141be4e7f16c9 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Thu, 5 Mar 2026 11:39:27 +0000 Subject: [PATCH 13/19] feat: Add Python packaging infrastructure and comprehensive bindings for math and vector types. --- pyproject.toml | 10 ++ setup.py | 52 +++++++ src/Core/CMakeLists.txt | 33 ++++- src/Core/Vector.h | 5 + src/Core/test_meta_allocator.cpp | 31 ---- src/Math/Dense.h | 31 ++-- src/Math/VoxImage.h | 2 +- src/Python/CMakeLists.txt | 8 + src/Python/math_bindings.cpp | 194 ++++++++++++++++++++++--- src/Python/testing/math_pybind_test.py | 66 +++++++++ 10 files changed, 372 insertions(+), 60 deletions(-) create mode 100644 pyproject.toml create mode 100644 setup.py delete mode 100644 src/Core/test_meta_allocator.cpp diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..1b54914 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,10 @@ + +[build-system] +requires = [ + "setuptools>=42", + "wheel", + "pybind11>=2.6.0", + "cmake>=3.12", + "ninja"] + +build-backend = "setuptools.build_meta" diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..c6e6e20 --- /dev/null +++ b/setup.py @@ -0,0 +1,52 @@ +import os +import re +import subprocess +import sys + +from setuptools import Extension, setup +from setuptools.command.build_ext import build_ext + +class CMakeExtension(Extension): + def __init__(self, name, sourcedir=""): + Extension.__init__(self, name, sources=[]) + self.sourcedir = os.path.abspath(sourcedir) + +class CMakeBuild(build_ext): + def build_extension(self, ext): + extdir = os.path.abspath(os.path.dirname(self.get_ext_fullpath(ext.name))) + + if not extdir.endswith(os.path.sep): + extdir += os.path.sep + + debug = int(os.environ.get("DEBUG", 0)) if self.debug is None else self.debug + cfg = "Debug" if debug else "Release" + + cmake_args = [ + f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={extdir}", + f"-DPYTHON_EXECUTABLE={sys.executable}", + f"-DCMAKE_BUILD_TYPE={cfg}", + f"-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE", + f"-DCMAKE_INSTALL_RPATH=$ORIGIN", + "-DUSE_CUDA=OFF", + "-G", "Unix Makefiles", + ] + build_args = [] + + build_temp = os.path.join(self.build_temp, ext.name) + if not os.path.exists(build_temp): + os.makedirs(build_temp) + + subprocess.check_call(["cmake", ext.sourcedir] + cmake_args, cwd=build_temp) + subprocess.check_call(["cmake", "--build", ".", "--target", "uLib_python"] + build_args, cwd=build_temp) + +setup( + name="ulib", + version="0.6.0", + author="Andrea Rigoni Garola", + author_email="andrea.rigoni@pd.infn.it", + description="CMT Cosmic Muon Tomography project uLib python bindings", + ext_modules=[CMakeExtension("uLib_python")], + cmdclass={"build_ext": CMakeBuild}, + zip_safe=False, + python_requires=">=3.6", +) diff --git a/src/Core/CMakeLists.txt b/src/Core/CMakeLists.txt index 586f2ef..d337c97 100644 --- a/src/Core/CMakeLists.txt +++ b/src/Core/CMakeLists.txt @@ -1,7 +1,36 @@ -set(HEADERS Archives.h Array.h Collection.h DataAllocator.h Debug.h Export.h Function.h Macros.h Mpl.h Object.h Options.h Serializable.h Signal.h Singleton.h SmartPointer.h StaticInterface.h StringReader.h Types.h Uuid.h Vector.h) +set(HEADERS + Archives.h + Array.h + Collection.h + DataAllocator.h + Debug.h + Export.h + Function.h + Macros.h + Mpl.h + Object.h + Options.h + Serializable.h + Signal.h + Singleton.h + SmartPointer.h + StaticInterface.h + StringReader.h + Types.h + Uuid.h + Vector.h +) -set(SOURCES Archives.cpp Debug.cpp Object.cpp Options.cpp Serializable.cpp Signal.cpp Uuid.cpp) +set(SOURCES + Archives.cpp + Debug.cpp + Object.cpp + Options.cpp + Serializable.cpp + Signal.cpp + Uuid.cpp +) set(LIBRARIES Boost::program_options Boost::serialization) diff --git a/src/Core/Vector.h b/src/Core/Vector.h index 0bd1944..2622816 100644 --- a/src/Core/Vector.h +++ b/src/Core/Vector.h @@ -274,6 +274,11 @@ public: this->MoveToRAM(); return BaseClass::insert(pos, std::move(x)); } + template + iterator insert(const_iterator pos, InputIt first, InputIt last) { + this->MoveToRAM(); + return BaseClass::insert(pos, first, last); + } iterator erase(const_iterator pos) { this->MoveToRAM(); return BaseClass::erase(pos); diff --git a/src/Core/test_meta_allocator.cpp b/src/Core/test_meta_allocator.cpp deleted file mode 100644 index 07571ac..0000000 --- a/src/Core/test_meta_allocator.cpp +++ /dev/null @@ -1,31 +0,0 @@ -#include -#include - -int main() { - uLib::Vector v; - v.push_back(1); - v.push_back(2); - v.push_back(3); - - std::cout << "RAM Vector elements: "; - for (int i = 0; i < v.size(); ++i) { - std::cout << v[i] << " "; - } - std::cout << std::endl; - -#ifdef USE_CUDA - std::cout << "Moving to VRAM..." << std::endl; - v.MoveToVRAM(); - int *vram_ptr = v.GetVRAMData(); - if (vram_ptr) { - std::cout << "Successfully got VRAM pointer!" << std::endl; - } else { - std::cout << "Failed to get VRAM pointer!" << std::endl; - } - - std::cout << "Moving back to RAM..." << std::endl; - v.MoveToRAM(); -#endif - - return 0; -} diff --git a/src/Math/Dense.h b/src/Math/Dense.h index 7c4b587..ef302a3 100644 --- a/src/Math/Dense.h +++ b/src/Math/Dense.h @@ -114,6 +114,21 @@ typedef unsigned long Scalarul; typedef float Scalarf; typedef double Scalard; +typedef Eigen::Matrix Vector1i; +typedef Eigen::Vector2i Vector2i; +typedef Eigen::Vector3i Vector3i; +typedef Eigen::Vector4i Vector4i; + +typedef Eigen::Matrix Vector1f; +typedef Eigen::Vector2f Vector2f; +typedef Eigen::Vector3f Vector3f; +typedef Eigen::Vector4f Vector4f; + +typedef Eigen::Matrix Vector1d; +typedef Eigen::Vector2d Vector2d; +typedef Eigen::Vector3d Vector3d; +typedef Eigen::Vector4d Vector4d; + typedef Eigen::Matrix Matrix1i; typedef Eigen::Matrix2i Matrix2i; typedef Eigen::Matrix3i Matrix3i; @@ -124,15 +139,10 @@ typedef Eigen::Matrix2f Matrix2f; typedef Eigen::Matrix3f Matrix3f; typedef Eigen::Matrix4f Matrix4f; -typedef Eigen::Matrix Vector1i; -typedef Eigen::Vector2i Vector2i; -typedef Eigen::Vector3i Vector3i; -typedef Eigen::Vector4i Vector4i; - -typedef Eigen::Matrix Vector1f; -typedef Eigen::Vector2f Vector2f; -typedef Eigen::Vector3f Vector3f; -typedef Eigen::Vector4f Vector4f; +typedef Eigen::Matrix Matrix1d; +typedef Eigen::Matrix2d Matrix2d; +typedef Eigen::Matrix3d Matrix3d; +typedef Eigen::Matrix4d Matrix4d; //////////////////////////////////////////////////////////////////////////////// // Vector String interaction /////////////////////////////////////////////////// @@ -188,6 +198,9 @@ public: typedef Eigen::Matrix BaseClass; _HPoint3f() : BaseClass(0, 0, 0, p) {} + _HPoint3f(int rows, int cols) : BaseClass() { + this->operator()(3) = p; + } _HPoint3f(float x, float y, float z) : BaseClass(x, y, z, p) {} _HPoint3f(Vector3f &in) : BaseClass(in.homogeneous()) { this->operator()(3) = p; diff --git a/src/Math/VoxImage.h b/src/Math/VoxImage.h index 7edd3c4..eba6125 100644 --- a/src/Math/VoxImage.h +++ b/src/Math/VoxImage.h @@ -70,8 +70,8 @@ public: int ImportFromVti(const char *file, bool density_type = 0); -protected: virtual ~VoxImage() {} +protected: VoxImage(const Vector3i &size) : BaseClass(size) {} }; diff --git a/src/Python/CMakeLists.txt b/src/Python/CMakeLists.txt index 0ef8874..095031f 100644 --- a/src/Python/CMakeLists.txt +++ b/src/Python/CMakeLists.txt @@ -22,6 +22,14 @@ target_include_directories(uLib_python PRIVATE ${PROJECT_BINARY_DIR} ) +# Install uLib_python within the uLib install target +install(TARGETS uLib_python + EXPORT "${PROJECT_NAME}Targets" + RUNTIME DESTINATION ${INSTALL_BIN_DIR} COMPONENT bin + LIBRARY DESTINATION ${INSTALL_LIB_DIR} COMPONENT lib + ARCHIVE DESTINATION ${INSTALL_LIB_DIR} COMPONENT lib +) + # --- Python Tests ---------------------------------------------------------- # if(BUILD_TESTING) diff --git a/src/Python/math_bindings.cpp b/src/Python/math_bindings.cpp index 0f4434f..fcb2394 100644 --- a/src/Python/math_bindings.cpp +++ b/src/Python/math_bindings.cpp @@ -1,6 +1,7 @@ #include #include #include +#include #include "Math/Dense.h" #include "Math/Transform.h" @@ -13,13 +14,154 @@ #include "Math/TriangleMesh.h" #include "Math/VoxRaytracer.h" #include "Math/Accumulator.h" +#include "Math/VoxImage.h" namespace py = pybind11; using namespace uLib; +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); + +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); +PYBIND11_MAKE_OPAQUE(uLib::Vector); + void init_math(py::module_ &m) { - // Math/Transform.h + // 1. Basic Eigen Types (Vectors and Matrices) + py::class_(m, "Vector1f").def(py::init<>()); + py::class_(m, "Vector2f").def(py::init<>()); + py::class_(m, "Vector3f").def(py::init<>()); + py::class_(m, "Vector4f").def(py::init<>()); + py::class_(m, "Vector1i").def(py::init<>()); + py::class_(m, "Vector2i").def(py::init<>()); + py::class_(m, "Vector3i").def(py::init<>()); + py::class_(m, "Vector4i").def(py::init<>()); + py::class_(m, "Vector1d").def(py::init<>()); + py::class_(m, "Vector2d").def(py::init<>()); + py::class_(m, "Vector3d").def(py::init<>()); + py::class_(m, "Vector4d").def(py::init<>()); + + py::class_(m, "Matrix2f").def(py::init<>()); + py::class_(m, "Matrix3f").def(py::init<>()); + py::class_(m, "Matrix4f").def(py::init<>()); + py::class_(m, "Matrix2i").def(py::init<>()); + py::class_(m, "Matrix3i").def(py::init<>()); + py::class_(m, "Matrix4i").def(py::init<>()); + py::class_(m, "Matrix2d").def(py::init<>()); + py::class_(m, "Matrix3d").def(py::init<>()); + py::class_(m, "Matrix4d").def(py::init<>()); + + // 2. Homogeneous types + py::class_(m, "HPoint3f") + .def(py::init<>()) + .def(py::init()) + .def(py::init()); + py::class_(m, "HVector3f") + .def(py::init<>()) + .def(py::init()) + .def(py::init()); + py::class_(m, "HLine3f") + .def(py::init<>()) + .def_readwrite("origin", &HLine3f::origin) + .def_readwrite("direction", &HLine3f::direction); + py::class_(m, "HError3f") + .def(py::init<>()) + .def_readwrite("position_error", &HError3f::position_error) + .def_readwrite("direction_error", &HError3f::direction_error); + + // 3. Dynamic Vectors (uLib::Vector) + py::bind_vector>(m, "Vector_i") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_ui") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_l") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_ul") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_f") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_d") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + + py::bind_vector>(m, "Vector_Vector3f") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_Vector3i") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_Vector4f") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_Vector4i") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_Vector3d") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_Vector4d") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_Voxel") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + py::bind_vector>(m, "Vector_VoxRaytracerRayDataElement") + .def("MoveToVRAM", &uLib::Vector::MoveToVRAM) + .def("MoveToRAM", &uLib::Vector::MoveToRAM); + + // 4. Accumulators + py::class_>(m, "Accumulator_Mean_f") + .def(py::init<>()) + .def("AddPass", &Accumulator_Mean::AddPass) + .def("__call__", py::overload_cast(&Accumulator_Mean::operator())) + .def("__call__", py::overload_cast<>(&Accumulator_Mean::operator(), py::const_)); + + py::class_>(m, "Accumulator_Mean_d") + .def(py::init<>()) + .def("AddPass", &Accumulator_Mean::AddPass) + .def("__call__", py::overload_cast(&Accumulator_Mean::operator())) + .def("__call__", py::overload_cast<>(&Accumulator_Mean::operator(), py::const_)); + + py::class_>(m, "Accumulator_ABTrim_f") + .def(py::init<>()) + .def("SetABTrim", &Accumulator_ABTrim::SetABTrim) + .def("__iadd__", [](Accumulator_ABTrim &self, float val) { self += val; return &self; }) + .def("__call__", &Accumulator_ABTrim::operator()); + + py::class_>(m, "Accumulator_ABTrim_d") + .def(py::init<>()) + .def("SetABTrim", &Accumulator_ABTrim::SetABTrim) + .def("__iadd__", [](Accumulator_ABTrim &self, double val) { self += val; return &self; }) + .def("__call__", &Accumulator_ABTrim::operator()); + + py::class_>(m, "Accumulator_ABClip_f") + .def(py::init<>()) + .def("SetABTrim", &Accumulator_ABClip::SetABTrim) + .def("__iadd__", [](Accumulator_ABClip &self, float val) { self += val; return &self; }) + .def("__call__", &Accumulator_ABClip::operator()); + + py::class_>(m, "Accumulator_ABClip_d") + .def(py::init<>()) + .def("SetABTrim", &Accumulator_ABClip::SetABTrim) + .def("__iadd__", [](Accumulator_ABClip &self, double val) { self += val; return &self; }) + .def("__call__", &Accumulator_ABClip::operator()); + + // 5. Core Math Structures py::class_(m, "AffineTransform") .def(py::init<>()) .def("GetWorldMatrix", &AffineTransform::GetWorldMatrix) @@ -34,13 +176,11 @@ void init_math(py::module_ &m) { .def("EulerYZYRotate", &AffineTransform::EulerYZYRotate) .def("FlipAxes", &AffineTransform::FlipAxes); - // Math/Geometry.h py::class_(m, "Geometry") .def(py::init<>()) .def("GetWorldPoint", py::overload_cast(&Geometry::GetWorldPoint, py::const_)) .def("GetLocalPoint", py::overload_cast(&Geometry::GetLocalPoint, py::const_)); - // Math/ContainerBox.h py::class_(m, "ContainerBox") .def(py::init<>()) .def("SetOrigin", &ContainerBox::SetOrigin) @@ -51,7 +191,6 @@ void init_math(py::module_ &m) { .def("GetWorldPoint", py::overload_cast(&ContainerBox::GetWorldPoint, py::const_)) .def("GetLocalPoint", py::overload_cast(&ContainerBox::GetLocalPoint, py::const_)); - // Math/StructuredData.h py::enum_(m, "StructuredDataOrder") .value("CustomOrder", StructuredData::CustomOrder) .value("XYZ", StructuredData::XYZ) @@ -74,7 +213,6 @@ void init_math(py::module_ &m) { .def("Map", &StructuredData::Map) .def("UnMap", &StructuredData::UnMap); - // Math/StructuredGrid.h py::class_(m, "StructuredGrid") .def(py::init()) .def("SetSpacing", &StructuredGrid::SetSpacing) @@ -84,7 +222,6 @@ void init_math(py::module_ &m) { return self.Find(HPoint3f(pt)); }); - // Math/Structured2DGrid.h py::class_(m, "Structured2DGrid") .def(py::init<>()) .def("SetDims", &Structured2DGrid::SetDims) @@ -100,7 +237,6 @@ void init_math(py::module_ &m) { .def("UnitToPhysicsSpace", &Structured2DGrid::UnitToPhysicsSpace) .def("SetDebug", &Structured2DGrid::SetDebug); - // Math/Structured4DGrid.h py::class_(m, "Structured4DGrid") .def(py::init<>()) .def("SetDims", &Structured4DGrid::SetDims) @@ -116,7 +252,36 @@ void init_math(py::module_ &m) { .def("UnitToPhysicsSpace", &Structured4DGrid::UnitToPhysicsSpace) .def("SetDebug", &Structured4DGrid::SetDebug); - // Math/TriangleMesh.h + // 6. High-level Structures + py::class_(m, "Voxel") + .def(py::init<>()) + .def_readwrite("Value", &Voxel::Value); + + py::class_(m, "AbstractVoxImage") + .def("GetValue", py::overload_cast(&Abstract::VoxImage::GetValue, py::const_)) + .def("GetValue", py::overload_cast(&Abstract::VoxImage::GetValue, py::const_)) + .def("SetValue", py::overload_cast(&Abstract::VoxImage::SetValue)) + .def("SetValue", py::overload_cast(&Abstract::VoxImage::SetValue)) + .def("ExportToVtk", &Abstract::VoxImage::ExportToVtk) + .def("ExportToVti", &Abstract::VoxImage::ExportToVti) + .def("ImportFromVtk", &Abstract::VoxImage::ImportFromVtk) + .def("ImportFromVti", &Abstract::VoxImage::ImportFromVti); + + py::class_, Abstract::VoxImage>(m, "VoxImage") + .def(py::init<>()) + .def(py::init()) + .def("Data", &VoxImage::Data, py::return_value_policy::reference_internal) + .def("InitVoxels", &VoxImage::InitVoxels) + .def("Abs", &VoxImage::Abs) + .def("clipImage", py::overload_cast(&VoxImage::clipImage, py::const_)) + .def("clipImage", py::overload_cast(&VoxImage::clipImage, py::const_)) + .def("clipImage", py::overload_cast(&VoxImage::clipImage, py::const_)) + .def("maskImage", py::overload_cast(&VoxImage::maskImage, py::const_)) + .def("maskImage", py::overload_cast(&VoxImage::maskImage, py::const_), py::arg("threshold"), py::arg("belowValue") = 0, py::arg("aboveValue") = 0) + .def("fixVoxels", py::overload_cast(&VoxImage::fixVoxels, py::const_)) + .def("__getitem__", py::overload_cast(&VoxImage::operator[])) + .def("__getitem__", py::overload_cast(&VoxImage::operator[])); + py::class_(m, "TriangleMesh") .def(py::init<>()) .def("AddPoint", &TriangleMesh::AddPoint) @@ -124,7 +289,6 @@ void init_math(py::module_ &m) { .def("Points", &TriangleMesh::Points, py::return_value_policy::reference_internal) .def("Triangles", &TriangleMesh::Triangles, py::return_value_policy::reference_internal); - // Math/VoxRaytracer.h py::class_(m, "VoxRaytracerRayDataElement") .def(py::init<>()) .def_readwrite("vox_id", &VoxRaytracer::RayData::Element::vox_id) @@ -133,6 +297,7 @@ void init_math(py::module_ &m) { py::class_(m, "VoxRaytracerRayData") .def(py::init<>()) .def("AppendRay", &VoxRaytracer::RayData::AppendRay) + .def("Data", py::overload_cast<>(&VoxRaytracer::RayData::Data), py::return_value_policy::reference_internal) .def("Count", &VoxRaytracer::RayData::Count) .def("TotalLength", &VoxRaytracer::RayData::TotalLength) .def("SetCount", &VoxRaytracer::RayData::SetCount) @@ -140,13 +305,8 @@ void init_math(py::module_ &m) { py::class_(m, "VoxRaytracer") .def(py::init(), py::keep_alive<1, 2>()) - .def("GetImage", &VoxRaytracer::GetImage, py::return_value_policy::reference_internal); - - // Math/Accumulator.h - py::class_>(m, "Accumulator_Mean_f") - .def(py::init<>()) - .def("AddPass", &Accumulator_Mean::AddPass) - .def("__call__", py::overload_cast(&Accumulator_Mean::operator())) - .def("__call__", py::overload_cast<>(&Accumulator_Mean::operator(), py::const_)); + .def("GetImage", &VoxRaytracer::GetImage, py::return_value_policy::reference_internal) + .def("TraceLine", &VoxRaytracer::TraceLine) + .def("TraceBetweenPoints", &VoxRaytracer::TraceBetweenPoints); } diff --git a/src/Python/testing/math_pybind_test.py b/src/Python/testing/math_pybind_test.py index 795252c..d638fca 100644 --- a/src/Python/testing/math_pybind_test.py +++ b/src/Python/testing/math_pybind_test.py @@ -58,5 +58,71 @@ class TestMathAccumulator(unittest.TestCase): acc(20.0) self.assertAlmostEqual(acc(), 15.0) +class TestMathNewTypes(unittest.TestCase): + def test_eigen_vectors(self): + v1f = uLib_python.Math.Vector1f() + v3d = uLib_python.Math.Vector3d() + m4f = uLib_python.Math.Matrix4f() + self.assertIsNotNone(v1f) + self.assertIsNotNone(v3d) + self.assertIsNotNone(m4f) + + def test_ulib_vectors(self): + vi = uLib_python.Math.Vector_i() + vi.append(1) + vi.append(2) + self.assertEqual(len(vi), 2) + self.assertEqual(vi[0], 1) + self.assertEqual(vi[1], 2) + + vf = uLib_python.Math.Vector_f() + vf.append(1.5) + self.assertAlmostEqual(vf[0], 1.5) + + def test_homogeneous(self): + p = uLib_python.Math.HPoint3f(1.0, 2.0, 3.0) + v = uLib_python.Math.HVector3f(0.0, 1.0, 0.0) + self.assertIsNotNone(p) + self.assertIsNotNone(v) + + def test_vox_image(self): + img = uLib_python.Math.VoxImage([2, 2, 2]) + self.assertEqual(img.GetDims()[0], 2) + img.SetValue([0, 0, 0], 10.5) + # Note: GetValue returns float, and there might be internal scaling (1.E-6 observed in code) + # Actually in VoxImage.h: GetValue(id) returns At(id).Value + # SetValue(id, value) sets At(id).Value = value + self.assertAlmostEqual(img.GetValue([0, 0, 0]), 10.5) + +class TestMathVoxRaytracer(unittest.TestCase): + def test_raytracer(self): + grid = uLib_python.Math.StructuredGrid([10, 10, 10]) + grid.SetSpacing([1, 1, 1]) + grid.SetOrigin([0, 0, 0]) + + rt = uLib_python.Math.VoxRaytracer(grid) + self.assertIsNotNone(rt) + + # Test TraceBetweenPoints + p1 = np.array([0.5, 0.5, -1.0, 1.0], dtype=np.float32) + p2 = np.array([0.5, 0.5, 11.0, 1.0], dtype=np.float32) + data = rt.TraceBetweenPoints(p1, p2) + + self.assertGreater(data.Count(), 0) + self.assertAlmostEqual(data.TotalLength(), 10.0) + + # Check elements + elements = data.Data() + for i in range(data.Count()): + self.assertGreaterEqual(elements[i].vox_id, 0) + self.assertGreater(elements[i].L, 0) + + def test_ray_data(self): + data = uLib_python.Math.VoxRaytracerRayData() + data.SetCount(10) + data.SetTotalLength(5.5) + self.assertEqual(data.Count(), 10) + self.assertAlmostEqual(data.TotalLength(), 5.5) + if __name__ == '__main__': unittest.main() From 69920acd61ba7c90d553300568812089fd48f210 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Thu, 5 Mar 2026 12:42:14 +0000 Subject: [PATCH 14/19] poetry python build --- .gitignore | 6 ++- build_python.py | 47 +++++++++++++++++++++++ poetry.lock | 7 ++++ pyproject.toml | 21 +++++++---- setup.py | 52 -------------------------- src/Python/testing/core_pybind_test.py | 10 ++--- src/Python/testing/math_pybind_test.py | 34 ++++++++--------- src/Python/testing/pybind_test.py | 18 ++++----- src/Python/uLib/__init__.py | 7 ++++ 9 files changed, 110 insertions(+), 92 deletions(-) create mode 100644 build_python.py create mode 100644 poetry.lock delete mode 100644 setup.py create mode 100644 src/Python/uLib/__init__.py diff --git a/.gitignore b/.gitignore index 95b16f7..8cd3cea 100644 --- a/.gitignore +++ b/.gitignore @@ -4,4 +4,8 @@ build/ build_warnings*.log final_build.log cmake_configure.log -compile_commands.json \ No newline at end of file +compile_commands.json + +dist/ +build_python/ +src/Python/uLib/*.so* \ No newline at end of file diff --git a/build_python.py b/build_python.py new file mode 100644 index 0000000..1a8554f --- /dev/null +++ b/build_python.py @@ -0,0 +1,47 @@ +import os +import subprocess +import sys +import shutil + +def build(setup_kwargs): + """ + Build the C++ extension using CMake. + This function is called by poetry-core during the build process. + The binary is placed directly inside the uLib directory in src/Python. + """ + # Root of the whole project where this build_extension.py is located + project_root = os.path.abspath(os.path.dirname(__file__)) + + # Where the extension should go + package_dir = os.path.join(project_root, "src/Python/uLib") + + # Ensure package directory exists + os.makedirs(package_dir, exist_ok=True) + + # Temporary build directory + build_temp = os.path.join(project_root, "build_python") + os.makedirs(build_temp, exist_ok=True) + + print(f"--- Running CMake build in {build_temp} ---") + print(f"Project root: {project_root}") + print(f"Target binary dir: {package_dir}") + + # CMake configuration + cmake_args = [ + f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={package_dir}", + f"-DPYTHON_EXECUTABLE={sys.executable}", + "-DCMAKE_BUILD_TYPE=Release", + "-DUSE_CUDA=OFF", + "-G", "Unix Makefiles", + ] + + # Use micromamba to ensure Boost and VTK are found during the build + subprocess.check_call(["cmake", project_root] + cmake_args, cwd=build_temp) + subprocess.check_call(["cmake", "--build", ".", "--parallel", "--target", "uLib_python"], cwd=build_temp) + + # Ensure the package is found by poetry during the wheel creation process. + # Return setup_kwargs for poetry-core. + return setup_kwargs + +if __name__ == "__main__": + build({}) diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..9764845 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,7 @@ +# This file is automatically @generated by Poetry 2.3.1 and should not be changed by hand. +package = [] + +[metadata] +lock-version = "2.1" +python-versions = ">=3.9" +content-hash = "db9b4c08b159b17b239e26c67ead7c37b82d9f9eb06550245ae3134c095f98f7" diff --git a/pyproject.toml b/pyproject.toml index 1b54914..fff5cad 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,10 +1,15 @@ +[tool.poetry] +name = "uLib" +version = "0.6.0" +description = "CMT Cosmic Muon Tomography project uLib python bindings" +authors = ["Andrea Rigoni Garola "] +readme = "README.md" +packages = [{ include = "uLib", from = "src/Python" }] +build = "build_python.py" + +[tool.poetry.dependencies] +python = ">=3.9" [build-system] -requires = [ - "setuptools>=42", - "wheel", - "pybind11>=2.6.0", - "cmake>=3.12", - "ninja"] - -build-backend = "setuptools.build_meta" +requires = ["poetry-core>=2.0.0", "pybind11>=2.6.0", "cmake>=3.12"] +build-backend = "poetry.core.masonry.api" diff --git a/setup.py b/setup.py deleted file mode 100644 index c6e6e20..0000000 --- a/setup.py +++ /dev/null @@ -1,52 +0,0 @@ -import os -import re -import subprocess -import sys - -from setuptools import Extension, setup -from setuptools.command.build_ext import build_ext - -class CMakeExtension(Extension): - def __init__(self, name, sourcedir=""): - Extension.__init__(self, name, sources=[]) - self.sourcedir = os.path.abspath(sourcedir) - -class CMakeBuild(build_ext): - def build_extension(self, ext): - extdir = os.path.abspath(os.path.dirname(self.get_ext_fullpath(ext.name))) - - if not extdir.endswith(os.path.sep): - extdir += os.path.sep - - debug = int(os.environ.get("DEBUG", 0)) if self.debug is None else self.debug - cfg = "Debug" if debug else "Release" - - cmake_args = [ - f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={extdir}", - f"-DPYTHON_EXECUTABLE={sys.executable}", - f"-DCMAKE_BUILD_TYPE={cfg}", - f"-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE", - f"-DCMAKE_INSTALL_RPATH=$ORIGIN", - "-DUSE_CUDA=OFF", - "-G", "Unix Makefiles", - ] - build_args = [] - - build_temp = os.path.join(self.build_temp, ext.name) - if not os.path.exists(build_temp): - os.makedirs(build_temp) - - subprocess.check_call(["cmake", ext.sourcedir] + cmake_args, cwd=build_temp) - subprocess.check_call(["cmake", "--build", ".", "--target", "uLib_python"] + build_args, cwd=build_temp) - -setup( - name="ulib", - version="0.6.0", - author="Andrea Rigoni Garola", - author_email="andrea.rigoni@pd.infn.it", - description="CMT Cosmic Muon Tomography project uLib python bindings", - ext_modules=[CMakeExtension("uLib_python")], - cmdclass={"build_ext": CMakeBuild}, - zip_safe=False, - python_requires=">=3.6", -) diff --git a/src/Python/testing/core_pybind_test.py b/src/Python/testing/core_pybind_test.py index 216a7b4..9cd3f56 100644 --- a/src/Python/testing/core_pybind_test.py +++ b/src/Python/testing/core_pybind_test.py @@ -3,11 +3,11 @@ import os import unittest import time -import uLib_python +import uLib class TestCoreOptions(unittest.TestCase): def test_options(self): - opt = uLib_python.Core.Options("Test Options") + opt = uLib.Core.Options("Test Options") # Test basic config file parsing with open("test_configuration.ini", "w") as f: @@ -18,12 +18,12 @@ class TestCoreOptions(unittest.TestCase): class TestCoreObject(unittest.TestCase): def test_object(self): - obj = uLib_python.Core.Object() - self.assertIsNotNone(obj) + obj = uLib.Core.Object() + self.assertIsNotN one(obj) class TestCoreTimer(unittest.TestCase): def test_timer(self): - timer = uLib_python.Core.Timer() + timer = uLib.Core.Timer() timer.Start() time.sleep(0.1) val = timer.StopWatch() diff --git a/src/Python/testing/math_pybind_test.py b/src/Python/testing/math_pybind_test.py index d638fca..f3d7c2a 100644 --- a/src/Python/testing/math_pybind_test.py +++ b/src/Python/testing/math_pybind_test.py @@ -3,7 +3,7 @@ import os import unittest import numpy as np -import uLib_python +import uLib def vector4f0(v, target): diff = np.array(v) - np.array(target) @@ -12,7 +12,7 @@ def vector4f0(v, target): class TestMathGeometry(unittest.TestCase): def test_geometry(self): - Geo = uLib_python.Math.Geometry() + Geo = uLib.Math.Geometry() Geo.SetPosition([1, 1, 1]) @@ -27,7 +27,7 @@ class TestMathGeometry(unittest.TestCase): class TestMathContainerBox(unittest.TestCase): def test_container_box_local(self): - Cnt = uLib_python.Math.ContainerBox() + Cnt = uLib.Math.ContainerBox() Cnt.SetOrigin([-1, -1, -1]) Cnt.SetSize([2, 2, 2]) @@ -35,7 +35,7 @@ class TestMathContainerBox(unittest.TestCase): self.assertTrue(np.allclose(size, [2, 2, 2])) def test_container_box_global(self): - Box = uLib_python.Math.ContainerBox() + Box = uLib.Math.ContainerBox() Box.SetPosition([1, 1, 1]) Box.SetSize([2, 2, 2]) @@ -45,7 +45,7 @@ class TestMathContainerBox(unittest.TestCase): class TestMathStructuredGrid(unittest.TestCase): def test_structured_grid(self): - grid = uLib_python.Math.StructuredGrid([10, 10, 10]) + grid = uLib.Math.StructuredGrid([10, 10, 10]) grid.SetSpacing([1, 1, 1]) spacing = grid.GetSpacing() @@ -53,40 +53,40 @@ class TestMathStructuredGrid(unittest.TestCase): class TestMathAccumulator(unittest.TestCase): def test_accumulator_mean(self): - acc = uLib_python.Math.Accumulator_Mean_f() + acc = uLib.Math.Accumulator_Mean_f() acc(10.0) acc(20.0) self.assertAlmostEqual(acc(), 15.0) class TestMathNewTypes(unittest.TestCase): def test_eigen_vectors(self): - v1f = uLib_python.Math.Vector1f() - v3d = uLib_python.Math.Vector3d() - m4f = uLib_python.Math.Matrix4f() + v1f = uLib.Math.Vector1f() + v3d = uLib.Math.Vector3d() + m4f = uLib.Math.Matrix4f() self.assertIsNotNone(v1f) self.assertIsNotNone(v3d) self.assertIsNotNone(m4f) def test_ulib_vectors(self): - vi = uLib_python.Math.Vector_i() + vi = uLib.Math.Vector_i() vi.append(1) vi.append(2) self.assertEqual(len(vi), 2) self.assertEqual(vi[0], 1) self.assertEqual(vi[1], 2) - vf = uLib_python.Math.Vector_f() + vf = uLib.Math.Vector_f() vf.append(1.5) self.assertAlmostEqual(vf[0], 1.5) def test_homogeneous(self): - p = uLib_python.Math.HPoint3f(1.0, 2.0, 3.0) - v = uLib_python.Math.HVector3f(0.0, 1.0, 0.0) + p = uLib.Math.HPoint3f(1.0, 2.0, 3.0) + v = uLib.Math.HVector3f(0.0, 1.0, 0.0) self.assertIsNotNone(p) self.assertIsNotNone(v) def test_vox_image(self): - img = uLib_python.Math.VoxImage([2, 2, 2]) + img = uLib.Math.VoxImage([2, 2, 2]) self.assertEqual(img.GetDims()[0], 2) img.SetValue([0, 0, 0], 10.5) # Note: GetValue returns float, and there might be internal scaling (1.E-6 observed in code) @@ -96,11 +96,11 @@ class TestMathNewTypes(unittest.TestCase): class TestMathVoxRaytracer(unittest.TestCase): def test_raytracer(self): - grid = uLib_python.Math.StructuredGrid([10, 10, 10]) + grid = uLib.Math.StructuredGrid([10, 10, 10]) grid.SetSpacing([1, 1, 1]) grid.SetOrigin([0, 0, 0]) - rt = uLib_python.Math.VoxRaytracer(grid) + rt = uLib.Math.VoxRaytracer(grid) self.assertIsNotNone(rt) # Test TraceBetweenPoints @@ -118,7 +118,7 @@ class TestMathVoxRaytracer(unittest.TestCase): self.assertGreater(elements[i].L, 0) def test_ray_data(self): - data = uLib_python.Math.VoxRaytracerRayData() + data = uLib.Math.VoxRaytracerRayData() data.SetCount(10) data.SetTotalLength(5.5) self.assertEqual(data.Count(), 10) diff --git a/src/Python/testing/pybind_test.py b/src/Python/testing/pybind_test.py index ced2d27..a61fcd3 100644 --- a/src/Python/testing/pybind_test.py +++ b/src/Python/testing/pybind_test.py @@ -1,42 +1,42 @@ import sys import os -import uLib_python +import uLib def test_core(): print("Testing Core module...") - obj = uLib_python.Core.Object() + obj = uLib.Core.Object() print("Core Object created:", obj) - timer = uLib_python.Core.Timer() + timer = uLib.Core.Timer() timer.Start() print("Core Timer started") - options = uLib_python.Core.Options("Test Options") + options = uLib.Core.Options("Test Options") print("Core Options created:", options) def test_math(): print("Testing Math module...") # Test AffineTransform - transform = uLib_python.Math.AffineTransform() + transform = uLib.Math.AffineTransform() print("AffineTransform created") # Test Geometry - geom = uLib_python.Math.Geometry() + geom = uLib.Math.Geometry() print("Geometry created") # Test StructuredData - data = uLib_python.Math.StructuredData([10, 10, 10]) + data = uLib.Math.StructuredData([10, 10, 10]) print("StructuredData created with dims:", data.GetDims()) # Test Structured2DGrid - grid2d = uLib_python.Math.Structured2DGrid() + grid2d = uLib.Math.Structured2DGrid() grid2d.SetDims([100, 100]) print("Structured2DGrid created with dims:", grid2d.GetDims()) # Test TriangleMesh - mesh = uLib_python.Math.TriangleMesh() + mesh = uLib.Math.TriangleMesh() print("TriangleMesh created") print("All tests passed successfully!") diff --git a/src/Python/uLib/__init__.py b/src/Python/uLib/__init__.py new file mode 100644 index 0000000..6769b3b --- /dev/null +++ b/src/Python/uLib/__init__.py @@ -0,0 +1,7 @@ +try: + from .uLib_python import Core, Math +except ImportError: + # Handle cases where the binary extension is not yet built + pass + +__all__ = ["Core", "Math"] From 42db99759ffde6ee16f8d2d6aba26e65bc8f35f5 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Thu, 5 Mar 2026 14:26:05 +0000 Subject: [PATCH 15/19] fix py dense --- .gitignore | 5 +- src/Core/Vector.h | 5 ++ src/Math/Dense.h | 8 +- src/Python/CMakeLists.txt | 6 +- src/Python/math_bindings.cpp | 114 ++++++++++++++++++++----- src/Python/testing/core_pybind_test.py | 2 +- src/Python/testing/math_pybind_test.py | 61 +++++++++++++ test.cpp | 10 --- 8 files changed, 174 insertions(+), 37 deletions(-) delete mode 100644 test.cpp diff --git a/.gitignore b/.gitignore index 8cd3cea..07b2233 100644 --- a/.gitignore +++ b/.gitignore @@ -8,4 +8,7 @@ compile_commands.json dist/ build_python/ -src/Python/uLib/*.so* \ No newline at end of file +src/Python/uLib/*.so* +src/Python/uLib/*.pyd +src/Python/uLib/*.pyc +src/Python/uLib/__pycache__ diff --git a/src/Core/Vector.h b/src/Core/Vector.h index 2622816..d7cf928 100644 --- a/src/Core/Vector.h +++ b/src/Core/Vector.h @@ -117,6 +117,10 @@ bool operator!=(const MetaAllocator &, const MetaAllocator &) { return false; } + + + + // Vector Implemetation ... wraps std::vector template class Vector : public std::vector> { typedef std::vector> BaseClass; @@ -136,6 +140,7 @@ public: Vector(unsigned int size) : BaseClass(size) {} Vector(unsigned int size, T &value) : BaseClass(size, value) {} Vector() : BaseClass(0) {} + Vector(std::initializer_list init) : BaseClass(init) {} inline VectorCommaInit operator<<(T scalar) { return VectorCommaInit(this, scalar); diff --git a/src/Math/Dense.h b/src/Math/Dense.h index ef302a3..5f08d36 100644 --- a/src/Math/Dense.h +++ b/src/Math/Dense.h @@ -47,6 +47,7 @@ #ifndef ULIB_DENSEMATRIX_H #define ULIB_DENSEMATRIX_H +// #include #include #include @@ -144,6 +145,11 @@ typedef Eigen::Matrix2d Matrix2d; typedef Eigen::Matrix3d Matrix3d; typedef Eigen::Matrix4d Matrix4d; +typedef Eigen::MatrixXi MatrixXi; +typedef Eigen::MatrixXf MatrixXf; +typedef Eigen::MatrixXd MatrixXd; + + //////////////////////////////////////////////////////////////////////////////// // Vector String interaction /////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////// @@ -185,7 +191,7 @@ std::string VectorxT_ToString(const Eigen::Matrix &vec) { // } template -void operator>>(std::string &str, Eigen::Matrix &vec) { +void operator >> (std::string &str, Eigen::Matrix &vec) { VectorxT_StringTo(vec, str); } diff --git a/src/Python/CMakeLists.txt b/src/Python/CMakeLists.txt index 095031f..b165b98 100644 --- a/src/Python/CMakeLists.txt +++ b/src/Python/CMakeLists.txt @@ -38,15 +38,15 @@ if(BUILD_TESTING) add_test(NAME pybind_general COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/pybind_test.py) set_tests_properties(pybind_general PROPERTIES - ENVIRONMENT "PYTHONPATH=$") + ENVIRONMENT "PYTHONPATH=$:${PROJECT_SOURCE_DIR}/src/Python") add_test(NAME pybind_core COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/core_pybind_test.py) set_tests_properties(pybind_core PROPERTIES - ENVIRONMENT "PYTHONPATH=$") + ENVIRONMENT "PYTHONPATH=$:${PROJECT_SOURCE_DIR}/src/Python") add_test(NAME pybind_math COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/math_pybind_test.py) set_tests_properties(pybind_math PROPERTIES - ENVIRONMENT "PYTHONPATH=$") + ENVIRONMENT "PYTHONPATH=$:${PROJECT_SOURCE_DIR}/src/Python") endif() diff --git a/src/Python/math_bindings.cpp b/src/Python/math_bindings.cpp index fcb2394..2c60f88 100644 --- a/src/Python/math_bindings.cpp +++ b/src/Python/math_bindings.cpp @@ -3,6 +3,8 @@ #include #include +#include + #include "Math/Dense.h" #include "Math/Transform.h" #include "Math/Geometry.h" @@ -32,34 +34,104 @@ PYBIND11_MAKE_OPAQUE(uLib::Vector); PYBIND11_MAKE_OPAQUE(uLib::Vector); PYBIND11_MAKE_OPAQUE(uLib::Vector); PYBIND11_MAKE_OPAQUE(uLib::Vector); + PYBIND11_MAKE_OPAQUE(uLib::Vector); PYBIND11_MAKE_OPAQUE(uLib::Vector); +template +void bind_eigen_type(py::module_ &m, const char *name) { + using Scalar = typename MatrixType::Scalar; + constexpr bool is_vector = MatrixType::IsVectorAtCompileTime; + + // Default constructor (zeros) + m.def(name, []() -> MatrixType { + if constexpr (MatrixType::RowsAtCompileTime == Eigen::Dynamic || MatrixType::ColsAtCompileTime == Eigen::Dynamic) { + return MatrixType(); // Empty dynamic matrix + } else { + return MatrixType::Zero(); // Zero static matrix + } + }); + + // Specialized constructor for dynamic matrices + if constexpr (MatrixType::RowsAtCompileTime == Eigen::Dynamic || MatrixType::ColsAtCompileTime == Eigen::Dynamic) { + m.def(name, [](int rows, int cols) -> MatrixType { + MatrixType mat; + mat.setZero(rows, cols); + return mat; + }); + } + + // Initialize from list + m.def(name, [](py::list l) -> MatrixType { + MatrixType mat; + if constexpr (is_vector) { + mat.setZero(l.size()); + for (size_t i = 0; i < l.size(); ++i) { + mat(i) = l[i].cast(); + } + } else { + int rows = MatrixType::RowsAtCompileTime == Eigen::Dynamic ? (int)std::sqrt(l.size()) : MatrixType::RowsAtCompileTime; + int cols = MatrixType::ColsAtCompileTime == Eigen::Dynamic ? (int)std::sqrt(l.size()) : MatrixType::ColsAtCompileTime; + mat.setZero(rows, cols); + for (size_t i = 0; i < (size_t)l.size(); ++i) { + mat(i / cols, i % cols) = l[i].cast(); + } + } + return mat; + }); + + // Initialize from py::array + m.def(name, [](py::array_t arr) -> MatrixType { + auto buf = arr.request(); + MatrixType mat; + if constexpr (is_vector) { + mat.setZero(buf.size); + Scalar* ptr = static_cast(buf.ptr); + for (ssize_t i = 0; i < buf.size; ++i) mat(i) = ptr[i]; + } else { + int rows = buf.shape.size() > 0 ? (int)buf.shape[0] : 1; + int cols = buf.shape.size() > 1 ? (int)buf.shape[1] : 1; + mat.setZero(rows, cols); + Scalar* ptr = static_cast(buf.ptr); + for (int i = 0; i < rows; ++i) { + for (int j = 0; j < cols; ++j) { + mat(i, j) = ptr[i * cols + j]; + } + } + } + return mat; + }); +} + void init_math(py::module_ &m) { // 1. Basic Eigen Types (Vectors and Matrices) - py::class_(m, "Vector1f").def(py::init<>()); - py::class_(m, "Vector2f").def(py::init<>()); - py::class_(m, "Vector3f").def(py::init<>()); - py::class_(m, "Vector4f").def(py::init<>()); - py::class_(m, "Vector1i").def(py::init<>()); - py::class_(m, "Vector2i").def(py::init<>()); - py::class_(m, "Vector3i").def(py::init<>()); - py::class_(m, "Vector4i").def(py::init<>()); - py::class_(m, "Vector1d").def(py::init<>()); - py::class_(m, "Vector2d").def(py::init<>()); - py::class_(m, "Vector3d").def(py::init<>()); - py::class_(m, "Vector4d").def(py::init<>()); + bind_eigen_type(m, "Vector1f"); + bind_eigen_type(m, "Vector2f"); + bind_eigen_type(m, "Vector3f"); + bind_eigen_type(m, "Vector4f"); + bind_eigen_type(m, "Vector1i"); + bind_eigen_type(m, "Vector2i"); + bind_eigen_type(m, "Vector3i"); + bind_eigen_type(m, "Vector4i"); + bind_eigen_type(m, "Vector1d"); + bind_eigen_type(m, "Vector2d"); + bind_eigen_type(m, "Vector3d"); + bind_eigen_type(m, "Vector4d"); - py::class_(m, "Matrix2f").def(py::init<>()); - py::class_(m, "Matrix3f").def(py::init<>()); - py::class_(m, "Matrix4f").def(py::init<>()); - py::class_(m, "Matrix2i").def(py::init<>()); - py::class_(m, "Matrix3i").def(py::init<>()); - py::class_(m, "Matrix4i").def(py::init<>()); - py::class_(m, "Matrix2d").def(py::init<>()); - py::class_(m, "Matrix3d").def(py::init<>()); - py::class_(m, "Matrix4d").def(py::init<>()); + bind_eigen_type(m, "Matrix2f"); + bind_eigen_type(m, "Matrix3f"); + bind_eigen_type(m, "Matrix4f"); + bind_eigen_type(m, "Matrix2i"); + bind_eigen_type(m, "Matrix3i"); + bind_eigen_type(m, "Matrix4i"); + bind_eigen_type(m, "Matrix2d"); + bind_eigen_type(m, "Matrix3d"); + bind_eigen_type(m, "Matrix4d"); + + bind_eigen_type(m, "MatrixXi"); + bind_eigen_type(m, "MatrixXf"); + bind_eigen_type(m, "MatrixXd"); // 2. Homogeneous types py::class_(m, "HPoint3f") diff --git a/src/Python/testing/core_pybind_test.py b/src/Python/testing/core_pybind_test.py index 9cd3f56..1ce470d 100644 --- a/src/Python/testing/core_pybind_test.py +++ b/src/Python/testing/core_pybind_test.py @@ -19,7 +19,7 @@ class TestCoreOptions(unittest.TestCase): class TestCoreObject(unittest.TestCase): def test_object(self): obj = uLib.Core.Object() - self.assertIsNotN one(obj) + self.assertIsNotNone(obj) class TestCoreTimer(unittest.TestCase): def test_timer(self): diff --git a/src/Python/testing/math_pybind_test.py b/src/Python/testing/math_pybind_test.py index f3d7c2a..a2e48c0 100644 --- a/src/Python/testing/math_pybind_test.py +++ b/src/Python/testing/math_pybind_test.py @@ -10,6 +10,67 @@ def vector4f0(v, target): diff[3] = 0 # ignoring w return np.all(np.abs(diff) < 0.001) + +class TestMathMatrix(unittest.TestCase): + + def test_matrix(self): + def check_1234(m2f): + self.assertEqual(m2f[0, 0], 1) + self.assertEqual(m2f[0, 1], 2) + self.assertEqual(m2f[1, 0], 3) + self.assertEqual(m2f[1, 1], 4) + + m2f = uLib.Math.Matrix2f() + m2f[0, 0] = 1 + m2f[0, 1] = 2 + m2f[1, 0] = 3 + m2f[1, 1] = 4 + check_1234(m2f) + + m2f = uLib.Math.Matrix2f([1, 2, 3, 4]) + check_1234(m2f) + + # m2f = uLib.Math.Matrix2f([[1, 2], [3, 4]]) + # check_1234(m2f) + + m2f = uLib.Math.Matrix2f(np.array([[1, 2], [3, 4]])) + check_1234(m2f) + + def test_vector2(self): + v2f = uLib.Math.Vector2f() + v2f[0] = 1 + v2f[1] = 2 + self.assertEqual(v2f[0], 1) + self.assertEqual(v2f[1], 2) + + v2f = uLib.Math.Vector2f([1, 2]) + self.assertEqual(v2f[0], 1) + self.assertEqual(v2f[1], 2) + + v2f = uLib.Math.Vector2f(np.array([1, 2])) + self.assertEqual(v2f[0], 1) + self.assertEqual(v2f[1], 2) + + def test_vector3(self): + v3f = uLib.Math.Vector3f() + v3f[0] = 1 + v3f[1] = 2 + v3f[2] = 3 + self.assertEqual(v3f[0], 1) + self.assertEqual(v3f[1], 2) + self.assertEqual(v3f[2], 3) + + v3f = uLib.Math.Vector3f([1, 2, 3]) + self.assertEqual(v3f[0], 1) + self.assertEqual(v3f[1], 2) + self.assertEqual(v3f[2], 3) + + v3f = uLib.Math.Vector3f(np.array([1, 2, 3])) + self.assertEqual(v3f[0], 1) + self.assertEqual(v3f[1], 2) + self.assertEqual(v3f[2], 3) + + class TestMathGeometry(unittest.TestCase): def test_geometry(self): Geo = uLib.Math.Geometry() diff --git a/test.cpp b/test.cpp deleted file mode 100644 index 9969c96..0000000 --- a/test.cpp +++ /dev/null @@ -1,10 +0,0 @@ - -#include "Core/Object.h" - - - -int main() -{ - uLib::Object obj; - return 0; -} From 554eff9b55703f04fcbe5e4729e5051efa66624d Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Thu, 5 Mar 2026 15:03:19 +0000 Subject: [PATCH 16/19] add filters in python bindings --- src/Math/VoxImage.h | 3 +- src/Math/VoxImageFilterABTrim.hpp | 6 +- src/Math/VoxImageFilterLinear.hpp | 4 +- src/Python/CMakeLists.txt | 8 +- src/Python/math_bindings.cpp | 3 +- src/Python/math_filters_bindings.cpp | 100 ++++++++++++++++ src/Python/module.cpp | 2 + src/Python/testing/math_filters_test.py | 151 ++++++++++++++++++++++++ 8 files changed, 269 insertions(+), 8 deletions(-) create mode 100644 src/Python/math_filters_bindings.cpp create mode 100644 src/Python/testing/math_filters_test.py diff --git a/src/Math/VoxImage.h b/src/Math/VoxImage.h index eba6125..66b276a 100644 --- a/src/Math/VoxImage.h +++ b/src/Math/VoxImage.h @@ -90,7 +90,8 @@ struct Voxel { } // namespace Interface struct Voxel { - Scalarf Value; + Scalarf Value = 0.0f; + Scalari Count = 0; }; //////////////////////////////////////////////////////////////////////////////// diff --git a/src/Math/VoxImageFilterABTrim.hpp b/src/Math/VoxImageFilterABTrim.hpp index de3c117..621c00d 100644 --- a/src/Math/VoxImageFilterABTrim.hpp +++ b/src/Math/VoxImageFilterABTrim.hpp @@ -36,7 +36,7 @@ namespace uLib { -#ifdef USE_CUDA +#if defined(USE_CUDA) && defined(__CUDACC__) template __global__ void ABTrimFilterKernel(const VoxelT *in, VoxelT *out, const VoxelT *kernel, int vox_size, @@ -108,7 +108,7 @@ public: mBtrim = 0; } -#ifdef USE_CUDA +#if defined(USE_CUDA) && defined(__CUDACC__) void Run() { if (this->m_Image->Data().GetDevice() == MemoryDevice::VRAM || this->m_KernelData.Data().GetDevice() == MemoryDevice::VRAM) { @@ -206,7 +206,7 @@ public: mBtrim = 0; } -#ifdef USE_CUDA +#if defined(USE_CUDA) && defined(__CUDACC__) void Run() { if (this->m_Image->Data().GetDevice() == MemoryDevice::VRAM || this->m_KernelData.Data().GetDevice() == MemoryDevice::VRAM) { diff --git a/src/Math/VoxImageFilterLinear.hpp b/src/Math/VoxImageFilterLinear.hpp index 8079d61..420254a 100644 --- a/src/Math/VoxImageFilterLinear.hpp +++ b/src/Math/VoxImageFilterLinear.hpp @@ -36,7 +36,7 @@ namespace uLib { -#ifdef USE_CUDA +#if defined(USE_CUDA) && defined(__CUDACC__) template __global__ void LinearFilterKernel(const VoxelT *in, VoxelT *out, const VoxelT *kernel, int vox_size, @@ -66,7 +66,7 @@ public: typedef VoxImageFilter> BaseClass; VoxFilterAlgorithmLinear(const Vector3i &size) : BaseClass(size) {} -#ifdef USE_CUDA +#if defined(USE_CUDA) && defined(__CUDACC__) void Run() { if (this->m_Image->Data().GetDevice() == MemoryDevice::VRAM || this->m_KernelData.Data().GetDevice() == MemoryDevice::VRAM) { diff --git a/src/Python/CMakeLists.txt b/src/Python/CMakeLists.txt index b165b98..5ca99bf 100644 --- a/src/Python/CMakeLists.txt +++ b/src/Python/CMakeLists.txt @@ -4,10 +4,11 @@ set(SOURCES module.cpp core_bindings.cpp math_bindings.cpp + math_filters_bindings.cpp ) # Use pybind11 to add the python module -pybind11_add_module(uLib_python module.cpp core_bindings.cpp math_bindings.cpp) +pybind11_add_module(uLib_python module.cpp core_bindings.cpp math_bindings.cpp math_filters_bindings.cpp) # Link against our C++ libraries target_link_libraries(uLib_python PRIVATE @@ -49,4 +50,9 @@ if(BUILD_TESTING) COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/math_pybind_test.py) set_tests_properties(pybind_math PROPERTIES ENVIRONMENT "PYTHONPATH=$:${PROJECT_SOURCE_DIR}/src/Python") + + add_test(NAME pybind_math_filters + COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/math_filters_test.py) + set_tests_properties(pybind_math_filters PROPERTIES + ENVIRONMENT "PYTHONPATH=$:${PROJECT_SOURCE_DIR}/src/Python") endif() diff --git a/src/Python/math_bindings.cpp b/src/Python/math_bindings.cpp index 2c60f88..cdf2eed 100644 --- a/src/Python/math_bindings.cpp +++ b/src/Python/math_bindings.cpp @@ -327,7 +327,8 @@ void init_math(py::module_ &m) { // 6. High-level Structures py::class_(m, "Voxel") .def(py::init<>()) - .def_readwrite("Value", &Voxel::Value); + .def_readwrite("Value", &Voxel::Value) + .def_readwrite("Count", &Voxel::Count); py::class_(m, "AbstractVoxImage") .def("GetValue", py::overload_cast(&Abstract::VoxImage::GetValue, py::const_)) diff --git a/src/Python/math_filters_bindings.cpp b/src/Python/math_filters_bindings.cpp new file mode 100644 index 0000000..109ffcf --- /dev/null +++ b/src/Python/math_filters_bindings.cpp @@ -0,0 +1,100 @@ +#include +#include +#include + +#include "Math/VoxImage.h" +#include "Math/VoxImageFilter.h" +#include "Math/VoxImageFilterLinear.hpp" +#include "Math/VoxImageFilterABTrim.hpp" +#include "Math/VoxImageFilterBilateral.hpp" +#include "Math/VoxImageFilterThreshold.hpp" +#include "Math/VoxImageFilterMedian.hpp" +#include "Math/VoxImageFilter2ndStat.hpp" +#include "Math/VoxImageFilterCustom.hpp" + +namespace py = pybind11; +using namespace uLib; + +template +void bind_common_filter(py::class_ &cls) { + cls.def(py::init()) + .def("Run", &Algorithm::Run) + .def("SetKernelNumericXZY", &Algorithm::SetKernelNumericXZY) + .def("GetImage", &Algorithm::GetImage, py::return_value_policy::reference_internal) + .def("SetImage", &Algorithm::SetImage); +} + +void init_math_filters(py::module_ &m) { + + // Abstract::VoxImageFilter + py::class_>(m, "AbstractVoxImageFilter") + .def("Run", &Abstract::VoxImageFilter::Run) + .def("SetImage", &Abstract::VoxImageFilter::SetImage); + + // Helper macro to define standard bindings for a filter +#define BIND_FILTER(ClassName) \ + { \ + auto cls = py::class_, Abstract::VoxImageFilter>(m, #ClassName); \ + bind_common_filter(cls); \ + } + + // VoxFilterAlgorithmLinear + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmLinear"); + bind_common_filter(cls); + } + + // VoxFilterAlgorithmAbtrim + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmAbtrim"); + bind_common_filter(cls); + cls.def("SetABTrim", &VoxFilterAlgorithmAbtrim::SetABTrim); + } + + // VoxFilterAlgorithmSPR + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmSPR"); + bind_common_filter(cls); + cls.def("SetABTrim", &VoxFilterAlgorithmSPR::SetABTrim); + } + + // VoxFilterAlgorithmBilateral + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmBilateral"); + bind_common_filter(cls); + cls.def("SetIntensitySigma", &VoxFilterAlgorithmBilateral::SetIntensitySigma); + } + + // VoxFilterAlgorithmBilateralTrim + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmBilateralTrim"); + bind_common_filter(cls); + cls.def("SetIntensitySigma", &VoxFilterAlgorithmBilateralTrim::SetIntensitySigma); + cls.def("SetABTrim", &VoxFilterAlgorithmBilateralTrim::SetABTrim); + } + + // VoxFilterAlgorithmThreshold + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmThreshold"); + bind_common_filter(cls); + cls.def("SetThreshold", &VoxFilterAlgorithmThreshold::SetThreshold); + } + + // VoxFilterAlgorithmMedian + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmMedian"); + bind_common_filter(cls); + } + + // VoxFilterAlgorithm2ndStat + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithm2ndStat"); + bind_common_filter(cls); + } + + // VoxFilterAlgorithmCustom (Omit CustomEvaluate since it uses static function ptrs) + { + auto cls = py::class_, Abstract::VoxImageFilter>(m, "VoxFilterAlgorithmCustom"); + bind_common_filter(cls); + } +} diff --git a/src/Python/module.cpp b/src/Python/module.cpp index 0cef30d..0cf5d57 100644 --- a/src/Python/module.cpp +++ b/src/Python/module.cpp @@ -4,6 +4,7 @@ namespace py = pybind11; void init_core(py::module_ &m); void init_math(py::module_ &m); +void init_math_filters(py::module_ &m); PYBIND11_MODULE(uLib_python, m) { m.doc() = "Python bindings for uLib Core and Math libraries"; @@ -15,4 +16,5 @@ PYBIND11_MODULE(uLib_python, m) { // Math submodule py::module_ math = m.def_submodule("Math", "Math library bindings"); init_math(math); + init_math_filters(math); } diff --git a/src/Python/testing/math_filters_test.py b/src/Python/testing/math_filters_test.py new file mode 100644 index 0000000..fd8cd8b --- /dev/null +++ b/src/Python/testing/math_filters_test.py @@ -0,0 +1,151 @@ +import unittest +import numpy as np +import os +import sys + +# Ensure PYTHONPATH is correct if run from root +sys.path.append(os.path.join(os.getcwd(), 'src', 'Python')) + +import uLib + +class TestMathFilters(unittest.TestCase): + def test_filter_creation(self): + # 1. Linear Filter + dims = [10, 10, 10] + v_dims = uLib.Math.Vector3i(dims) + + linear_filter = uLib.Math.VoxFilterAlgorithmLinear(v_dims) + self.assertIsNotNone(linear_filter) + + # 2. ABTrim Filter + abtrim_filter = uLib.Math.VoxFilterAlgorithmAbtrim(v_dims) + self.assertIsNotNone(abtrim_filter) + abtrim_filter.SetABTrim(1, 1) + + # 3. Bilateral Filter + bilat_filter = uLib.Math.VoxFilterAlgorithmBilateral(v_dims) + self.assertIsNotNone(bilat_filter) + bilat_filter.SetIntensitySigma(0.5) + + # 4. Threshold Filter + threshold_filter = uLib.Math.VoxFilterAlgorithmThreshold(v_dims) + self.assertIsNotNone(threshold_filter) + threshold_filter.SetThreshold(0.5) + + # 5. Median Filter + median_filter = uLib.Math.VoxFilterAlgorithmMedian(v_dims) + self.assertIsNotNone(median_filter) + + def test_filter_run(self): + # Create image + dims = [10, 10, 10] + vox_img = uLib.Math.VoxImage(dims) + for i in range(10*10*10): + vox_img.SetValue(i, 1.0) + + # Linear filter + linear_filter = uLib.Math.VoxFilterAlgorithmLinear([3, 3, 3]) + linear_filter.SetImage(vox_img) + + # Set kernel (simple 3x3x3 all ones) + # Weights are usually normalized in linear filter logic? + # Let's just test it runs. + linear_filter.SetKernelNumericXZY([1.0] * 27) + + # Run filter + linear_filter.Run() + + # Value should be 1.0 (mean of all 1.0 is 1.0) + self.assertAlmostEqual(vox_img.GetValue(0), 1.0) + + def test_filter_run_abtrim(self): + # Create image + dims = [10, 10, 10] + vox_img = uLib.Math.VoxImage(dims) + for i in range(10*10*10): + vox_img.SetValue(i, 1.0) + + # ABTrim filter + abtrim_filter = uLib.Math.VoxFilterAlgorithmAbtrim([3, 3, 3]) + abtrim_filter.SetImage(vox_img) + + # Set kernel (simple 3x3x3 all ones) + # Weights are usually normalized in linear filter logic? + # Let's just test it runs. + abtrim_filter.SetKernelNumericXZY([1.0] * 27) + + # Run filter + abtrim_filter.Run() + + # Value should be 1.0 (mean of all 1.0 is 1.0) + self.assertAlmostEqual(vox_img.GetValue(0), 1.0) + + def test_filter_run_bilateral(self): + # Create image + dims = [10, 10, 10] + vox_img = uLib.Math.VoxImage(dims) + for i in range(10*10*10): + vox_img.SetValue(i, 1.0) + + # Bilateral filter + bilat_filter = uLib.Math.VoxFilterAlgorithmBilateral([3, 3, 3]) + bilat_filter.SetImage(vox_img) + + # Set kernel (simple 3x3x3 all ones) + # Weights are usually normalized in linear filter logic? + # Let's just test it runs. + bilat_filter.SetKernelNumericXZY([1.0] * 27) + + # Run filter + bilat_filter.Run() + + # Value should be 1.0 (mean of all 1.0 is 1.0) + self.assertAlmostEqual(vox_img.GetValue(0), 1.0) + + def test_filter_run_threshold(self): + # Create image + dims = [10, 10, 10] + vox_img = uLib.Math.VoxImage(dims) + for i in range(10*10*10): + vox_img.SetValue(i, 1.0) + + # Threshold filter + threshold_filter = uLib.Math.VoxFilterAlgorithmThreshold([3, 3, 3]) + threshold_filter.SetImage(vox_img) + + # Set kernel (simple 3x3x3 all ones) + # Weights are usually normalized in linear filter logic? + # Let's just test it runs. + threshold_filter.SetKernelNumericXZY([1.0] * 27) + + # Run filter + threshold_filter.Run() + + # Value should be 1.0 (mean of all 1.0 is 1.0) + self.assertAlmostEqual(vox_img.GetValue(0), 1.0) + + def test_filter_run_median(self): + # Create image + dims = [10, 10, 10] + vox_img = uLib.Math.VoxImage(dims) + for i in range(10*10*10): + vox_img.SetValue(i, 1.0) + + # Median filter + median_filter = uLib.Math.VoxFilterAlgorithmMedian([3, 3, 3]) + median_filter.SetImage(vox_img) + + # Set kernel (simple 3x3x3 all ones) + # Weights are usually normalized in linear filter logic? + # Let's just test it runs. + median_filter.SetKernelNumericXZY([1.0] * 27) + + # Run filter + median_filter.Run() + + # Value should be 1.0 (mean of all 1.0 is 1.0) + self.assertAlmostEqual(vox_img.GetValue(0), 1.0) + + +if __name__ == '__main__': + unittest.main() From 79e1abb2ff825057beefb43952d19c10305e0853 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Thu, 5 Mar 2026 15:17:30 +0000 Subject: [PATCH 17/19] add USE_CUDA env in python_build --- README.md | 7 +++++++ build_python.py | 9 ++++++++- 2 files changed, 15 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 7ebab60..b765451 100644 --- a/README.md +++ b/README.md @@ -61,3 +61,10 @@ cmake --preset conan-release ```bash cmake --build build -j10 ``` + +### Make python package + +```bash +micromamba run -n mutom env USE_CUDA=ON poetry install +``` + diff --git a/build_python.py b/build_python.py index 1a8554f..5ab1b4f 100644 --- a/build_python.py +++ b/build_python.py @@ -26,12 +26,19 @@ def build(setup_kwargs): print(f"Project root: {project_root}") print(f"Target binary dir: {package_dir}") + # Determine if CUDA should be enabled + use_cuda = os.environ.get("USE_CUDA", "OFF").upper() + if use_cuda in ["ON", "1", "TRUE", "YES"]: + use_cuda = "ON" + else: + use_cuda = "OFF" + # CMake configuration cmake_args = [ f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={package_dir}", f"-DPYTHON_EXECUTABLE={sys.executable}", "-DCMAKE_BUILD_TYPE=Release", - "-DUSE_CUDA=OFF", + f"-DUSE_CUDA={use_cuda}", "-G", "Unix Makefiles", ] From f3ebba493129395c27bc391e6870c796ce7f0aef Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Fri, 6 Mar 2026 10:45:14 +0000 Subject: [PATCH 18/19] add thrust --- src/Core/DataAllocator.h | 1 + src/Core/Vector.h | 45 ++++++++++++++++++-- src/Core/testing/CMakeLists.txt | 5 +++ src/Core/testing/VectorMetaAllocatorTest.cpp | 32 ++++++++++++-- 4 files changed, 76 insertions(+), 7 deletions(-) diff --git a/src/Core/DataAllocator.h b/src/Core/DataAllocator.h index 147dd9f..7e5a7a3 100644 --- a/src/Core/DataAllocator.h +++ b/src/Core/DataAllocator.h @@ -34,6 +34,7 @@ #ifdef USE_CUDA #include +#include #endif namespace uLib { diff --git a/src/Core/Vector.h b/src/Core/Vector.h index d7cf928..4ff69c7 100644 --- a/src/Core/Vector.h +++ b/src/Core/Vector.h @@ -37,6 +37,11 @@ #include #include +#ifdef USE_CUDA +#include +#include +#endif + namespace uLib { // MetaAllocator Implementation ... @@ -117,10 +122,6 @@ bool operator!=(const MetaAllocator &, const MetaAllocator &) { return false; } - - - - // Vector Implemetation ... wraps std::vector template class Vector : public std::vector> { typedef std::vector> BaseClass; @@ -173,6 +174,42 @@ public: return nullptr; } +#ifdef USE_CUDA + /// Returns a thrust::device_ptr to the VRAM data (valid after MoveToVRAM()). + /// thrust::device_ptr is itself a random-access iterator compatible with + /// all thrust algorithms (thrust::transform, thrust::sort, + /// thrust::for_each…). + thrust::device_ptr DeviceData() { + if (auto alloc = MetaAllocator::GetDataAllocator(BaseClass::data())) { + return thrust::device_pointer_cast(alloc->GetVRAMData()); + } + return thrust::device_ptr(nullptr); + } + + thrust::device_ptr DeviceData() const { + if (auto alloc = MetaAllocator::GetDataAllocator( + const_cast(BaseClass::data()))) { + return thrust::device_pointer_cast( + static_cast(alloc->GetVRAMData())); + } + return thrust::device_ptr(nullptr); + } + + /// Device-side begin iterator (valid after MoveToVRAM()). + thrust::device_ptr DeviceBegin() { return DeviceData(); } + + /// Device-side end iterator (valid after MoveToVRAM()). + thrust::device_ptr DeviceEnd() { + return DeviceData() + static_cast(BaseClass::size()); + } + + thrust::device_ptr DeviceBegin() const { return DeviceData(); } + + thrust::device_ptr DeviceEnd() const { + return DeviceData() + static_cast(BaseClass::size()); + } +#endif // USE_CUDA + inline void PrintSelf(std::ostream &o); // Overrides for auto-sync // diff --git a/src/Core/testing/CMakeLists.txt b/src/Core/testing/CMakeLists.txt index 82dc679..7d08dde 100644 --- a/src/Core/testing/CMakeLists.txt +++ b/src/Core/testing/CMakeLists.txt @@ -31,3 +31,8 @@ set(LIBRARIES ${ROOT_LIBRARIES} ) uLib_add_tests(Core) + +if(USE_CUDA) + set_source_files_properties(VectorMetaAllocatorTest.cpp PROPERTIES LANGUAGE CUDA) +endif() + diff --git a/src/Core/testing/VectorMetaAllocatorTest.cpp b/src/Core/testing/VectorMetaAllocatorTest.cpp index c75a643..a0c65ce 100644 --- a/src/Core/testing/VectorMetaAllocatorTest.cpp +++ b/src/Core/testing/VectorMetaAllocatorTest.cpp @@ -12,6 +12,15 @@ #include "testing-prototype.h" #include +#ifdef USE_CUDA +#include +#include + +struct DoubleFunctor { + __host__ __device__ int operator()(int x) const { return x * 2; } +}; +#endif + int main() { BEGIN_TESTING(VectorMetaAllocator); @@ -41,14 +50,31 @@ int main() { exit(1); } + // Verify DeviceData() matches GetVRAMData() + { + thrust::device_ptr dev_ptr = v.DeviceData(); + if (dev_ptr.get() != vram_ptr) { + std::cout << "Error: DeviceData() does not match GetVRAMData()!\n"; + exit(1); + } + std::cout << "DeviceData() matches GetVRAMData(). OK\n"; + } + + // Use thrust::transform via DeviceBegin()/DeviceEnd() to double all elements + // on device + std::cout << "Doubling elements on device via thrust::transform...\n"; + thrust::transform(v.DeviceBegin(), v.DeviceEnd(), v.DeviceBegin(), + DoubleFunctor{}); + std::cout << "Moving back to RAM...\n"; v.MoveToRAM(); - std::cout << "RAM contents after VRAM trip: "; + std::cout << "RAM contents after VRAM trip + thrust transform: "; for (size_t i = 0; i < v.size(); ++i) { std::cout << v[i] << " "; - if (v[i] != (int)(i + 1)) { - std::cout << "\nError: Data corrupted after RAM->VRAM->RAM trip at index " + if (v[i] != (int)((i + 1) * 2)) { + std::cout << "\nError: Data corrupted after RAM->VRAM->thrust->RAM trip " + "at index " << i << "\n"; exit(1); } From b64afe87737bc828b9b9b99e68ac0211c3e822c2 Mon Sep 17 00:00:00 2001 From: AndreaRigoni Date: Fri, 6 Mar 2026 10:45:33 +0000 Subject: [PATCH 19/19] add documention workflow --- .gitea/workflows/publish-docs.yaml | 41 ++ .gitignore | 1 + CMakePresets.json | 16 + docs/assets/css/extensions/tabbed.css | 41 ++ docs/assets/css/extra.css | 17 + docs/docker/Dockerfile | 30 ++ docs/docker/Dockerfile.dev | 14 + docs/docker/docker-compose.yml | 13 + docs/docker/requirements.txt | 17 + docs/docker/runtime.txt | 1 + docs/index.md | 63 +++ docs/python/developer_guide.md | 179 ++++++++ docs/python/installation.md | 146 +++++++ docs/python/usage.md | 373 +++++++++++++++++ mkdocs.yml | 561 ++++++++++++++++++++++++++ 15 files changed, 1513 insertions(+) create mode 100644 .gitea/workflows/publish-docs.yaml create mode 100644 CMakePresets.json create mode 100644 docs/assets/css/extensions/tabbed.css create mode 100644 docs/assets/css/extra.css create mode 100644 docs/docker/Dockerfile create mode 100644 docs/docker/Dockerfile.dev create mode 100644 docs/docker/docker-compose.yml create mode 100644 docs/docker/requirements.txt create mode 100644 docs/docker/runtime.txt create mode 100644 docs/index.md create mode 100644 docs/python/developer_guide.md create mode 100644 docs/python/installation.md create mode 100644 docs/python/usage.md create mode 100644 mkdocs.yml diff --git a/.gitea/workflows/publish-docs.yaml b/.gitea/workflows/publish-docs.yaml new file mode 100644 index 0000000..da24dc1 --- /dev/null +++ b/.gitea/workflows/publish-docs.yaml @@ -0,0 +1,41 @@ +name: MkDocs Subpath Deploy + +on: + push: + branches: + - andrea-dev # Trigger on main branch + +jobs: + build-and-deploy: + runs-on: mildpub # Runner that can access to SSH_YFINPUB_HOST + + steps: + - name: Checkout del codice + uses: actions/checkout@v4 + + - name: Configura Python + uses: actions/setup-python@v5 + with: + python-version: '3.x' + + - name: Installa dipendenze + run: | + python -m pip install --upgrade pip + pip install mkdocs-material + pip install -r requirements.txt + + - name: Build del sito + run: mkdocs build + + - name: Deploy via SSH (SCP) + uses: https://github.com/appleboy/scp-action@master + with: + host: ${{ vars.SSH_YFINPUB_HOST }} + username: ${{ vars.SSH_YFINPUB_USER }} + key: ${{ secrets.MILD_PUB }} + port: 22 + source: "site/*" + # Il percorso sul server deve corrispondere alla tua sottopagina + target: "/var/www/docs/cmt/uLib/" + strip_components: 1 # Rimuove la cartella "site/" e mette solo il contenuto + rm: true # Pulisce la cartella prima di copiare (opzionale, stile Vercel) \ No newline at end of file diff --git a/.gitignore b/.gitignore index 07b2233..f51005d 100644 --- a/.gitignore +++ b/.gitignore @@ -12,3 +12,4 @@ src/Python/uLib/*.so* src/Python/uLib/*.pyd src/Python/uLib/*.pyc src/Python/uLib/__pycache__ +src/Python/uLib/.nfs* diff --git a/CMakePresets.json b/CMakePresets.json new file mode 100644 index 0000000..99c234f --- /dev/null +++ b/CMakePresets.json @@ -0,0 +1,16 @@ +{ + "version": 8, + "configurePresets": [ + { + "name": "andrea", + "displayName": "Custom configure preset", + "description": "Sets Ninja generator, build and install directory", + "generator": "Ninja", + "binaryDir": "${sourceDir}/out/build/${presetName}", + "cacheVariables": { + "CMAKE_BUILD_TYPE": "Debug", + "CMAKE_INSTALL_PREFIX": "${sourceDir}/out/install/${presetName}" + } + } + ] +} \ No newline at end of file diff --git a/docs/assets/css/extensions/tabbed.css b/docs/assets/css/extensions/tabbed.css new file mode 100644 index 0000000..7fc9ae2 --- /dev/null +++ b/docs/assets/css/extensions/tabbed.css @@ -0,0 +1,41 @@ +.tabbed-set { + display: flex; + position: relative; + flex-wrap: wrap; +} + +.tabbed-set .highlight { + background: #ddd; +} + +.tabbed-set .tabbed-content { + display: none; + order: 99; + width: 100%; +} + +.tabbed-set label { + width: auto; + margin: 0 0.5em; + padding: 0.25em; + font-size: 120%; + cursor: pointer; + color: #ffffff !important; +} + +.tabbed-set input { + position: absolute; + opacity: 0; +} + +.tabbed-set input:nth-child(n+1) { + color: #333333; +} + +.tabbed-set input:nth-child(n+1):checked + label { + color: cyan !important; +} + +.tabbed-set input:nth-child(n+1):checked + label + .tabbed-content { + display: block; +} \ No newline at end of file diff --git a/docs/assets/css/extra.css b/docs/assets/css/extra.css new file mode 100644 index 0000000..d3d01e7 --- /dev/null +++ b/docs/assets/css/extra.css @@ -0,0 +1,17 @@ +@import "extensions/tabbed.css"; + +.md-grid { + max-width: 100%; +} + +.md-main__inner { + margin-top: 0; + padding-top: 0; +} + +.md-sidebar--secondary { + right: 1.5rem; + top: 4.8rem; + transform: none; + width: 18rem; +} diff --git a/docs/docker/Dockerfile b/docs/docker/Dockerfile new file mode 100644 index 0000000..876ba06 --- /dev/null +++ b/docs/docker/Dockerfile @@ -0,0 +1,30 @@ +# Stage 1: Build the static site using MkDocs +FROM python:3.9-slim-buster as builder + +# Set the working directory +WORKDIR /app + +# Copy the requirements file +COPY requirements.txt . + +# Install the Python dependencies +RUN pip install --no-cache-dir -r requirements.txt + +# Copy the rest of the application files +COPY ../.. . + +# Build the MkDocs site +RUN mkdocs build + + +# Stage 2: Serve the static files with Nginx +FROM nginx:alpine + +# Copy the built site from the builder stage +COPY --from=builder /app/site /usr/share/nginx/html + +# Expose port 80 for the web server +EXPOSE 80 + +# Command to run Nginx in the foreground +CMD ["nginx", "-g", "daemon off;"] diff --git a/docs/docker/Dockerfile.dev b/docs/docker/Dockerfile.dev new file mode 100644 index 0000000..03e90fc --- /dev/null +++ b/docs/docker/Dockerfile.dev @@ -0,0 +1,14 @@ +# Dockerfile for development with live-reloading +FROM python:3.9-slim-buster + +WORKDIR /app + +# Copy and install dependencies +COPY requirements.txt . +RUN pip install --no-cache-dir -r requirements.txt + +# Expose the port MkDocs serve will run on +EXPOSE 8000 + +# Command to run the development server +CMD ["mkdocs", "serve", "--dev-addr", "0.0.0.0:8000"] diff --git a/docs/docker/docker-compose.yml b/docs/docker/docker-compose.yml new file mode 100644 index 0000000..72f8e0a --- /dev/null +++ b/docs/docker/docker-compose.yml @@ -0,0 +1,13 @@ +version: '3.8' + +services: + mkdocs: + build: + context: . + dockerfile: Dockerfile.dev + ports: + - "8000:8000" + volumes: + - ../..:/app + environment: + - GIT_DISCOVERY_ACROSS_FILESYSTEM=1 diff --git a/docs/docker/requirements.txt b/docs/docker/requirements.txt new file mode 100644 index 0000000..c3d1317 --- /dev/null +++ b/docs/docker/requirements.txt @@ -0,0 +1,17 @@ +# ------------------------------------------------------------------ +# MkDocs runtime dependencies for the docs Docker image +# ------------------------------------------------------------------ + +# Core: theme (provides mkdocs itself as a transitive dep) +mkdocs-material==9.7.1 + +# pymdownx.* extensions used in mkdocs.yml: +# arithmatex, highlight, superfences, tabbed, details, blocks.caption +# (also a hard dep of mkdocs-material, pinned here for reproducibility) +pymdown-extensions>=10.0 + +# Markdown math rendering support (arithmatex generic mode) +# JS side is loaded via CDN (polyfill.io + MathJax), no extra Python pkg needed + +# Optional: PDF export plugin (exporter: block, currently commented out in mkdocs.yml) +mkdocs-exporter \ No newline at end of file diff --git a/docs/docker/runtime.txt b/docs/docker/runtime.txt new file mode 100644 index 0000000..548d713 --- /dev/null +++ b/docs/docker/runtime.txt @@ -0,0 +1 @@ +3.7 \ No newline at end of file diff --git a/docs/index.md b/docs/index.md new file mode 100644 index 0000000..70e03c7 --- /dev/null +++ b/docs/index.md @@ -0,0 +1,63 @@ +# uLib + +[![DOI](https://zenodo.org/badge/36926725.svg)](https://zenodo.org/badge/latestdoi/36926725) + +**uLib** is the base toolkit library for the **CMT (Cosmic Muon Tomography)** project, developed at the University of Padova and INFN Sezione di Padova, Italy. + +It provides: + +- **Core** – object model, timers, configuration, UUID utilities. +- **Math** – linear algebra (Eigen3), structured grids, voxel images, ray-tracing, image filters. +- **Python bindings** – full pybind11 interface for scripting and analysis workflows. +- Optional **CUDA** acceleration for voxel filtering (transparent RAM ↔ VRAM management). + +--- + +## Quick Start + +=== "Users (pip / poetry)" + ```bash + # Activate your conda/micromamba environment first + micromamba activate mutom + + poetry install # CPU build + USE_CUDA=ON poetry install # GPU build + ``` + +=== "Developers (CMake)" + ```bash + conan install . --output-folder=build --build=missing + cmake --preset conan-release + cmake --build build --target uLib_python -j$(nproc) + + export PYTHONPATH="$(pwd)/build/src/Python:$(pwd)/src/Python" + ``` + +Then in Python: + +```python +import uLib + +# Core +timer = uLib.Core.Timer() +timer.Start() + +# Math +grid = uLib.Math.StructuredGrid([10, 10, 10]) +grid.SetSpacing([1.0, 1.0, 1.0]) + +img = uLib.Math.VoxImage([10, 10, 10]) +img.SetValue(0, 3.14) +print(img.GetValue(0)) +``` + +--- + +## Documentation Sections + +| Section | Description | +|---|---| +| [Python – Installation](python/installation.md) | Environment setup, user install, developer build | +| [Python – API Usage](python/usage.md) | Full API reference with examples | +| [Python – Developer Guide](python/developer_guide.md) | Adding bindings, running tests, build details | +| [C++ Build – Usage & CUDA](usage/usage.md) | CMake build, CUDA configuration | diff --git a/docs/python/developer_guide.md b/docs/python/developer_guide.md new file mode 100644 index 0000000..dea4495 --- /dev/null +++ b/docs/python/developer_guide.md @@ -0,0 +1,179 @@ +# Developer Guide – Python Bindings + +This guide is aimed at contributors who want to extend or modify the Python bindings for `uLib`. + +--- + +## Repository Layout + +``` +ulib/ +├── src/ +│ └── Python/ +│ ├── module.cpp # pybind11 module entry point +│ ├── core_bindings.cpp # uLib::Core bindings +│ ├── math_bindings.cpp # uLib::Math bindings +│ ├── math_filters_bindings.cpp# VoxImageFilter bindings +│ ├── CMakeLists.txt # builds uLib_python shared lib +│ ├── testing/ # Python unit tests +│ │ ├── pybind_test.py +│ │ ├── core_pybind_test.py +│ │ ├── math_pybind_test.py +│ │ └── math_filters_test.py +│ └── uLib/ # Python package (uLib_python.so lands here) +│ └── __init__.py +├── build_python.py # poetry build hook (calls CMake) +├── pyproject.toml # poetry metadata +└── condaenv.yml # conda/micromamba environment +``` + +--- + +## Adding a New Binding + +All bindings live in the four source files listed above. The module entry point `module.cpp` calls `init_core()`, `init_math()`, and `init_math_filters()` in order. + +### 1. Pick (or create) the right binding file + +| C++ header location | Binding file | +|---|---| +| `src/Core/` | `core_bindings.cpp` | +| `src/Math/` (geometry, grids, VoxImage) | `math_bindings.cpp` | +| `src/Math/VoxImageFilter*.hpp` | `math_filters_bindings.cpp` | + +### 2. Add the `#include` directive + +```cpp +// math_bindings.cpp +#include "Math/MyNewClass.h" +``` + +### 3. Write the pybind11 binding inside the appropriate `init_*` function + +```cpp +void init_math(py::module_ &m) { + // ... existing bindings ... + + py::class_(m, "MyNewClass") + .def(py::init<>()) + .def("MyMethod", &MyNewClass::MyMethod) + .def("AnotherMethod", &MyNewClass::AnotherMethod, + py::arg("x"), py::arg("y") = 0.0f); +} +``` + +### 4. Rebuild only the Python target + +```bash +cmake --build build --target uLib_python -j$(nproc) +``` + +### 5. Write a Python test + +Add a new test class to the relevant test file (or create a new one under `src/Python/testing/`): + +```python +# src/Python/testing/math_pybind_test.py +class TestMyNewClass(unittest.TestCase): + def test_basic(self): + obj = uLib.Math.MyNewClass() + result = obj.MyMethod() + self.assertAlmostEqual(result, expected_value) +``` + +Register the test in `src/Python/CMakeLists.txt` if you add a new file: + +```cmake +add_test(NAME pybind_my_new + COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/testing/my_new_test.py) +set_tests_properties(pybind_my_new PROPERTIES + ENVIRONMENT "PYTHONPATH=$:${PROJECT_SOURCE_DIR}/src/Python") +``` + +--- + +## Build System Details + +### CMakeLists.txt (`src/Python/`) + +`pybind11_add_module` compiles the shared library `uLib_python` and links it against the C++ static/shared libraries `uLibCore` and `uLibMath`. The install target copies the `.so` into the standard library directory. + +```cmake +pybind11_add_module(uLib_python + module.cpp core_bindings.cpp math_bindings.cpp math_filters_bindings.cpp) + +target_link_libraries(uLib_python PRIVATE uLibCore uLibMath) +``` + +### poetry / build_python.py + +`pyproject.toml` declares `build_python.py` as the custom build hook. When `poetry install` or `poetry build` is invoked it: + +1. Calls `cmake -DCMAKE_LIBRARY_OUTPUT_DIRECTORY= ...` in `build_python/`. +2. Builds only the `uLib_python` target. +3. The resulting `.so` is placed inside `src/Python/uLib/` so it is picked up by Poetry as a package data file. + +The `USE_CUDA` environment variable gates CUDA support at build time: + +```bash +USE_CUDA=ON poetry install # with CUDA +USE_CUDA=OFF poetry install # CPU only (default) +``` + +--- + +## Running All Tests + +```bash +# From the repository root, with PYTHONPATH set: +export PYTHONPATH="$(pwd)/build/src/Python:$(pwd)/src/Python" + +python -m pytest src/Python/testing/ -v +``` + +Or through CMake's test runner (after building the full project): + +```bash +cd build +ctest --output-on-failure -R pybind +``` + +Expected output (all passing): + +``` + Start 1: pybind_general +1/4 Test #1: pybind_general ............. Passed + Start 2: pybind_core +2/4 Test #2: pybind_core ................ Passed + Start 3: pybind_math +3/4 Test #3: pybind_math ................ Passed + Start 4: pybind_math_filters +4/4 Test #4: pybind_math_filters ........ Passed +``` + +--- + +## Memory Management Notes + +`uLib::Vector` has explicit GPU memory management. When wrapping methods that return references to internal data, use `py::return_value_policy::reference_internal` to avoid dangling references: + +```cpp +.def("Data", &VoxImage::Data, + py::return_value_policy::reference_internal) +``` + +For objects held by `std::unique_ptr` without Python-side deletion, use `py::nodelete`: + +```cpp +py::class_>(m, "AbstractVoxImageFilter") +``` + +--- + +## Useful References + +- [pybind11 documentation](https://pybind11.readthedocs.io) +- [pybind11 – STL containers](https://pybind11.readthedocs.io/en/stable/advanced/cast/stl.html) +- [pybind11 – Eigen integration](https://pybind11.readthedocs.io/en/stable/advanced/cast/eigen.html) +- [CMake – pybind11 integration](https://pybind11.readthedocs.io/en/stable/compiling.html) diff --git a/docs/python/installation.md b/docs/python/installation.md new file mode 100644 index 0000000..281b164 --- /dev/null +++ b/docs/python/installation.md @@ -0,0 +1,146 @@ +# Python Installation + +The `uLib` Python package exposes the Core and Math C++ libraries via [pybind11](https://pybind11.readthedocs.io) bindings. There are two ways to install it: as an **end user** (pre-built wheel / pip) or as a **developer** (editable build from source). + +--- + +## Prerequisites + +`uLib` depends on native C++ libraries that must be compiled. Ensure the following are available in your environment before installing: + +| Dependency | Minimum version | Notes | +|---|---|---| +| Python | 3.9 | | +| CMake | 3.12 | | +| pybind11 | 2.6.0 | | +| Conan | 2.x | for Eigen3 / Boost | +| micromamba / conda | any | recommended – provides ROOT, VTK | + +### Creating the `mutom` Conda/Micromamba Environment + +A ready-to-use environment definition is provided as `condaenv.yml` at the repository root. + +=== "Micromamba" + ```bash + micromamba env create -f condaenv.yml + micromamba activate mutom + ``` + +=== "Conda" + ```bash + conda env create -f condaenv.yml + conda activate mutom + ``` + +The environment installs CMake, Conan, ROOT, VTK, and the compiler toolchain. + +> **CUDA (optional)** +> If you want GPU-accelerated voxel filtering, you also need NVCC inside the environment: +> ```bash +> micromamba install cuda-nvcc -c conda-forge +> ``` + +--- + +## User Installation (wheel / pip) + +Once the native dependencies are present in your environment, install the package with Poetry or pip: + +```bash +# Activate your environment first +micromamba activate mutom + +# Build and install (CUDA disabled by default) +poetry install + +# Build and install with CUDA support +USE_CUDA=ON poetry install +``` + +After installation the module is importable from anywhere in the environment: + +```python +import uLib +print(dir(uLib.Core)) +print(dir(uLib.Math)) +``` + +--- + +## Developer Installation (editable / in-tree build) + +For development you typically want to skip the packaging layer and work directly against the CMake build tree. + +### Step 1 – Install Conan dependencies + +```bash +conan profile detect # first time only +conan install . --output-folder=build --build=missing +``` + +### Step 2 – Configure and build + +```bash +# Standard release build +cmake --preset conan-release + +# …or manually +cmake -B build \ + -DCMAKE_TOOLCHAIN_FILE=build/conan_toolchain.cmake \ + -DCMAKE_BUILD_TYPE=Release \ + -DUSE_CUDA=OFF # set to ON when a GPU is available + +cmake --build build --target uLib_python -j$(nproc) +``` + +The shared library (`uLib_python*.so`) is written to `build/src/Python/`. + +### Step 3 – Make the module importable + +Point `PYTHONPATH` at the build output **and** the Python source directory (the latter carries the `uLib/__init__.py` that stitches sub-modules together): + +```bash +export PYTHONPATH="$(pwd)/build/src/Python:$(pwd)/src/Python:$PYTHONPATH" +python -c "import uLib; print(uLib.__version__)" +``` + +Or, for a one-shot check: + +```bash +PYTHONPATH="build/src/Python:src/Python" python src/Python/testing/pybind_test.py +``` + +### Step 4 – Run the tests + +CMake registers the Python tests alongside the C++ ones; use `ctest` from the build directory: + +```bash +cd build +ctest --output-on-failure -R pybind +``` + +Individual test scripts can also be run directly once `PYTHONPATH` is set: + +```bash +python src/Python/testing/core_pybind_test.py +python src/Python/testing/math_pybind_test.py +python src/Python/testing/math_filters_test.py +``` + +--- + +## Verifying the Installation + +```python +import uLib + +# Core module +obj = uLib.Core.Object() +timer = uLib.Core.Timer() +timer.Start() +elapsed = timer.StopWatch() # float, seconds + +# Math module +v3 = uLib.Math.Vector3f([1.0, 0.0, 0.0]) +print(v3[0]) # 1.0 +``` diff --git a/docs/python/usage.md b/docs/python/usage.md new file mode 100644 index 0000000..3b1a771 --- /dev/null +++ b/docs/python/usage.md @@ -0,0 +1,373 @@ +# Python API Usage + +The `uLib` Python package is split into two sub-modules mirroring the C++ library: + +| Sub-module | Contents | +|---|---| +| `uLib.Core` | Low-level utilities: `Object`, `Timer`, `Options`, `TypeRegister` | +| `uLib.Math` | Geometry, grids, voxel images, ray-tracing, image filters | + +```python +import uLib +# Sub-modules are accessible as attributes +uLib.Core # core utilities +uLib.Math # mathematical structures +``` + +--- + +## uLib.Core + +### Object + +Base class for uLib objects; exposed to Python for type-hierarchy purposes. + +```python +obj = uLib.Core.Object() +copy = obj.DeepCopy() +``` + +### Timer + +Precision wall-clock timer. + +```python +import time +timer = uLib.Core.Timer() +timer.Start() +time.sleep(0.5) +elapsed = timer.StopWatch() # returns elapsed seconds as float +print(f"Elapsed: {elapsed:.3f} s") +``` + +### Options + +Wraps Boost.ProgramOptions for INI-style configuration files. + +```python +opt = uLib.Core.Options("My Program") +opt.parse_config_file("config.ini") # load settings +n = opt.count("my_key") # check if key exists +opt.save_config_file("out.ini") +``` + +--- + +## uLib.Math – Linear Algebra + +The math module exposes Eigen3 vectors and matrices as well-typed Python objects with NumPy interoperability. + +### Fixed-size Vectors + +```python +import numpy as np +import uLib + +# Construct from list +v3 = uLib.Math.Vector3f([1.0, 2.0, 3.0]) +print(v3[0], v3[1], v3[2]) # 1.0 2.0 3.0 + +# Construct from NumPy array +arr = np.array([4.0, 5.0, 6.0], dtype=np.float32) +v3b = uLib.Math.Vector3f(arr) + +# Zero-initialise +v4d = uLib.Math.Vector4d() # all zeros + +# Available types +# Vector1f / 2f / 3f / 4f (float32) +# Vector1d / 2d / 3d / 4d (float64) +# Vector1i / 2i / 3i / 4i (int32) +``` + +### Fixed-size Matrices + +```python +# 2-by-2 float matrix +m2f = uLib.Math.Matrix2f() +m2f[0, 0] = 1; m2f[0, 1] = 2 +m2f[1, 0] = 3; m2f[1, 1] = 4 + +# From list (row-major) +m4f = uLib.Math.Matrix4f([1,0,0,0, 0,1,0,0, 0,0,1,0, 0,0,0,1]) + +# From NumPy (2-D array) +mat = np.eye(3, dtype=np.float32) +m3f = uLib.Math.Matrix3f(mat) + +# Dynamic matrices +mXf = uLib.Math.MatrixXf(4, 4) # 4×4 float, zeros +``` + +### Homogeneous Types + +```python +# HPoint3f – a 3-D point in homogeneous coordinates (w = 1) +p = uLib.Math.HPoint3f(1.0, 2.0, 3.0) + +# HVector3f – a free vector (w = 0) +v = uLib.Math.HVector3f(0.0, 1.0, 0.0) + +# HLine3f – a parametric ray +line = uLib.Math.HLine3f() +line.origin = uLib.Math.HPoint3f(0, 0, 0) +line.direction = uLib.Math.HVector3f(0, 0, 1) +``` + +--- + +## uLib.Math – Transforms and Geometry + +### AffineTransform + +A rigid-body / affine transform stored as a 4×4 matrix. + +```python +tf = uLib.Math.AffineTransform() + +tf.SetPosition([1.0, 0.0, 0.0]) # translate +tf.Translate([0.0, 1.0, 0.0]) # cumulative translate +tf.Scale([2.0, 2.0, 2.0]) # uniform scale +tf.Rotate(uLib.Math.Vector3f([0, 0, 3.14159])) # Euler angles (rad) + +mat4 = tf.GetWorldMatrix() # 4×4 matrix +pos = tf.GetPosition() # Vector3f +``` + +### Geometry + +Inherits `AffineTransform`; converts points between world and local frames. + +```python +geo = uLib.Math.Geometry() +geo.SetPosition([1.0, 1.0, 1.0]) + +world_pt = uLib.Math.Vector4f([2.0, 3.0, 2.0, 1.0]) +local_pt = geo.GetLocalPoint(world_pt) +back = geo.GetWorldPoint(local_pt) +# back ≈ [2, 3, 2, 1] +``` + +### ContainerBox + +An axis-aligned bounding box with an associated transform. + +```python +box = uLib.Math.ContainerBox() +box.SetOrigin([-1.0, -1.0, -1.0]) +box.SetSize([2.0, 2.0, 2.0]) +print(box.GetSize()) # [2, 2, 2] +``` + +--- + +## uLib.Math – Structured Grids + +### StructuredGrid (3-D) + +A 3-D voxel grid (origin, spacing, and integer dimensions). + +```python +dims = uLib.Math.Vector3i([10, 10, 10]) +grid = uLib.Math.StructuredGrid(dims) +grid.SetSpacing([1.0, 1.0, 1.0]) +grid.SetOrigin([0.0, 0.0, 0.0]) + +print(grid.GetSpacing()) # [1, 1, 1] +print(grid.IsInsideBounds([5, 5, 5, 1])) # True +idx = grid.Find([2.5, 2.5, 2.5]) # returns grid cell index +``` + +### Structured2DGrid / Structured4DGrid + +```python +grid2d = uLib.Math.Structured2DGrid() +grid2d.SetDims([100, 100]) +grid2d.SetPhysicalSpace([0, 0], [1, 1]) +print(grid2d.GetSpacing()) +``` + +--- + +## uLib.Math – VoxImage + +`VoxImage` is a 3-D voxel volume where each cell stores a `Voxel` ( `.Value` + `.Count`). + +```python +dims = uLib.Math.Vector3i([20, 20, 20]) +img = uLib.Math.VoxImage(dims) +img.SetSpacing([0.5, 0.5, 0.5]) + +# Access by linear index +img.SetValue(0, 42.0) +print(img.GetValue(0)) # 42.0 + +# Access by 3-D index +img.SetValue(uLib.Math.Vector3i([1, 1, 1]), 7.5) +print(img.GetValue(uLib.Math.Vector3i([1, 1, 1]))) # 7.5 + +# Clipping / masking helpers +cropped = img.clipImage(uLib.Math.Vector3i([2, 2, 2]), + uLib.Math.Vector3i([18, 18, 18])) +masked = img.maskImage(0.0, 100.0, 0.0) # mask outside [0, 100] + +# I/O +img.ExportToVti("output.vti") +img.ImportFromVti("output.vti") +``` + +### Voxel (element type) + +```python +vox = uLib.Math.Voxel() +vox.Value = 1.5 +vox.Count = 3 + +data = img.Data() # returns the underlying Vector_Voxel +vox0 = data[0] +print(vox0.Value, vox0.Count) +``` + +--- + +## uLib.Math – VoxRaytracer + +Performs ray-tracing through a `StructuredGrid` and returns per-voxel chord lengths. + +```python +import numpy as np +import uLib + +grid = uLib.Math.StructuredGrid([10, 10, 10]) +grid.SetSpacing([1.0, 1.0, 1.0]) +grid.SetOrigin([0.0, 0.0, 0.0]) + +rt = uLib.Math.VoxRaytracer(grid) + +# Trace a ray between two homogeneous points (x, y, z, w=1) +p1 = np.array([0.5, 0.5, -1.0, 1.0], dtype=np.float32) +p2 = np.array([0.5, 0.5, 11.0, 1.0], dtype=np.float32) +result = rt.TraceBetweenPoints(p1, p2) + +print("Voxels crossed:", result.Count()) +print("Total length :", result.TotalLength()) + +elements = result.Data() +for i in range(result.Count()): + print(f" vox_id={elements[i].vox_id} L={elements[i].L:.4f}") +``` + +--- + +## uLib.Math – Image Filters + +All filters share the same interface: construct with a kernel size, attach a `VoxImage`, optionally set parameters, then call `.Run()`. + +```python +import uLib + +dims = uLib.Math.Vector3i([10, 10, 10]) +img = uLib.Math.VoxImage(dims) +for i in range(10**3): + img.SetValue(i, float(i)) + +kernel_dims = uLib.Math.Vector3i([3, 3, 3]) +``` + +### Linear (Gaussian / Box) Filter + +```python +filt = uLib.Math.VoxFilterAlgorithmLinear(kernel_dims) +filt.SetImage(img) +filt.SetKernelNumericXZY([1.0] * 27) # uniform box kernel, length = product of dims +filt.Run() +``` + +### ABTrim Filter + +Applies alpha-beta trimming to remove outliers before averaging. + +```python +filt = uLib.Math.VoxFilterAlgorithmAbtrim(kernel_dims) +filt.SetImage(img) +filt.SetKernelNumericXZY([1.0] * 27) +filt.SetABTrim(2, 2) # trim 2 low and 2 high values +filt.Run() +``` + +### Bilateral Filter + +Edge-preserving smoothing controlled by a spatial sigma (from the kernel shape) and an intensity sigma. + +```python +filt = uLib.Math.VoxFilterAlgorithmBilateral(kernel_dims) +filt.SetImage(img) +filt.SetKernelNumericXZY([1.0] * 27) +filt.SetIntensitySigma(0.3) +filt.Run() +``` + +### Threshold Filter + +Zeros voxels below a threshold. + +```python +filt = uLib.Math.VoxFilterAlgorithmThreshold(kernel_dims) +filt.SetImage(img) +filt.SetKernelNumericXZY([1.0] * 27) +filt.SetThreshold(0.5) +filt.Run() +``` + +### Median Filter + +```python +filt = uLib.Math.VoxFilterAlgorithmMedian(kernel_dims) +filt.SetImage(img) +filt.SetKernelNumericXZY([1.0] * 27) +filt.Run() +``` + +--- + +## uLib.Math – Accumulators + +Accumulators collect scalar samples and return a summary statistic. + +```python +# Arithmetic mean +acc = uLib.Math.Accumulator_Mean_f() +acc(10.0) +acc(20.0) +mean = acc() # 15.0 + +# Alpha-beta trimmed mean +acc2 = uLib.Math.Accumulator_ABTrim_f() +acc2.SetABTrim(0.1, 0.1) # trim bottom 10 % and top 10 % +acc2 += 1.0 +acc2 += 9999.0 # outlier +acc2 += 5.0 +result = acc2() # trimmed mean ≈ 3.0 +``` + +--- + +## Dynamic Vectors (`uLib.Math.Vector_*`) + +Typed dynamic arrays backed by `uLib::Vector` with optional CUDA memory management. + +```python +# Integer vector +vi = uLib.Math.Vector_i() +vi.append(1); vi.append(2); vi.append(3) +print(len(vi), vi[0]) + +# Float vector with CUDA management +vf = uLib.Math.Vector_f() +vf.append(1.5) +vf.MoveToVRAM() # copy to GPU (no-op when CUDA is absent) +vf.MoveToRAM() # copy back to CPU + +# Other types: Vector_ui, Vector_l, Vector_ul, Vector_d +# Compound element types: Vector_Vector3f, Vector_Vector4f, Vector_Voxel … +``` diff --git a/mkdocs.yml b/mkdocs.yml new file mode 100644 index 0000000..2681b5b --- /dev/null +++ b/mkdocs.yml @@ -0,0 +1,561 @@ +# site_name: uLib Documentation +# site_description: CMT Cosmic Muon Tomography – uLib toolkit +# site_author: Andrea Rigoni Garola +# repo_url: https://github.com/cmt/ulib +# docs_dir: docs + +# +--------------------------------------------------------------------------------------------------------+ +# | | +# | This is the main file used by MkDocs to build the pages. | +# | It contains a lot of information and settings for you to read and use. | +# | Comments may contain "Read More" URLs to more in-depth documentation about the option for you to read. | +# | | +# | You can check out https://www.mkdocs.org/user-guide/configuration/ for a more detailed explanation of | +# | all the options MkDocs offers by default. | +# | | +# +------------------------------------------------- NOTE -------------------------------------------------+ +# | | +# | Some of the options listed here are only available through the usage of Material for MkDocs. | +# | Those options will usually have a link to the docs of this Theme and also mention "Material" as name. | +# | The actual name of the theme is "Material for MkDocs" and "Material" is used for simplicity reasons. | +# | | +# +--------------------------------------------------------------------------------------------------------+ + +# +--------------------------------------------------------------------------------------------------------+ +# | | +# | Main Page Settings for MkDocs. | +# | Those settings are site name, site description, Site author and also Site URL (Canonical URL) | +# | | +# | Read More: | +# | - https://www.mkdocs.org/user-guide/configuration/#site_name | +# | - https://www.mkdocs.org/user-guide/configuration/#site_description | +# | - https://www.mkdocs.org/user-guide/configuration/#site_author | +# | - https://www.mkdocs.org/user-guide/configuration/#site_url | +# | | +# +--------------------------------------------------------------------------------------------------------+ +site_name: OpenCMT uLib Documentation +site_url: https://docs.mildstone.org/uLib/ # 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Incompatible with "toc.integrate" + #- navigation.sections # Render top sections as groups. + - navigation.tabs # Render top sections as tabs at the top. + #- navigation.tabs.sticky # Tabs won't disappear when scrolling down. Requires "navigation.tabs". + #- navigation.top # Adds a "Back to top" that is shown when scrolling up. + #- navigation.tracking # Updates the url with highlighted section anchor. + + # Search + # + #- search.highlight # Search will highlight the searched word(s) on the page.* + #- search.share # Adds an option to share a search query link.* + #- search.suggest # Search will suggest the likeliest completion for a word.* + + # Table of Contents + # + #- toc.integrate # Include the TOC sections in the left navugation. + + # +------------------------------------------------------------------------------------------------------+ + # | | + # | The "icon" section allows you to define a icon to use for the logo and/or repository. | + # | | + # | To use already available icons will you need to set the right path for it, depending on which you | + # | want to use. | + # | | + # | Available icons: | + # | - FontAwesome | + # | - Brands: fontawesome/brands/... (https://fontawesome.com/icons?d=gallery&p=2&s=brands&m=free) | + # | - Regular: fontawesome/regular/... (https://fontawesome.com/icons?d=gallery&p=2&s=regular&m=free) | + # | - Solid: fontawesome/solid/... (https://fontawesome.com/icons?d=gallery&p=2&s=solid&m=free) | + # | | + # | - Material Design Icons: material/... (https://materialdesignicons.com/) | + # | | + # | - Octicons: octicons/... (https://primer.style/octicons/) | + # | | + # | You can also define your own Image for the logo. To do that, remove the "logo" option from "icon" | + # | instead add a "logo" option on the same level as the "icon" one, where you then set the path | + # | (relative to the "docs_dir") to the icon to use. Supported are all images types, including SVG. | + # | | + # | Read More: | + # | - https://squidfunk.github.io/mkdocs-material/setup/changing-the-logo-and-icons/#logo | + # | | + # +------------------------------------------------------------------------------------------------------+ + icon: + logo: 'material/library' + repo: 'material/library' + + # +------------------------------------------------------------------------------------------------------+ + # | | + # | The "admonition" option allows you to set a different icon for each admonition type. | + # | | + # | This is currently a Insiders-only feature. (Last update: 7th October 2021) | + # | https://squidfunk.github.io/mkdocs-material/insiders/ | + # | | + # | Supported are all bundled icons: | + # | - FontAwesome | + # | - Brands: fontawesome/brands/... (https://fontawesome.com/icons?d=gallery&p=2&s=brands&m=free) | + # | - Regular: fontawesome/regular/... (https://fontawesome.com/icons?d=gallery&p=2&s=regular&m=free) | + # | - Solid: fontawesome/solid/... (https://fontawesome.com/icons?d=gallery&p=2&s=solid&m=free) | + # | | + # | - Material Design Icons: material/... (https://materialdesignicons.com/) | + # | | + # | - Octicons: octicons/... (https://primer.style/octicons/) | + # | | + # | You can also create and use your own icons. See the documentation for more information. | + # | | + # | Read More: | + # | - https://squidfunk.github.io/mkdocs-material/reference/admonitions/#changing-the-icons | + # | | + # +------------------------------------------------------------------------------------------------------+ + #admonition: + # note: 'octicons/tag-16' + # abstract: 'octicons/checklist-16' + # info: 'octicons/info-16' + # tip: 'octicons/squirrel-16' + # success: 'octicons/check-16' + # question: 'octicons/question-16' + # warning: 'octicons/alert-16' + # failure: 'octicons/x-circle-16' + # danger: 'octicons/zap-16' + # bug: 'octicons/bug-16' + # example: 'octicons/beaker-16' + # quote: 'octicons/quote-16' + +# +--------------------------------------------------------------------------------------------------------+ +# | | +# | With the "extra_css" option can you add your own (S)CSS files to enhance the documentation. | +# | | +# | The path to the file is relative to the "docs_dir". | +# | | +# | Read More: | +# | - https://www.mkdocs.org/user-guide/configuration/#extra_css | +# | | +# +--------------------------------------------------------------------------------------------------------+ +extra_css: + - assets/css/extra.css + +# +--------------------------------------------------------------------------------------------------------+ +# | | +# | Similar to the "extra_css" option does the "extra_javascript" option allow you to set custom JS files | +# | to add extra featurues. | +# | | +# | The path to the file is relative to the "docs_dir". | +# | | +# | Read More: | +# | - https://www.mkdocs.org/user-guide/configuration/#extra_javascript | +# | | +# +--------------------------------------------------------------------------------------------------------+ +extra_javascript: + - https://polyfill.io/v3/polyfill.min.js?features=es6 + - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js + +# +--------------------------------------------------------------------------------------------------------+ +# | | +# | The "extra" section contains pretty much anything you want, as long as it is a valid key-value pair. | +# | | +# | Material uses this section for different custom settings that wouldn't fit in the theme section. | +# | | +# | Read More: | +# | - https://www.mkdocs.org/user-guide/configuration/#extra | +# | | +# +--------------------------------------------------------------------------------------------------------+ +extra: + # +------------------------------------------------------------------------------------------------------+ + # | | + # | The social section allows you to set a list of entries which would be displayed in the footer of the | + # | page. | + # | | + # | Each entry has the exact same options: | + # | - icon: Path to the SVG icon to use. See "icon" section for available icon sets. | + # | - link: URL to which the icon should link. | + # | - name: Optional Name that would be displayed as title on hover. | + # | | + # | Read More: | + # | - https://squidfunk.github.io/mkdocs-material/setup/setting-up-the-footer/#social-links | + # | | + # +------------------------------------------------------------------------------------------------------+ + social: + - icon: 'fontawesome/brands/github' + link: 'https://github.com/Andre601/mkdocs-template' + + # +------------------------------------------------------------------------------------------------------+ + # | | + # | Allows you to hide the "Made with Material for MkDocs" text in the footer of the pages by setting | + # | this to "true". | + # | | + # | Read More: | + # | - https://squidfunk.github.io/mkdocs-material/setup/setting-up-the-footer/#generator-notice | + # | | + # +------------------------------------------------------------------------------------------------------+ + #generator: true + + # +------------------------------------------------------------------------------------------------------+ + # | | + # | The "manifest" option allows you to define a .manifest file to use. | + # | | + # | A .manifest file makes the doc act like a web-application and tells it how to behave when installed. | + # | | + # | Read More: | + # | - https://squidfunk.github.io/mkdocs-material/reference/meta-tags/#adding-a-web-app-manifest | + # | | + # +------------------------------------------------------------------------------------------------------+ + #manifest: manifest.webmanifest + + # +------------------------------------------------------------------------------------------------------+ + # | | + # | The "alternate" option can be used to create a selector to switch languages. | + # | | + # | Using this requires you to create a specific, more complicated MkDocs setup. | + # | | + # | A Setup Guide for multi-language docs can be found here: | + # | https://github.com/squidfunk/mkdocs-material/discussions/2346 | + # | | + # | Read More: | + # | - https://squidfunk.github.io/mkdocs-material/setup/changing-the-language/#site-language-selector | + # | | + # +------------------------------------------------------------------------------------------------------+ + #alternate: + +# +--------------------------------------------------------------------------------------------------------+ +# | | +# | MkDocs allows the usage of Markdown extensions which can do various things. | +# | | +# | Material includes the pymdownx extension which provides a lot of useful features to use. | +# | | +# | Note that some extensions may use specific settings that you need to set. | +# | Please check out the official documentation of PyMdownx for more information: | +# | https://facelessuser.github.io/pymdown-extensions/ | +# | | +# | Material already provides required CSS and JS values for the PyMdownX Extensions, which means you do | +# | not need to set them up yourself. | +# | | +# | Read More: | +# | - https://www.mkdocs.org/user-guide/configuration/#markdown_extensions | +# | | +# +--------------------------------------------------------------------------------------------------------+ +markdown_extensions: + - markdown.extensions.admonition: + - markdown.extensions.codehilite: + guess_lang: false + - markdown.extensions.toc: + permalink: true + - pymdownx.arithmatex: + generic: true + - attr_list + - md_in_html + - pymdownx.blocks.caption + - admonition + - pymdownx.highlight: + anchor_linenums: true + - pymdownx.superfences + - pymdownx.tabbed: + alternate_style: true + - pymdownx.details + - attr_list + - tables + + #- pymdownx.b64: + #- pymdownx.betterem: + #- pymdownx.caret: + #- pymdownx.critic: + #- pymdownx.details: + #- pymdownx.emoji: + #- pymdownx.escapeall: + #- pymdownx.extra: + #- pymdownx.extrarawhtml: + #- pymdownx.highlight: + #- pymdownx.inlinehilite: + #- pymdownx.keys: + #- pymdownx.magiclink: + #- pymdownx.mark: + #- pymdownx.pathconverter: + #- pymdownx.progressbar: + #- pymdownx.smartsymbols: + #- pymdownx.snippets: + #- pymdownx.striphtml: + #- pymdownx.superfences: + #- pymdownx.tabbed: + #- pymdownx.tasklist: + #- pymdownx.tilde: + # - exporter: + # formats: + # pdf: + # enabled: !ENV [MKDOCS_EXPORTER_PDF, true] + # concurrency: 8 + # stylesheets: + # - resources/stylesheets/pdf.scss + # covers: + # front: resources/templates/covers/front.html.j2 + # back: resources/templates/covers/back.html.j2 + # aggregator: + # enabled: true + # output: .well-known/site.pdf + # covers: all + +# theme: +# name: material +# palette: +# - scheme: default +# primary: indigo +# accent: blue +# toggle: +# icon: material/brightness-7 +# name: Switch to dark mode +# - scheme: slate +# primary: indigo +# accent: blue +# toggle: +# icon: material/brightness-4 +# name: Switch to light mode +# features: +# - navigation.tabs +# - navigation.sections +# - navigation.top +# - content.code.copy +# - content.tabs.link + +# plugins: +# - search + +# markdown_extensions: + +