docs: add agent skill guides and update CMake build instructions

.agents/rules/micromamba_build.md

@@ -1,6 +1,10 @@
-# Skill: Build uLib with Micromamba
+---
+trigger: always_on
+---
 
-This skill provides instructions for building the uLib project using the micromamba environment.
+# Rule: Build uLib with Micromamba
+
+This rule provides instructions for building the uLib project using the micromamba environment.
 
 ## Context
 - **Environment**: micromamba `uLib`
@@ -14,26 +18,27 @@ This skill provides instructions for building the uLib project using the microma
    ```bash
    export MAMBA_EXE="/home/share/micromamba/bin/micromamba"
    export MAMBA_ROOT_PREFIX="/home/share/micromamba"
-   eval "$(/home/share/micromamba/bin/micromamba shell hook --shell bash)"
+   export PRESET="clang-make"
+   eval "$(${MAMBA_EXE} shell hook --shell bash)"
    micromamba activate uLib
    ```
 
 2. **Full Rebuild (if needed)**:
    If the `build` directory does not exist or a full reconfiguration is required:
    ```bash
-   conan profile detect --force
-   conan install . --output-folder=build --build=missing
-   cmake --preset conan-release
+   conan install . --output-folder=build/${PRESET} --build=missing --profile=fast
+   cmake --preset ${PRESET}
+   cmake --build build/${PRESET} -j$(nproc)
    ```
 
 3. **Incremental Build**:
    Run the build command from the root directory, pointing to the `build` folder and using all cores.
    ```bash
-   cmake --build build -j$(nproc)
+   cmake --build build/${PRESET} -j$(nproc)
    ```
 
-4. **Specific Target Build**:
+4. **Specific Target Build - gcompose**:
    To build a specific target (e.g., gcompose):
    ```bash
-   cmake --build build --target gcompose -j$(nproc)
-   ```
+   cmake --build build/${PRESET} --target gcompose -j$(nproc)
+   ```

.agents/skills/core_system.md

@@ -0,0 +1,49 @@
+# Skill: Core Object & Property System
+
+This skill defines the patterns for implementing and working with the `uLib` core object model.
+
+## Context
+- **Base Class**: `uLib::Object`
+- **Property System**: `uLib::Property<T>`
+- **Registration**: All objects must register their properties for UI visibility and serialization.
+
+## Implementation Patterns
+
+### 1. Defining an Object
+Inherit from `uLib::Object` and use the `ULIB_PROPERTY` macro for members.
+```cpp
+class MyObject : public uLib::Object {
+public:
+    ULIB_PROPERTY(double, Speed, 0.0)
+    ULIB_PROPERTY(std::string, Description, "None")
+    
+    MyObject() {
+        // Required for property visibility in PropertyEditor
+        ULIB_ACTIVATE_PROPERTIES(*this)
+    }
+};
+```
+
+### 2. Property Access
+Properties can be treated like their underlying types or accessed via `.Get()`/`.Set()`.
+```cpp
+obj.Speed = 10.5;                // Triggers Updated() signal
+double s = obj.Speed;            // Implicit conversion
+obj.Speed.SetRange(0.0, 100.0);  // Setting metadata
+```
+
+### 3. Serialization
+Implement `serialize` overloads for different archive types. Use `hrp` (Human Readable Property) to name fields.
+```cpp
+template <class ArchiveT>
+void serialize(ArchiveT &ar, const unsigned int version) {
+    ar & boost::serialization::make_nvp("InstanceName", this->GetInstanceName());
+    ar & boost::serialization::make_hrp("Speed", Speed, "m/s");
+}
+```
+
+## Checklist
+- [ ] Inherit from `uLib::Object`.
+- [ ] Use `ULIB_PROPERTY` for members that should appear in the GUI.
+- [ ] Call `ULIB_ACTIVATE_PROPERTIES` in the constructor.
+- [ ] Implement `serialize` if persistence is required.

.agents/skills/geant_simulation.md

@@ -0,0 +1,39 @@
+# Skill: HEP/Geant Simulation Rules
+
+This skill provides instructions for developing the Geant4 simulation components within `uLib`.
+
+## Context
+- **Domain Objects**: `Material`, `Solid`, `LogicalVolume`, `PhysicalVolume`.
+- **Integration**: `mutomGeant` library wraps Geant4 classes into `uLib::Object`s.
+
+## Patterns
+
+### 1. Adding a New Solid
+New solids must implement `GetPolyhedron()` to support VTK visualization.
+```cpp
+G4Polyhedron* MySolid::GetPolyhedron() const {
+    // Return the tessellated representation of the Geant4 solid
+    return m_G4Solid->GetPolyhedron();
+}
+```
+
+### 2. Physical Volume Hierarchy
+Maintain the relationship between `PhysicalVolume` and its parent `LogicalVolume`.
+```cpp
+auto* world = new LogicalVolume(worldSolid, worldMat);
+auto* detector = new PhysicalVolume(detectorLogic, world, "Detector1");
+detector->SetPosition({0, 0, 100}); // Relative to parent
+```
+
+### 3. Transformation Synchronization
+Use the centralized `TRS` object to manage position and rotation. Synchronization with Geant4's internal stores should be reactive.
+- Listen to `Object::Updated` on the `Solid` or `PhysicalVolume`.
+- Update the underlying `G4VPhysicalVolume` position/rotation.
+
+## Material Management
+Use the `Matter` class to manage Geant4 materials. Ensure materials are registered in the `G4NistManager` or custom material store if needed.
+
+## Checklist
+- [ ] Does the solid implement `GetPolyhedron()`?
+- [ ] Are parents correctly assigned in `PhysicalVolume` constructors?
+- [ ] Is the `TRS` object used for all spatial transformations?

.agents/skills/memory_management.md

@@ -0,0 +1,40 @@
+# Skill: Memory Management & Object Lifecycle
+
+This skill provides guidelines for managing memory safely within the `uLib` framework to prevent memory corruption and leaks.
+
+## Context
+- **Ownership**: `ObjectsContext` typically owns its children.
+- **Shared Access**: Use `SmartPointer<T>` for objects shared across multiple systems (e.g., Geant4 and VTK).
+- **Core Principle**: Avoid manual `delete` on objects managed by the framework.
+
+## Patterns
+
+### 1. Context Ownership
+When an object is added to an `ObjectsContext`, it is managed by that context.
+```cpp
+auto* context = new ObjectsContext();
+auto* obj = new MyObject();
+context->AddObject(obj); 
+// Do NOT delete obj; it will be deleted when context is destroyed.
+```
+
+### 2. Smart Pointers
+Use `SmartPointer<T>` for resources like `Material` or `Solid` that are used by both domain logic and external engines (Geant4).
+```cpp
+uLib::SmartPointer<Material> mat = new Material("Lead");
+solid->SetMaterial(mat); // Shared ownership
+```
+
+### 3. Geant4 Object Safety
+Geant4 often takes ownership of certain objects (like `G4VPhysicalVolume`). When wrapping these:
+- Ensure the wrapper doesn't double-free the Geant4-owned pointer.
+- Use `recursion_guard` if synchronizing transformations between `uLib::Object` and Geant4 volumes to prevent signal loops.
+
+## Debugging Memory Issues
+- **SIGABRT (invalid pointer)**: Usually caused by deleting an object that was already managed (and deleted) by an `ObjectsContext` or `SmartPointer`.
+- **Leaks**: Check if objects were created but never added to a context or wrapped in a `SmartPointer`.
+
+## Checklist
+- [ ] Are objects added to an `ObjectsContext`?
+- [ ] Is `SmartPointer` used for shared resources?
+- [ ] Is there a risk of double-freeing Geant4-managed pointers?

.agents/skills/signal_bridge.md

@@ -0,0 +1,34 @@
+# Skill: Multi-System Signaling (uLib ↔ Qt)
+
+This skill manages the coexistence of `uLib::Object` signals and Qt's `Q_OBJECT` signaling system.
+
+## Context
+- **uLib Signals**: Used for domain logic and data changes (`uLib::Object::connect`).
+- **Qt Signals**: Used for UI events, widgets, and application-level control flow (`QObject::connect`).
+
+## Patterns
+
+### 1. Bridging Logic
+When a domain change needs to trigger a UI update, use a wrapper or a direct connection if the widget has access to the `uLib::Object`.
+```cpp
+// In a Qt Widget
+uLib::Object::connect(domainObj, &Object::Updated, [this]() {
+    this->update(); // Trigger Qt repaint
+});
+```
+
+### 2. Selection Flow
+Selection usually starts in the VTK Viewport (Qt) and flows to the domain context.
+1. `QViewport` emits `prop3dSelected(Prop3D*)` (Qt signal).
+2. `MainPanel` catches it and calls `contextPanel->selectObject(p->GetContent())`.
+3. `ContextPanel` updates the tree view and property editors.
+
+### 3. Connection Hygiene
+- Use `uLib::Object::connect` for everything involving `uLib::Property` changes.
+- Use Qt `connect` for button clicks, menu actions, and window events.
+- Be careful with lambda captures; ensure the captured object is still alive or use weak pointers if necessary.
+
+## Checklist
+- [ ] Is the correct signaling system being used for the task?
+- [ ] Are capture groups in lambdas safe?
+- [ ] Does selection flow correctly between the 3D view and the tree view?

.agents/skills/testing_guide.md

@@ -0,0 +1,34 @@
+# Skill: Standardized Testing & Validation
+
+This skill provides the standard workflow for testing and validating changes in the `uLib` project.
+
+## Context
+- **Tooling**: `ctest` and direct execution of test binaries in the `build/` directory.
+- **Location**: Test binaries are typically located in `build/src/*/testing/` or `build/Testing/`.
+
+## Workflow
+
+### 1. Running All Tests
+From the root directory:
+```bash
+ctest --test-dir build/clang-make --output-on-failure
+```
+
+### 2. Running Component Tests
+Run specific categories of tests:
+- **Core**: `./build/clang-make/src/Core/testing/CoreTest`
+- **Math**: `./build/clang-make/src/Math/testing/MathVectorTest`
+- **Geant**: `./build/clang-make/src/HEP/Geant/testing/GeantApp`
+- **VTK**: `./build/clang-make/src/Vtk/testing/vtkViewerTest`
+
+### 3. Debugging a Failing Test
+Run the binary directly through `gdb` or `valgrind` (if available):
+```bash
+gdb --args ./build/clang-make/src/Core/testing/ObjectWrapperTest
+```
+
+## Validation Checklist for New Features
+- [ ] Does `ctest` pass globally?
+- [ ] If changing visualization, does `vtkViewerTest` show the correct results?
+- [ ] If changing Geant logic, does `GeantApp` run without memory aborts?
+- [ ] Are new tests added to the appropriate `CMakeLists.txt`?

.agents/skills/vtk_visualization.md

@@ -0,0 +1,52 @@
+# Skill: VTK Visualization Pipeline
+
+This skill defines how to bridge domain objects with the VTK 3D visualization layer.
+
+## Context
+- **Wrapper**: `Prop3D` (wraps a `vtkProp`).
+- **Mapping**: `Viewport` maintains `m_ObjectToProp3D` for synchronization.
+- **GUI Integration**: `QViewport` handles Qt events and selection signals.
+
+## Implementation Patterns
+
+### 1. Creating a Prop3D
+A `Prop3D` should wrap a domain object and update its visual state when the object changes.
+```cpp
+class MyProp3D : public Prop3D {
+public:
+    MyProp3D(MyObject* obj) : Prop3D(obj) {
+        // Connect domain updates to visual refreshes
+        uLib::Object::connect(obj, &Object::Updated, [this]() { this->SyncFromObject(); });
+        
+        // Expose properties to the VTK side-panel
+        ULIB_ACTIVATE_DISPLAY_PROPERTIES(*this)
+    }
+    
+    void SyncFromObject() {
+        // Update VTK actors/mappers from MyObject's properties
+    }
+};
+```
+
+### 2. Display Properties
+Use `serialize_display` to choose which properties of the domain object or the `Prop3D` itself are visible in the sliding "Display Properties" panel in `gcompose`.
+```cpp
+void serialize_display(Archive::display_properties_archive &ar) {
+    ar & boost::serialization::make_hrp("Opacity", m_Opacity);
+    ar & boost::serialization::make_hrp("Wireframe", m_Wireframe);
+}
+```
+
+### 3. Transformation Sync (TRS)
+Always synchronize the object's `trs` (Translate, Rotate, Scale) with the VTK actor's user transform.
+```cpp
+void UpdateTransform() {
+    auto matrix = GetContent()->GetTransform().GetMatrix();
+    m_Actor->SetUserMatrix(uLib::ToVtkMatrix(matrix));
+}
+```
+
+## Checklist
+- [ ] Does the `Prop3D` connect to the object's `Updated()` signal?
+- [ ] Are `ULIB_ACTIVATE_DISPLAY_PROPERTIES` and `serialize_display` implemented?
+- [ ] Is the transformation (TRS) correctly mapped to the VTK actor?

CMakePresets.json

@@ -2,22 +2,22 @@
     "version": 8,
     "configurePresets": [
         {
-            "name": "andrea",
+            "name": "gcc-make",
             "displayName": "Custom configure preset",
-            "description": "Sets Ninja generator, build and install directory",
-            "generator": "Ninja",
-            "binaryDir": "${sourceDir}/out/build/${presetName}",
+            "description": "Sets Makefile generator, build and install directory",
+            "generator": "Unix Makefiles",
+            "binaryDir": "${sourceDir}/build/${presetName}",
             "cacheVariables": {
                 "CMAKE_BUILD_TYPE": "Debug",
                 "CMAKE_INSTALL_PREFIX": "${sourceDir}/out/install/${presetName}"
             }
         },
         {
-            "name": "fast",
-            "displayName": "Fast build: Ninja + clang + ccache",
+            "name": "clang-ninja",
+            "displayName": "Ninja + clang + ccache",
             "description": "Uses Ninja generator, clang/lld compiler, and ccache",
             "generator": "Ninja",
-            "binaryDir": "${sourceDir}/build",
+            "binaryDir": "${sourceDir}/build/${presetName}",
             "cacheVariables": {
                 "CMAKE_BUILD_TYPE": "Release",
                 "CMAKE_C_COMPILER": "clang",
@@ -29,10 +29,37 @@
             }
         },
         {
-            "name": "mutom",
-            "description": "",
-            "displayName": "",
-            "inherits": []
+            "name": "clang-make",
+            "displayName": "Makefile + clang + ccache",
+            "description": "Uses Makefile generator, clang/lld compiler, and ccache",
+            "generator": "Unix Makefiles",
+            "binaryDir": "${sourceDir}/build/${presetName}",
+            "cacheVariables": {
+                "CMAKE_BUILD_TYPE": "Release",
+                "CMAKE_C_COMPILER": "clang",
+                "CMAKE_CXX_COMPILER": "clang++",
+                "CMAKE_EXE_LINKER_FLAGS": "-fuse-ld=lld",
+                "CMAKE_SHARED_LINKER_FLAGS": "-fuse-ld=lld",
+                "CMAKE_CXX_COMPILER_LAUNCHER": "ccache",
+                "CMAKE_C_COMPILER_LAUNCHER": "ccache"
+            }
+        },
+        {
+            "name": "cuda",
+            "displayName": "Makefile + clang + ccache",
+            "description": "Uses Makefile generator, clang/lld compiler, and ccache",
+            "generator": "Unix Makefiles",
+            "binaryDir": "${sourceDir}/build/${presetName}",
+            "cacheVariables": {
+                "CMAKE_BUILD_TYPE": "Release",
+                "CMAKE_C_COMPILER": "clang",
+                "CMAKE_CXX_COMPILER": "clang++",
+                "CMAKE_EXE_LINKER_FLAGS": "-fuse-ld=lld",
+                "CMAKE_SHARED_LINKER_FLAGS": "-fuse-ld=lld",
+                "CMAKE_CXX_COMPILER_LAUNCHER": "ccache",
+                "CMAKE_C_COMPILER_LAUNCHER": "ccache",
+                "USE_CUDA": "ON"
+            }
         }
     ]
 }

README.md

@@ -88,11 +88,9 @@ micromamba install -n uLib -y clang clangxx lld -c conda-forge
 Then build using the `fast` profile:
 
 ```bash
-conan install . --output-folder=build --build=missing --profile=fast
-cmake -B build -G Ninja \
-      -DCMAKE_TOOLCHAIN_FILE=build/conan_toolchain.cmake \
-      -DCMAKE_BUILD_TYPE=Release
-cmake --build build -j$(nproc)
+conan install . --output-folder=build/clang-ninja --build=missing --profile=fast
+cmake --preset clang-ninja
+cmake --build build/clang-ninja -j$(nproc)
 ```
 
 The `fast` profile is defined at `~/.conan2/profiles/fast` and sets:

cmake_output.log

@@ -0,0 +1,217 @@
+-- Using Conan toolchain: /home/rigoni/devel/cmt/uLib/build/clang-make/conan_toolchain.cmake
+-- Conan toolchain: Defining architecture flag: -m64
+-- Conan toolchain: Defining libcxx as C++ flags: -stdlib=libstdc++
+-- Conan toolchain: C++ Standard 17 with extensions ON
+-- The C compiler identification is Clang 21.1.0
+-- The CXX compiler identification is Clang 21.1.0
+-- Detecting C compiler ABI info
+-- Detecting C compiler ABI info - done
+-- Check for working C compiler: /home/share/micromamba/envs/uLib/bin/clang - skipped
+-- Detecting C compile features
+-- Detecting C compile features - done
+-- Detecting CXX compiler ABI info
+-- Detecting CXX compiler ABI info - done
+-- Check for working CXX compiler: /home/share/micromamba/envs/uLib/bin/clang++ - skipped
+-- Detecting CXX compile features
+-- Detecting CXX compile features - done
+-- Project name = uLib
+-- Package name = mutom-0.7
+-- Package version = 0.7
+-- Module path = /home/rigoni/devel/cmt/uLib/CMake;/home/rigoni/devel/cmt/uLib/build/clang-make
+-- CMAKE_PREFIX_PATH is /home/rigoni/devel/cmt/uLib/build/clang-make
+-- Conan: Component target declared 'hdf5::hdf5'
+-- Conan: Component target declared 'hdf5::hdf5_cpp'
+-- Conan: Component target declared 'hdf5::hdf5_hl'
+-- Conan: Component target declared 'hdf5::hdf5_hl_cpp'
+-- Conan: Target declared 'HDF5::HDF5'
+-- Conan: Target declared 'ZLIB::ZLIB'
+-- Conan: Including build module from '/home/rigoni/.conan2/p/b/hdf509daaae89dd98/p/lib/cmake/conan-official-hdf5-variables.cmake'
+-- Conan: Component target declared 'Boost::diagnostic_definitions'
+-- Conan: Component target declared 'Boost::disable_autolinking'
+-- Conan: Component target declared 'Boost::dynamic_linking'
+-- Conan: Component target declared 'Boost::headers'
+-- Conan: Component target declared 'Boost::boost'
+-- Conan: Component target declared 'boost::_libboost'
+-- Conan: Component target declared 'Boost::atomic'
+-- Conan: Component target declared 'Boost::charconv'
+-- Conan: Component target declared 'Boost::container'
+-- Conan: Component target declared 'Boost::context'
+-- Conan: Component target declared 'Boost::date_time'
+-- Conan: Component target declared 'Boost::exception'
+-- Conan: Component target declared 'Boost::math'
+-- Conan: Component target declared 'Boost::program_options'
+-- Conan: Component target declared 'Boost::regex'
+-- Conan: Component target declared 'Boost::serialization'
+-- Conan: Component target declared 'Boost::stacktrace'
+-- Conan: Component target declared 'Boost::system'
+-- Conan: Component target declared 'Boost::timer'
+-- Conan: Component target declared 'Boost::chrono'
+-- Conan: Component target declared 'Boost::coroutine'
+-- Conan: Component target declared 'Boost::filesystem'
+-- Conan: Component target declared 'Boost::json'
+-- Conan: Component target declared 'Boost::math_c99'
+-- Conan: Component target declared 'Boost::math_c99f'
+-- Conan: Component target declared 'Boost::math_c99l'
+-- Conan: Component target declared 'Boost::math_tr1'
+-- Conan: Component target declared 'Boost::math_tr1f'
+-- Conan: Component target declared 'Boost::math_tr1l'
+-- Conan: Component target declared 'Boost::random'
+-- Conan: Component target declared 'Boost::stacktrace_addr2line'
+-- Conan: Component target declared 'Boost::stacktrace_backtrace'
+-- Conan: Component target declared 'Boost::stacktrace_basic'
+-- Conan: Component target declared 'Boost::stacktrace_from_exception'
+-- Conan: Component target declared 'Boost::stacktrace_noop'
+-- Conan: Component target declared 'Boost::test'
+-- Conan: Component target declared 'Boost::url'
+-- Conan: Component target declared 'Boost::wserialization'
+-- Conan: Component target declared 'Boost::fiber'
+-- Conan: Component target declared 'Boost::graph'
+-- Conan: Component target declared 'Boost::iostreams'
+-- Conan: Component target declared 'Boost::nowide'
+-- Conan: Component target declared 'Boost::prg_exec_monitor'
+-- Conan: Component target declared 'Boost::process'
+-- Conan: Component target declared 'Boost::test_exec_monitor'
+-- Conan: Component target declared 'Boost::thread'
+-- Conan: Component target declared 'Boost::wave'
+-- Conan: Component target declared 'Boost::contract'
+-- Conan: Component target declared 'Boost::fiber_numa'
+-- Conan: Component target declared 'Boost::locale'
+-- Conan: Component target declared 'Boost::log'
+-- Conan: Component target declared 'Boost::type_erasure'
+-- Conan: Component target declared 'Boost::unit_test_framework'
+-- Conan: Component target declared 'Boost::log_setup'
+-- Conan: Target declared 'boost::boost'
+-- Conan: Target declared 'BZip2::BZip2'
+-- Conan: Including build module from '/home/rigoni/.conan2/p/b/bzip2b5764e08a4f7d/p/lib/cmake/conan-official-bzip2-variables.cmake'
+-- Conan: Target declared 'libbacktrace::libbacktrace'
+-- Found OpenMP_C: -fopenmp=libomp (found version "5.1")
+-- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1")
+-- Found OpenMP: TRUE (found version "5.1")
+-- Found nlohmann_json: /home/share/micromamba/envs/uLib/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found suitable version "3.12.0", minimum required is "3.12.0")
+-- Found Vdt: /home/share/micromamba/envs/uLib/include (found version "0.4")
+-- Warning: Standard CMAKE_CXX_STANDARD value defined in conan_toolchain.cmake to 17 has been modified to 20 by /home/share/micromamba/envs/uLib/cmake/ROOTUseFile.cmake
+-- Found Python3: /home/share/micromamba/envs/uLib/bin/python3.12 (found suitable version "3.12.13", minimum required is "3.12") found components: Interpreter Development.Module Development.Embed
+-- Found nlohmann_json: /home/share/micromamba/envs/uLib/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.12.0")
+-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
+-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
+-- Found Threads: TRUE
+-- Performing Test HAVE_STDATOMIC
+-- Performing Test HAVE_STDATOMIC - Success
+-- Found WrapAtomic: TRUE
+-- Found OpenGL: /home/share/micromamba/envs/uLib/lib/libOpenGL.so
+-- Found WrapOpenGL: TRUE
+-- Could NOT find WrapVulkanHeaders (missing: Vulkan_INCLUDE_DIR) 
+-- Found X11: /home/share/micromamba/envs/uLib/include
+-- Looking for XOpenDisplay in /home/share/micromamba/envs/uLib/lib/libX11.so;/home/share/micromamba/envs/uLib/lib/libXext.so
+-- Looking for XOpenDisplay in /home/share/micromamba/envs/uLib/lib/libX11.so;/home/share/micromamba/envs/uLib/lib/libXext.so - found
+-- Looking for gethostbyname
+-- Looking for gethostbyname - found
+-- Looking for connect
+-- Looking for connect - found
+-- Looking for remove
+-- Looking for remove - found
+-- Looking for shmat
+-- Looking for shmat - found
+-- Looking for IceConnectionNumber in ICE
+-- Looking for IceConnectionNumber in ICE - found
+-- Performing Test Iconv_IS_BUILT_IN
+-- Performing Test Iconv_IS_BUILT_IN - Failed
+-- Found Iconv: /home/share/micromamba/envs/uLib/lib/libiconv.so (found version "1.18")
+-- Found ICU: /home/share/micromamba/envs/uLib/include (found version "75.1") found components: data i18n uc
+-- Looking for lzma_auto_decoder in /home/share/micromamba/envs/uLib/lib/liblzma.so
+-- Looking for lzma_auto_decoder in /home/share/micromamba/envs/uLib/lib/liblzma.so - found
+-- Looking for lzma_easy_encoder in /home/share/micromamba/envs/uLib/lib/liblzma.so
+-- Looking for lzma_easy_encoder in /home/share/micromamba/envs/uLib/lib/liblzma.so - found
+-- Looking for lzma_lzma_preset in /home/share/micromamba/envs/uLib/lib/liblzma.so
+-- Looking for lzma_lzma_preset in /home/share/micromamba/envs/uLib/lib/liblzma.so - found
+-- Found LibLZMA: /home/share/micromamba/envs/uLib/lib/liblzma.so (found version "5.8.2")
+-- Conan: Including build module from '/home/rigoni/.conan2/p/b/hdf509daaae89dd98/p/lib/cmake/conan-official-hdf5-variables.cmake'
+-- Found utf8cpp: /home/share/micromamba/envs/uLib/include
+-- Found THEORA: /home/share/micromamba/envs/uLib/lib/libtheora.so
+-- Found OGG: /home/share/micromamba/envs/uLib/lib/libogg.so
+-- Found NetCDF: /home/share/micromamba/envs/uLib/include (found version "4.9.2")
+-- Found JsonCpp: /home/share/micromamba/envs/uLib/lib/libjsoncpp.so (found suitable version "1.9.6", minimum required is "0.7.0")
+-- Found PNG: /home/share/micromamba/envs/uLib/lib/libpng.so (found version "1.6.56")
+-- Found GL2PS: /home/share/micromamba/envs/uLib/lib/libgl2ps.so (found suitable version "1.4.2", minimum required is "1.4.2")
+-- Found LibPROJ: /home/share/micromamba/envs/uLib/lib/libproj.so (found version "9.6.2")
+-- Found SQLite3: /home/share/micromamba/envs/uLib/lib/libsqlite3.so (found version "3.52.0")
+-- Could NOT find WrapVulkanHeaders (missing: Vulkan_INCLUDE_DIR) 
+-- Found LZ4: /home/share/micromamba/envs/uLib/lib/liblz4.so (found version "1.10.0")
+-- Found LZMA: /home/share/micromamba/envs/uLib/lib/liblzma.so (found version "5.8.2")
+-- Found JPEG: /home/share/micromamba/envs/uLib/lib/libjpeg.so (found version "80")
+-- Found TIFF: /home/share/micromamba/envs/uLib/lib/libtiff.so (found version "4.7.1")
+-- Could NOT find freetype (missing: freetype_DIR)
+-- Found Freetype: /home/share/micromamba/envs/uLib/lib/libfreetype.so (found version "2.14.3")
+-- Performing Test HAS_FLTO_THIN
+-- Performing Test HAS_FLTO_THIN - Failed
+-- Performing Test HAS_FLTO_AUTO
+-- Performing Test HAS_FLTO_AUTO - Failed
+-- Performing Test HAS_FLTO
+-- Performing Test HAS_FLTO - Failed
+-- Found pybind11: /home/share/micromamba/envs/uLib/include (found version "3.0.3")
+-- Could NOT find freetype (missing: freetype_DIR)
+CMake Deprecation Warning at /home/share/micromamba/envs/uLib/lib/cmake/Geant4/PTL/PTLConfig.cmake:30 (cmake_minimum_required):
+  Compatibility with CMake < 3.10 will be removed from a future version of
+  CMake.
+
+  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
+  to tell CMake that the project requires at least <min> but has been updated
+  to work with policies introduced by <max> or earlier.
+Call Stack (most recent call first):
+  /home/share/micromamba/envs/uLib/share/cmake-4.2/Modules/CMakeFindDependencyMacro.cmake:93 (find_package)
+  /home/share/micromamba/envs/uLib/share/cmake-4.2/Modules/CMakeFindDependencyMacro.cmake:125 (__find_dependency_common)
+  /home/share/micromamba/envs/uLib/lib/cmake/Geant4/Geant4Config.cmake:286 (find_dependency)
+  CMakeLists.txt:194 (find_package)
+
+
+-- Found XercesC: /home/share/micromamba/envs/uLib/lib/libxerces-c.so (found suitable version "3.2.5", minimum required is "3.2.5")
+-- Found Freetype: /home/share/micromamba/envs/uLib/lib/libfreetype.so (found suitable version "2.14.3", minimum required is "2.12.1")
+-- Found Geant4: /home/share/micromamba/envs/uLib/lib/cmake/Geant4/Geant4Config.cmake (found version "11.2.2")
+-- Geant4 libs: Geant4::G4Tree;Geant4::G4FR;Geant4::G4GMocren;Geant4::G4visHepRep;Geant4::G4RayTracer;Geant4::G4VRML;Geant4::G4ToolsSG;Geant4::G4vis_management;Geant4::G4modeling;Geant4::G4interfaces;Geant4::G4mctruth;Geant4::G4geomtext;Geant4::G4gdml;Geant4::G4analysis;Geant4::G4error_propagation;Geant4::G4readout;Geant4::G4physicslists;Geant4::G4run;Geant4::G4event;Geant4::G4tracking;Geant4::G4parmodels;Geant4::G4processes;Geant4::G4digits_hits;Geant4::G4track;Geant4::G4particles;Geant4::G4geometry;Geant4::G4materials;Geant4::G4graphics_reps;Geant4::G4intercoms;Geant4::G4global;Geant4::G4tools;Geant4::G4ptl
+-- Looking for include file inittypes.h
+-- Looking for include file inittypes.h - not found
+-- Looking for include file stdbool.h
+-- Looking for include file stdbool.h - not found
+-- Looking for include file stdint.h
+-- Looking for include file stdint.h - not found
+-- Looking for include file stdlib.h
+-- Looking for include file stdlib.h - not found
+-- Looking for include file dlfcn.h
+-- Looking for include file dlfcn.h - not found
+-- Looking for include file malloc.h
+-- Looking for include file malloc.h - not found
+-- Looking for malloc
+-- Looking for malloc - not found
+-- Looking for include file memory.h
+-- Looking for include file memory.h - not found
+-- Looking for include file math.h
+-- Looking for include file math.h - not found
+-- Looking for fsetround
+-- Looking for fsetround - not found
+-- Looking for floor
+-- Looking for floor - not found
+-- Looking for pow
+-- Looking for pow - not found
+-- Looking for sqrt
+-- Looking for sqrt - not found
+-- Looking for strdup
+-- Looking for strdup - not found
+-- Looking for strstr
+-- Looking for strstr - not found
+-- Looking for include file strings.h
+-- Looking for include file strings.h - not found
+-- Looking for include file string.h
+-- Looking for include file string.h - not found
+-- Looking for include file sys/stat.h
+-- Looking for include file sys/stat.h - not found
+-- Looking for include file sys/types.h
+-- Looking for include file sys/types.h - not found
+-- Looking for include file unistd.h
+-- Looking for include file unistd.h - not found
+-- Looking for include file assert.h
+-- Looking for include file assert.h - not found
+-- Geant4 found: 11.2.2
+-- Found Python3: /home/share/micromamba/envs/uLib/bin/python3.12 (found version "3.12.13") found components: Interpreter
+-- Configuring done (9.2s)
+-- Generating done (1.6s)
+-- Build files have been written to: /home/rigoni/devel/cmt/uLib/build/clang-make

src/Vtk/HEP/Geant/testing/vtkSolidsTest.cpp

@@ -71,10 +71,8 @@ int main(int argc, char** argv) {
     vtkTess.SetColor(0.2, 0.8, 0.2); // Greenish tess
     
     // Position tessellated solid away from box using the PhysicalVolume
-    Matrix4f trans = Matrix4f::Identity();
-    trans.block<3,1>(0,3) = Vector3f(5_m, 0, 0);
-    pvTess->SetMatrix(trans);
-    vtkTess.Update();
+    pvTess->SetPosition(Vector3f(5_m, 0, 0));
+    pvTess->Updated();
 
     std::cout << "..:: Testing vtkSolidsTest ::.." << std::endl;
     std::cout << "Box and Tessellated solids (placed via PhysicalVolumes) initialized." << std::endl;

src/Vtk/Math/testing/vtkContainerBoxTest2.cpp

@@ -15,7 +15,7 @@ using namespace uLib;
 
 int main() {
     std::cout << "Creating ContainerBox..." << std::endl;
-    ContainerBox* box = new ContainerBox(Vector3f(1.0, 1.0, 1.0)); // 1x1x1 unit box
+    ContainerBox* box = new ContainerBox(Vector3f(1.0_m , 0.5_m, 1.0_m)); // 1x1x1 unit box
     box->SetInstanceName("MyTestBox");
 
     std::cout << "Creating VTK representation..." << std::endl;

src/Vtk/Math/vtkContainerBox.cpp

@@ -65,6 +65,7 @@ ContainerBox::ContainerBox(ContainerBox::Content *content)
   this->InstallPipe();
   d->m_UpdateSignal = Object::connect(
       this->m_model.get(), &uLib::Object::Updated, this, &ContainerBox::Update);
+      this->Update();
 }
 
 ContainerBox::~ContainerBox() { delete d; }
@@ -81,13 +82,18 @@ void ContainerBox::Update() {
 
   vtkProp3D *prop = vtkProp3D::SafeDownCast(this->GetProp());
   if (prop) {
-    // Apply the full volume matrix (TRS * m_LocalT)
+    // Apply the TRS matrix to the assembly
     vtkNew<vtkMatrix4x4> m;
     Matrix4fToVtk(this->m_model->GetMatrix(), m);
     prop->SetUserMatrix(m);
     prop->Modified();
   }
 
+  // Apply the local shape transformation (Size/Origin) to the cube actor
+  vtkNew<vtkMatrix4x4> localM;
+  Matrix4fToVtk(this->m_model->GetLocalMatrix(), localM);
+  d->m_Cube->SetUserMatrix(localM);
+
   // Delegate rest of update (appearance, render, etc)
   ConnectionBlock blocker(d->m_UpdateSignal);
   this->Prop3D::Update();
@@ -121,11 +127,11 @@ void ContainerBox::InstallPipe() {
   Content *c = this->m_model;
 
   // CUBE
+
+  vtkSmartPointer<vtkPolyDataMapper> mapper = vtkSmartPointer<vtkPolyDataMapper>::New();
   vtkSmartPointer<vtkCubeSource> cube = vtkSmartPointer<vtkCubeSource>::New();
 
-  vtkSmartPointer<vtkPolyDataMapper> mapper =
-      vtkSmartPointer<vtkPolyDataMapper>::New();
-  cube->SetBounds(0, 1, 0, 1, 0, 1);
+  // cube->SetBounds(-0.5, 0.5, -0.5, 0.5, -0.5, 0.5);
   mapper->SetInputConnection(cube->GetOutputPort());
   mapper->Update();
   d->m_Cube->SetMapper(mapper);