Error handling

CMake/cmt-ulib.spec.in

@@ -1,116 +0,0 @@
-Summary: Cosmic Muon Tomography core libraries
-Name: cmt-ulib
-Version: @PKGVERSION@
-Release: @PKGRELEASE@%{?dist}
-License: EUROPEAN UNION PUBLIC LICENCE v. 1.2
-Vendor: INFN
-URL: https://github.com/OpenCMT/uLib
-Group: Development/Libraries
-BuildArch: %{_arch}
-%if %{?rhel}%{!?rhel:0} >= 8
-BuildRequires: cmake
-%else
-BuildRequires: cmake3
-%endif
-BuildRequires: doxygen
-BuildRequires: boost-devel
-BuildRequires: eigen3-devel
-BuildRequires: vtk-devel
-BuildRequires: readline-devel
-BuildRequires: pcl-devel
-BuildRequires: root-geom
-BuildRequires: root-genvector
-BuildRequires: root-smatrix
-BuildRequires: root-montecarlo-eg
-BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
-AutoReqProv: yes
-Source: %{name}-%{version}.tar.gz
-
-%description
-This package contains the base toolkit library for Cosmic Muon Tomography reconstruction,
-analysis and imaging software Developed by University of Padova and INFN Sezione di Padova  Italy
-
-%global _ulibpkgname mutom
-%global _ulibcmakedir %{_libdir}/cmake/%{_ulibpkgname}
-
-%prep
-%setup -c
-rm -rf %{buildroot}
-mkdir -p %{buildroot}
-
-%build
-mkdir %{_builddir}/%{name}-%{version}/build
-cd %{_builddir}/%{name}-%{version}/build
-%cmake -DCMAKE_INSTALL_PREFIX=%{buildroot}%{_prefix} \
-       -DCMAKE_BUILD_TYPE=RelWithDebInfo \
-       -DPACKAGE_NAME=%{_ulibpkgname} \
-       -DPACKAGE_INSTALL_LIB_DIR=%{buildroot}%{_libdir} \
-       -DPACKAGE_INSTALL_INC_DIR=%{buildroot}%{_includedir}/%{_ulibpkgname} \
-       -DPACKAGE_INSTALL_CMAKE_DIR=%{buildroot}%{_ulibcmakedir} \
-       -DNODOXYGEN=ON \
-       %{_builddir}/%{name}-%{version}
-make %{?_smp_mflags}
-
-%install
-cd %{_builddir}/%{name}-%{version}/build
-make install
-sed -i 's|%{buildroot}/usr|%{_prefix}|g' %{buildroot}%{_ulibcmakedir}/uLibTargets.cmake
-sed -i 's|%{buildroot}/usr|%{_prefix}|g' %{buildroot}%{_ulibcmakedir}/uLibTargets-relwithdebinfo.cmake
-
-%clean
-rm -rf %{buildroot}
-
-%files
-%defattr(-,root,root)
-%{_libdir}/libmutom*.so.0.2
-%{_libdir}/uLibRootDict_rdict.pcm
-
-%package devel
-Summary: Cosmic Muon Tomography core libraries, development files
-Requires: %{name}
-Requires: boost-devel
-Requires: eigen3-devel
-Requires: vtk-devel
-Requires: readline-devel
-Requires: pcl-devel
-Requires: root-geom
-Requires: root-genvector
-Requires: root-smatrix
-Requires: root-montecarlo-eg
-
-
-%description devel
-This package contains the base toolkit library for Cosmic Muon Tomography reconstruction,
-analysis and imaging software Developed by University of Padova and INFN Sezione di Padova  Italy
-
-%files devel
-%defattr(-,root,root)
-%dir %{_ulibcmakedir}
-/usr/bin/uLib_config
-%{_libdir}/libmutom*.so
-%{_ulibcmakedir}/*.cmake
-%dir %{_includedir}/%{_ulibpkgname}
-%dir %{_includedir}/%{_ulibpkgname}/Core
-%dir %{_includedir}/%{_ulibpkgname}/Math
-%dir %{_includedir}/%{_ulibpkgname}/Root
-%dir %{_includedir}/%{_ulibpkgname}/Detectors
-%dir %{_includedir}/%{_ulibpkgname}/Vtk
-%{_includedir}/%{_ulibpkgname}/*.h
-%{_includedir}/%{_ulibpkgname}/Core/*.h
-%{_includedir}/%{_ulibpkgname}/Math/*.h
-%{_includedir}/%{_ulibpkgname}/Math/*.hpp
-%{_includedir}/%{_ulibpkgname}/Root/*.h
-%{_includedir}/%{_ulibpkgname}/Detectors/*.h
-%{_includedir}/%{_ulibpkgname}/Vtk/*.h
-
-
-
-
-
-
-
-
-%changelog
-* Tue Dec 04 2018 Paolo Andreetto <paolo.andreetto@pd.infn.it> - 0.2.1-1
-- Repackaging for CentOS 7
-

CMake/uLibFindDependencies.cmake

@@ -13,7 +13,7 @@ set(Boost_USE_STATIC_LIBS OFF)
 set(Boost_USE_MULTITHREADED ON)
 set(Boost_USE_STATIC_RUNTIME OFF)
 
-find_package(Boost 1.45.0 COMPONENTS serialization signals program_options REQUIRED)
+find_package(Boost 1.45.0 COMPONENTS program_options REQUIRED)
 if(Boost_FOUND)
  set(HAVE_BOOST true)
 endif(Boost_FOUND)

CMake/uLibGenerateRPMS.cmake

@@ -1,34 +0,0 @@
-# Target for RPMs creation
-
-set(PKGREL 1 CACHE STRING "Package build number")
-set(ITEMS_FOR_SOURCE AUTHORS
-                     CMakeConfig.in.h
-                     CMakePkgConfig.pc.in
-                     test.cpp
-                     uLibConfig.cmake.in
-                     uLib.creator
-                     ulib.h
-                     vtk_test.cpp
-                     CMake
-                     CMakeLists.txt
-                     Jenkinsfile
-                     src
-                     uLib.config
-                     uLibConfigVersion.cmake.in
-                     uLib.files
-                     uLib.includes)
-
-add_custom_target(rpm
-                  COMMAND mkdir -p ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/BUILD
-                                   ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/RPMS
-                                   ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SOURCES
-                                   ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SPECS
-                                   ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SRPMS
-                  COMMAND tar -zcf ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SOURCES/cmt-ulib-${PACKAGE_VERSION}.tar.gz ${ITEMS_FOR_SOURCE}
-                  COMMAND sed -e 's|@PKGVERSION@|${PACKAGE_VERSION}|g'
-                              -e 's|@PKGRELEASE@|${PKGREL}|g'
-                              CMake/cmt-ulib.spec.in > ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SPECS/cmt-ulib.spec
-                  COMMAND QA_SKIP_BUILD_ROOT=1 rpmbuild -ba --define '_topdir ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild'
-                          ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SPECS/cmt-ulib.spec
-                  WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
-

CMakeLists.txt

@@ -11,7 +11,7 @@ project(uLib)
 
 # The version number.
 set(PROJECT_VERSION_MAJOR 0)
-set(PROJECT_VERSION_MINOR 2)
+set(PROJECT_VERSION_MINOR 5)
 set(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}")
 set(PROJECT_SOVERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}")
 
@@ -26,130 +26,186 @@ set(PACKAGE_AUTHOR "Andrea Rigoni Garola <andrea.rigoni@pd.infn.it>")
 
 set(ULIB_CMAKE_DIR "${PROJECT_SOURCE_DIR}/CMake")
 set(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/CMake" ${CMAKE_MODULE_PATH})
-message(STATUS "Module path: ${CMAKE_MODULE_PATH}")
+message(STATUS "Project name = ${PROJECT_NAME}")
-
+message(STATUS "Package name = ${PACKAGE_NAME}")
-include(uLibMacros)
+message(STATUS "Package version = ${PACKAGE_VERSION}")
-include(uLibDebugMacro)
+message(STATUS "Module path = ${CMAKE_MODULE_PATH}")
-include(uLibTargetMacros)
-#include(uLibGenerateRMake)
-
 
 ## GLOBALS ------------------------------------------------------------------ ##
 
-include(uLibCommon)
+set(PACKAGE_INSTALL_BIN_DIR ${CMAKE_INSTALL_PREFIX}/bin 
-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ") ## Add flags here ##
+    CACHE PATH "Installation directory for executables")
+set(PACKAGE_INSTALL_LIB_DIR ${CMAKE_INSTALL_PREFIX}/lib/
+    CACHE PATH "Installation directory for libraries")
+set(PACKAGE_INSTALL_INC_DIR ${CMAKE_INSTALL_PREFIX}/include/${PACKAGE_NAME}
+    CACHE PATH "Installation directory for headers")
+set(PACKAGE_INSTALL_DATA_DIR ${CMAKE_INSTALL_PREFIX}/share/${PACKAGE_NAME}
+    CACHE PATH "Installation directory for data files")
+set(PACKAGE_INSTALL_CMAKE_DIR ${CMAKE_INSTALL_PREFIX}/lib/cmake/${PACKAGE_NAME}
+    CACHE PATH "Installation directory for CMake files")
 
-enable_testing()
+set(SRC_DIR ${PROJECT_SOURCE_DIR}/src)
+
+if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
+    message(STATUS "Setting build type to 'Release' as none was specified.")
+    set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING "Choose the type of build." FORCE)
+    set(CMAKE_EXE_LINKER_FLAGS "-Wl,--no-as-needed")
+    # Set the possible values of build type for cmake-gui
+    set_property(CACHE CMAKE_BUILD_TYPE PROPERTY 
+               STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
+endif()
+
+set(CMAKE_CXX_WARNING_OPTION "" 
+    CACHE STRING "Warning level -WAll to verbose all warnings")
+set(CMAKE_VERBOSE_MAKEFILE FALSE
+    CACHE STRING "Verbose compile output switch")
+
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++0x ${CMAKE_CXX_WARNING_OPTION}")
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -UULIB_SERIALIZATION_ON")
+
+#enable_testing()
 
 ## FIND PACKAGES ------------------------------------------------------------ ##
 
-include(uLibFindDependencies)
+set(Boost_USE_STATIC_LIBS OFF)
+set(Boost_USE_MULTITHREADED ON)
+set(Boost_USE_STATIC_RUNTIME OFF)
+find_package(Boost 1.45.0 COMPONENTS program_options REQUIRED)
+include_directories(${Boost_INCLUDE_DIRS})
 
+find_package(Eigen3 CONFIG REQUIRED)
+include(${EIGEN3_USE_FILE})
+
+find_package(ROOT CONFIG REQUIRED)
+include(${ROOT_USE_FILE})
+
+find_package(VTK REQUIRED
+                 COMPONENTS CommonColor
+                            CommonCore
+                            FiltersCore
+                            FiltersModeling
+                            FiltersSources
+                            IOLegacy
+                            IOXML
+                            IOXMLParser
+                            ImagingCore
+                            InteractionStyle
+                            InteractionWidgets
+                            RenderingAnnotation
+                            RenderingContextOpenGL2
+                            RenderingCore
+                            RenderingFreeType
+                            RenderingGL2PSOpenGL2
+                            RenderingOpenGL2
+                            RenderingVolumeOpenGL2)
+
+set(CMAKE_REQUIRED_INCLUDES CMAKE_REQUIRED_INCLUDES math.h)
+set(CMAKE_REQUIRED_LIBRARIES CMAKE_REQUIRED_LIBRARIES m)
 
 ## CONFIG ------------------------------------------------------------------- ##
 
-include(uLibConfigHeader)
+set(BOOST_PP_VARIADICS ON)
+
+include(CheckIncludeFiles)
+include(CheckFunctionExists)
+include(CheckSymbolExists)
+
+CHECK_INCLUDE_FILES(inittypes.h HAVE_INITTYPES_H)
+CHECK_INCLUDE_FILES(stdbool.h HAVE_STDBOOL_H)
+CHECK_INCLUDE_FILES(stdint.h HAVE_STDINT_H)
+CHECK_INCLUDE_FILES(stdlib.h HAVE_STDLIB_H)
+CHECK_INCLUDE_FILES(dlfcn.h HAVE_DLFCN_H)
+CHECK_INCLUDE_FILES(malloc.h HAVE_MALLOC_H)
+CHECK_FUNCTION_EXISTS(malloc HAVE_MALLOC)
+CHECK_INCLUDE_FILES(memory.h HAVE_MEMORY_H)
+CHECK_INCLUDE_FILES(math.h HAVE_MATH_H)
+CHECK_FUNCTION_EXISTS(fsetround HAVE_FSETROUND)
+CHECK_FUNCTION_EXISTS(floor HAVE_FLOOR)
+CHECK_FUNCTION_EXISTS(pow HAVE_POW)
+CHECK_FUNCTION_EXISTS(sqrt HAVE_SQRT)
+CHECK_FUNCTION_EXISTS(strdup HAVE_STRDUP)
+CHECK_FUNCTION_EXISTS(strstr HAVE_STRSTR)
+CHECK_INCLUDE_FILES(strings.h HAVE_STRINGS_H)
+CHECK_INCLUDE_FILES(string.h HAVE_STRING_H)
+CHECK_INCLUDE_FILES(sys/stat.h HAVE_SYS_STAT_H)
+CHECK_INCLUDE_FILES(sys/types.h HAVE_SYS_TYPES_H)
+CHECK_INCLUDE_FILES(unistd.h HAVE_UNISTD_H)
+CHECK_INCLUDE_FILES(assert.h HAVE_ASSERT_H)
+
+configure_file("${PROJECT_SOURCE_DIR}/CMakeConfig.in.h"
+               "${PROJECT_BINARY_DIR}/config.h")
+
+install(FILES "${PROJECT_BINARY_DIR}/config.h"
+        DESTINATION ${PACKAGE_INSTALL_INC_DIR})
 
 ## ADD LIBRARIES SUBDIRECTORIES --------------------------------------------- ##
 
-## select modules ##
+include_directories(${PROJECT_BINARY_DIR})
-set(ULIB_SELECTED_MODULES
+include_directories(${SRC_DIR})
-      Core
-      Math
-      Detectors
-      Root
-)
 
 ## uLib_add_shared_library puts names there
 set(ULIB_SHARED_LIBRARIES)
+## select modules ##
+set(ULIB_SELECTED_MODULES)
 
-if(ULIB_USE_VTK)
+include_directories(${SRC_DIR}/Core)
- LIST(APPEND ULIB_SELECTED_MODULES Vtk)
+add_subdirectory(${SRC_DIR}/Core)
-endif(ULIB_USE_VTK)
+
+include_directories(${SRC_DIR}/Math)
+add_subdirectory(${SRC_DIR}/Math)
+
+include_directories(${SRC_DIR}/Detectors)
+add_subdirectory(${SRC_DIR}/Detectors)
+
+include_directories(${SRC_DIR}/Root)
+add_subdirectory(${SRC_DIR}/Root)
+
+include_directories(${SRC_DIR}/Vtk)
+add_subdirectory(${SRC_DIR}/Vtk)
+
+#add_subdirectory("${SRC_DIR}/utils/make_recipe")
 
 ## Documentation and packages
 
-include(uLibGenerateRPMS)
+#include(uLibGenerateDoc)
-include(uLibGenerateDoc)
-
-## this gets ulib modules into a variable ##
-function(uLib_modules result)
- set(out)
- foreach(module ${ULIB_SELECTED_MODULES})
-  list(APPEND out ${PACKAGE_LIBPREFIX}${module})
- endforeach(module)
- set(${result} "${out}" PARENT_SCOPE)
-endfunction()
-
-
-## ENTERING MODULES SUBDIRECTORIES ##
-message("/////////// SELECTED MODULES //////////////")
-foreach(module ${ULIB_SELECTED_MODULES})
- message(STATUS "adding module: ${module}")
- set( uLib-module ${module})
- include_directories(${SRC_DIR}/${module})
- add_subdirectory(${SRC_DIR}/${module})
-endforeach(module)
 
 ## UTILITIES ##
-add_subdirectory("${SRC_DIR}/utils/make_recipe")
+#add_subdirectory("${SRC_DIR}/utils/make_recipe")
 
 
 ## INSTALLS AND EXPORTS ----------------------------------------------------- ##
 
-#export(PACKAGE uLib)
+#export(PACKAGE ULIB)
-export(PACKAGE ULIB)
+#export(TARGETS ${ULIB_SHARED_LIBRARIES} ${ULIB_EXPORTED_TARGETS}
-export(TARGETS ${ULIB_SHARED_LIBRARIES} ${ULIB_EXPORTED_TARGETS}
+#       FILE "${PROJECT_BINARY_DIR}/uLibTargets.cmake"    )
-       FILE "${PROJECT_BINARY_DIR}/uLibTargets.cmake"    )
-#export(TARGETS ${ULIB_EXPORTED_TARGETS}
-#       FILE "${PROJECT_BINARY_DIR}/uLibExeTargets.cmake" )
 
 
 # Create the FooBarConfig.cmake and FooBarConfigVersion files
 file(RELATIVE_PATH REL_INCLUDE_DIR "${PACKAGE_INSTALL_CMAKE_DIR}"
    "${PACKAGE_INSTALL_INC_DIR}")
+
 # ... for the build tree
-set(CONF_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/src" "${PROJECT_BINARY_DIR}")
+#set(CONF_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/src" "${PROJECT_BINARY_DIR}")
-configure_file(uLibConfig.cmake.in
+#configure_file(uLibConfig.cmake.in 
-  "${PROJECT_BINARY_DIR}/uLibConfig.cmake" @ONLY)
+#               "${PROJECT_BINARY_DIR}/uLibConfig.cmake" @ONLY)
+
 # ... for the install tree
 set(CONF_INCLUDE_DIRS "\${ULIB_CMAKE_DIR}/${REL_INCLUDE_DIR}")
 configure_file(uLibConfig.cmake.in
-  "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/uLibConfig.cmake" @ONLY)
+               "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/uLibConfig.cmake"
+               @ONLY)
+
 # ... for both
 configure_file(uLibConfigVersion.cmake.in
                "${PROJECT_BINARY_DIR}/uLibConfigVersion.cmake" @ONLY)
 
 install(FILES "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/uLibConfig.cmake"
               "${PROJECT_BINARY_DIR}/uLibConfigVersion.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/FindReadLine.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/FindROOT.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/FindROOTv6.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibCommon.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibConfigHeader.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibDebugMacro.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibFindDependencies.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibGenerateDoc.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibGenerateRMake.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibGenerateRPMS.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibMacros.cmake"
-              "${PROJECT_SOURCE_DIR}/CMake/uLibTargetMacros.cmake"
         DESTINATION "${PACKAGE_INSTALL_CMAKE_DIR}"
         COMPONENT dev)
 
 # Install the export set for use with the install-tree
-install(EXPORT "${PROJECT_NAME}Targets" DESTINATION
+install(EXPORT "${PROJECT_NAME}Targets"
-  "${PACKAGE_INSTALL_CMAKE_DIR}" COMPONENT dev)
+        DESTINATION "${PACKAGE_INSTALL_CMAKE_DIR}"
-
+        COMPONENT dev)
-install(FILES ${PROJECT_SOURCE_DIR}/ulib.h DESTINATION ${PACKAGE_INSTALL_INC_DIR})
-
-
-# TODO clean also subdirectories
-add_custom_target(clean-cmake-files
-   COMMAND ${CMAKE_COMMAND} -P ${ULIB_CMAKE_DIR}/clean-all.cmake
-)
-
-
-
-
 

src/Core/CMakeLists.txt

@@ -1,41 +1,27 @@
 
-set(HEADERS
+set(HEADERS Options.h
-                                Archives.h
+            StaticInterface.h)
-                                Array.h
+
-                                Debug.h
+set(SOURCES Options.cpp)
-                                Export.h
+
-                                Function.h
+set(LIBRARIES ${Boost_PROGRAM_OPTIONS_LIBRARY})
-                                Macros.h
+
-                                Mpl.h
+set(libname ${PACKAGE_LIBPREFIX}Core)
-                                Object.h
+set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
-                                ObjectProps.h
+set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Core PARENT_SCOPE)
-                                Options.h
+
-                                Serializable.h
+add_library(${libname} SHARED ${SOURCES})
-                                Signal.h
+set_target_properties(${libname} PROPERTIES
-                                Singleton.h
+                      VERSION ${PROJECT_VERSION}
-                                SmartPointer.h
+                      SOVERSION ${PROJECT_SOVERSION})
-                                StaticInterface.h
+target_link_libraries(${libname} ${LIBRARIES})
-                                StringReader.h
+
-                                Types.h
+install(TARGETS ${libname}
-                                Uuid.h
+        EXPORT "${PROJECT_NAME}Targets"
-                                Timer.h
+        RUNTIME DESTINATION ${PACKAGE_INSTALL_BIN_DIR} COMPONENT bin
-)
+        LIBRARY DESTINATION ${PACKAGE_INSTALL_LIB_DIR} COMPONENT lib)
+
+install(FILES ${HEADERS} DESTINATION ${PACKAGE_INSTALL_INC_DIR}/Core)
 
-SET(SOURCES
-                Archives.cpp
-                Object.cpp
-                Options.cpp
-                Serializable.cpp
-                Signal.cpp
-                Uuid.cpp
-)
 
-set(LIBRARIES
-       ${Boost_SERIALIZATION_LIBRARY}
-       ${Boost_SIGNALS_LIBRARY}
-       ${Boost_PROGRAM_OPTIONS_LIBRARY}
-       ${ROOT_LIBRARIES}
-)
 
-uLib_add_shared_library(${uLib-module})
-add_subdirectory(testing)

src/Detectors/CMakeLists.txt

@@ -1,37 +1,6 @@
-#set(HEADERS
-#                                DetectorChamber.h
-#                                ExperimentFitEvent.h
-#                                GeantEvent.h
-#                                HitMC.h
-#                                MuonScatter.h
-#                                MuonEvent.h
-#                                MuonError.h
-#                                ChamberHitEvent.h
-#                                Hit.h
-#                                LinearFit.h
-#                                Solid.h
-#                                Matter.h
-#                                Scene.h
-#)
-
-
-#set(SOURCES
-#                Solid.cpp
-#                Scene.cpp
-#)
-
-#set(LIBRARIES
-#       ${Boost_SERIALIZATION_LIBRARY}
-#       ${Boost_SIGNALS_LIBRARY}
-#       ${Boost_PROGRAM_OPTIONS_LIBRARY}
-#       ${Eigen_LIBRARY}
-#       ${Geant4_LIBRARIES}
-#       ${ROOT_LIBRARIES}
-#       ${PACKAGE_LIBPREFIX}Core
-#       ${PACKAGE_LIBPREFIX}Math
-#)
-
 set(HEADERS MuonScatter.h MuonError.h MuonEvent.h)
 
-uLib_add_shared_library(${uLib-module})
+set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Detectors PARENT_SCOPE)
-add_subdirectory(testing)
+
+install(FILES ${HEADERS}
+        DESTINATION ${PACKAGE_INSTALL_INC_DIR}/Detectors)

src/Math/CMakeLists.txt

@@ -1,53 +1,53 @@
+set(HEADERS ContainerBox.h
+            Dense.h
+            Geometry.h
+            Transform.h
+            StructuredData.h
+            StructuredGrid.h
+            VoxImage.h
+            VoxRaytracer.h
+            Utils.h
+            VoxImageFilter.h
+            VoxImageFilter.hpp
+            VoxImageFilterLinear.hpp
+            VoxImageFilterMedian.hpp
+            VoxImageFilterABTrim.hpp
+            VoxImageFilterBilateral.hpp
+            VoxImageFilterThreshold.hpp
+            VoxImageFilter2ndStat.hpp
+            VoxImageFilterCustom.hpp
+            Accumulator.h
+            TriangleMesh.h
+            BitCode.h
+            Structured2DGrid.h
+            Structured4DGrid.h)
 
-# HEADERS
+set(SOURCES VoxRaytracer.cpp
-set(HEADERS
+            StructuredData.cpp
-                                ContainerBox.h
+            StructuredGrid.cpp
-                                Dense.h
+            VoxImage.cpp
-                                Geometry.h
+            TriangleMesh.cpp
-                                Transform.h
+            Dense.cpp
-                                StructuredData.h
+            Structured2DGrid.cpp
-                                StructuredGrid.h
+            Structured4DGrid.cpp)
-                                VoxImage.h
-                                VoxRaytracer.h
-                                Utils.h
-                                VoxImageFilter.h
-                                VoxImageFilter.hpp
-                                VoxImageFilterLinear.hpp
-                                VoxImageFilterMedian.hpp
-                                VoxImageFilterABTrim.hpp
-                                VoxImageFilterBilateral.hpp
-                                VoxImageFilterThreshold.hpp
-                                VoxImageFilter2ndStat.hpp
-                                VoxImageFilterCustom.hpp
-                                Accumulator.h
-                                TriangleMesh.h
-                                BitCode.h
-                                Structured2DGrid.h
-                                Structured4DGrid.h
-)
 
+set(LIBRARIES ${Eigen_LIBRARY}
+              ${ROOT_LIBRARIES})
 
-# SOURCES
+set(libname ${PACKAGE_LIBPREFIX}Math)
-set(SOURCES
+set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
-                VoxRaytracer.cpp
+set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Math PARENT_SCOPE)
-                StructuredData.cpp
-                StructuredGrid.cpp
-                VoxImage.cpp
-                TriangleMesh.cpp
-                Dense.cpp
-                Structured2DGrid.cpp
-                Structured4DGrid.cpp
-)
 
-set(LIBRARIES
+add_library(${libname} SHARED ${SOURCES})
-       ${Boost_SERIALIZATION_LIBRARY}
+set_target_properties(${libname} PROPERTIES
-       ${Boost_SIGNALS_LIBRARY}
+                      VERSION ${PROJECT_VERSION}
-       ${Boost_PROGRAM_OPTIONS_LIBRARY}
+                      SOVERSION ${PROJECT_SOVERSION})
-       ${Eigen_LIBRARY}
+target_link_libraries(${libname} ${LIBRARIES})
-       ${ROOT_LIBRARIES}
-       ${PACKAGE_LIBPREFIX}Core
-)
 
+install(TARGETS ${libname}
+        EXPORT "${PROJECT_NAME}Targets"
+        RUNTIME DESTINATION ${PACKAGE_INSTALL_BIN_DIR} COMPONENT bin
+        LIBRARY DESTINATION ${PACKAGE_INSTALL_LIB_DIR} COMPONENT lib)
+
+install(FILES ${HEADERS} DESTINATION ${PACKAGE_INSTALL_INC_DIR}/Math)
 
-uLib_add_shared_library(${uLib-module})
-add_subdirectory(testing)

src/Math/VoxImageFilterCustom.hpp

@@ -28,11 +28,12 @@
 #ifndef VOXIMAGEFILTERCUSTOM_HPP
 #define VOXIMAGEFILTERCUSTOM_HPP
 
-#include "Core/Macros.h"
 #include <Math/Dense.h>
 #include "Math/VoxImage.h"
 #include "VoxImageFilter.h"
 
+#define likely(expr) __builtin_expect(!!(expr), 1)
+
 ////////////////////////////////////////////////////////////////////////////////
 /////  VOXIMAGE FILTER CUSTOM  /////////////////////////////////////////////////
 ////////////////////////////////////////////////////////////////////////////////

src/Math/VoxRaytracer.cpp

@@ -24,12 +24,12 @@
 //////////////////////////////////////////////////////////////////////////////*/
 
 
-
+#include <iostream>
 
 #include "VoxRaytracer.h"
 #include "Utils.h"
 
-#include "Core/Macros.h"
+#define unlikely(expr) __builtin_expect(!!(expr), 0)
 
 inline float fast_sign(float f) { return 1 - 2 * (f < 0); }
 

src/Root/CMakeLists.txt

@@ -1,55 +1,58 @@
-set(HEADERS
+set(HEADERS RootMathDense.h
- TestTObject.h
+            RootMuonScatter.h
- RootMathDense.h
+            RootHitRaw.h
- RootMuonScatter.h
+            muCastorMCTrack.h
- RootHitRaw.h
+            muCastorHit.h
- muBlastHit.h
+            muCastorInfo.h
- muBlastMCTrack.h
+            muCastorSkinHit.h
- muCastorMCTrack.h
+            SkinDetectorWriter.h)
- muCastorHit.h
- muCastorInfo.h
-)
 
-set(DICTIONARY_HEADERS
+set(SOURCES ${HEADERS} RootMuonScatter.cpp
- TestTObject.h
+                       muCastorMCTrack.cpp
- RootMathDense.h
+                       muCastorHit.cpp
- RootMuonScatter.h
+                       muCastorInfo.cpp
- RootHitRaw.h
+                       muCastorSkinHit.cpp
- muBlastHit.h
+                       SkinDetectorWriter.cpp)
- muBlastMCTrack.h
- muCastorMCTrack.h
- muCastorHit.h
- muCastorInfo.h
-)
 
-SET(SOURCES
+set(DICTIONARY_HEADERS muCastorMCTrack.h
- TestTObject.cpp
+                       muCastorHit.h
- RootMuonScatter.cpp
+                       muCastorInfo.h
- muBlastHit.cpp
+                       muCastorSkinHit.h
- muBlastMCTrack.cpp
+                       SkinDetectorWriter.h)
- muCastorMCTrack.cpp
- muCastorHit.cpp
- muCastorInfo.cpp
-)
 
-set(LIBRARIES
+set(LIBRARIES ${ROOT_LIBRARIES}
-#       ${Boost_SERIALIZATION_LIBRARY}
+              ${PACKAGE_LIBPREFIX}Math)
-#       ${Boost_SIGNALS_LIBRARY}
-#       ${Boost_PROGRAM_OPTIONS_LIBRARY}
-       ${ROOT_LIBRARIES}
-       ${PACKAGE_LIBPREFIX}Core
-       ${PACKAGE_LIBPREFIX}Math
-)
 
-include(FindROOTv6)
+set(rDictName ${PACKAGE_LIBPREFIX}RootDict)
-root_generate_dictionary(uLibRootDict ${DICTIONARY_HEADERS} LINKDEF Linkdef.h)
+root_generate_dictionary(${rDictName} ${DICTIONARY_HEADERS}
-set_source_files_properties(uLibRootDict.cxx PROPERTIES GENERATED TRUE)
+                         LINKDEF Linkdef.h)
-set_source_files_properties(uLibRootDict.h PROPERTIES GENERATED TRUE)
+set_source_files_properties(${rDictName}.cxx
-list(APPEND SOURCES     uLibRootDict.cxx)
+                            PROPERTIES GENERATED TRUE)
+set_source_files_properties(${rDictName}.h
+                            PROPERTIES GENERATED TRUE)
+list(APPEND SOURCES ${rDictName}.cxx)
 
 # TODO use a custom target linked to root_generate_dictionary
-install(FILES ${CMAKE_CURRENT_BINARY_DIR}/uLibRootDict_rdict.pcm
+set(R_ARTIFACTS ${CMAKE_CURRENT_BINARY_DIR}/lib${rDictName}_rdict.pcm
+                ${CMAKE_CURRENT_BINARY_DIR}/lib${rDictName}.rootmap)
+install(FILES ${R_ARTIFACTS}
         DESTINATION ${PACKAGE_INSTALL_LIB_DIR})
 
-uLib_add_shared_library(${uLib-module})
+set(libname ${PACKAGE_LIBPREFIX}Root)
-add_subdirectory(testing)
+set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
+set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Root PARENT_SCOPE)
+
+add_library(${libname} SHARED ${SOURCES})
+set_target_properties(${libname} PROPERTIES
+                      VERSION ${PROJECT_VERSION}
+                      SOVERSION ${PROJECT_SOVERSION})
+target_link_libraries(${libname} ${LIBRARIES})
+
+install(TARGETS ${libname}
+        EXPORT "${PROJECT_NAME}Targets"
+        RUNTIME DESTINATION ${PACKAGE_INSTALL_BIN_DIR} COMPONENT bin
+        LIBRARY DESTINATION ${PACKAGE_INSTALL_LIB_DIR} COMPONENT lib)
+
+install(FILES ${HEADERS} DESTINATION ${PACKAGE_INSTALL_INC_DIR}/Root)
+
+

src/Root/Linkdef.h

@@ -79,6 +79,9 @@ using namespace ROOT::Mutom;
 #pragma link C++ class  muCastorMCTrack+;
 #pragma link C++ class  muCastorHit+;
 #pragma link C++ class  muCastorInfo+;
+#pragma link C++ class  muCastorSkinHit+;
+
+#pragma link C++ class  SkinDetectorWriter+;
 
 #endif // __CINT__
 

src/Root/SkinDetectorWriter.cpp

@@ -0,0 +1,47 @@
+#include "SkinDetectorWriter.h"
+#include "muCastorSkinHit.h"
+#include "TVector3.h"
+
+SkinDetectorWriter::SkinDetectorWriter(string filename) :
+    t_file(nullptr),
+    t_tree(nullptr),
+    t_buffer(nullptr),
+    i_status(0)
+{
+    t_file = new TFile(filename.c_str(), "RECREATE");
+    t_tree = new TTree("muCastorMC", "muCastorMC");
+    t_buffer = new TClonesArray("muCastorSkinHit");
+
+    t_tree->Branch("CastorSkinHits", "TClonesArray", t_buffer, 32000, 99);
+
+    if (t_file->IsZombie()) i_status = 1;
+}
+
+SkinDetectorWriter::~SkinDetectorWriter()
+{}
+
+void SkinDetectorWriter::add(int detID, float p_x, float p_y, float p_z,
+                             float m_x, float m_y, float m_z)
+{
+    TClonesArray& ref = *t_buffer;
+    int size = ref.GetEntriesFast();
+
+    muCastorSkinHit* new_hit = new(ref[size]) muCastorSkinHit();
+    new_hit->SetDetID(detID);
+    new_hit->SetPdgCode(13);
+    new_hit->SetMotherID(-1);
+    new_hit->SetPos (TVector3(p_x, p_y, p_z));
+    new_hit->SetMom (TVector3(m_x, m_y, m_z));
+}
+
+void SkinDetectorWriter::write()
+{
+    if (t_tree->Fill() < 0) i_status = 2;
+    t_buffer->Delete();   // or t_buffer->Clear() ??
+}
+
+void SkinDetectorWriter::close()
+{
+    if (t_tree->Write() == 0) i_status = 3;
+    t_file->Close();
+}

src/Root/SkinDetectorWriter.h

@@ -0,0 +1,32 @@
+#ifndef SkinDetectorWriter_h
+#define SkinDetectorWriter_h
+
+#include <string>
+
+#include "TFile.h"
+#include "TTree.h"
+#include "TClonesArray.h"
+
+using std::string;
+
+class SkinDetectorWriter
+{
+public:
+    SkinDetectorWriter(string filename);
+    virtual ~SkinDetectorWriter();
+
+    void add(int detID, float p_x, float p_y, float p_z, float m_x, float m_y, float m_z);
+    int status() { return i_status; }
+    void write();
+    void close();
+
+private:
+    TFile* t_file;
+    TTree* t_tree;
+    TClonesArray* t_buffer;
+    int i_status;
+};
+
+
+
+#endif //SkinDetectorWriter_h

src/Root/muBlastMCTrack.h

@@ -9,6 +9,7 @@
 //         Martin Subieta   martin.subieta@ing.unibs.it
 //########################################
 
+#include <iostream>
 #include <vector>
 #include "TObject.h"
 #include "TParticle.h"

src/Root/muCastorMCTrack.h

@@ -9,6 +9,7 @@
 //         Martin Subieta   martin.subieta@ing.unibs.it
 //########################################
 
+#include <iostream>
 #include "vector"
 #include "TObject.h"
 #include "TParticle.h"

src/Root/muCastorSkinHit.cpp

@@ -0,0 +1,43 @@
+//----------------------------------------------------------
+// Class : CastorSkinHit 
+// Date: October 2020
+// Author: Germano Bonomi   germano.bonomi@unibs.it
+//----------------------------------------------------------
+
+#include <iostream>
+
+#include "muCastorSkinHit.h"
+
+/// \cond CLASSIMP
+ClassImp(muCastorSkinHit)
+/// \endcond
+
+using namespace std;
+
+//_____________________________________________________________________________
+muCastorSkinHit::muCastorSkinHit() :
+    fDetID(-1),
+    fPdgCode(-1),
+    fMotherID(-1),
+    fMomX(0.),
+    fMomY(0.),
+    fMomZ(0.),
+    fPosX(0.),
+    fPosY(0.),
+    fPosZ(0.)
+{}
+
+//_____________________________________________________________________________
+muCastorSkinHit::~muCastorSkinHit() 
+{}
+//_____________________________________________________________________________
+void muCastorSkinHit::Print(const Option_t* /*opt*/) const
+{
+    cout << "  detID: " << fDetID 
+         << "  position (cm): (" 
+         << fPosX << ", " << fPosY << ", " << fPosZ << ")"
+         << "  momentum (MeV/c): (" 
+         << fMomX << ", " << fMomY << ", " << fMomZ << ")"
+         << endl;
+}
+

src/Root/muCastorSkinHit.h

@@ -0,0 +1,52 @@
+//----------------------------------------------------------
+// Class : CastorSkinHit 
+// Date: October 2020
+// Author: Germano Bonomi   germano.bonomi@unibs.it
+//----------------------------------------------------------
+
+#ifndef muCastor_SKINHIT_H
+#define muCastor_SKINHIT_H
+
+
+#include <TObject.h>
+#include <TVector3.h>
+
+class muCastorSkinHit : public TObject
+{
+public:
+    muCastorSkinHit();
+    virtual ~muCastorSkinHit();
+
+    // methods
+    virtual void Print(const Option_t* option = "") const;
+
+    // set methods
+    void SetDetID(Int_t id)         { fDetID = id; };  
+    void SetPdgCode(Int_t pdg)      { fPdgCode = pdg; };
+    void SetMotherID(Int_t mid)     { fMotherID = mid; };
+    void SetMom(TVector3 xyz)       { fMomX = xyz.X(); fMomY = xyz.Y(); fMomZ = xyz.Z(); };
+    void SetPos(TVector3 xyz)       { fPosX = xyz.X(); fPosY = xyz.Y(); fPosZ = xyz.Z(); };
+
+    Int_t GetDetID()    { return fDetID; }
+    Int_t GetPdgCode()  { return fPdgCode; }
+    Int_t GetMotherID() { return fMotherID; }
+    TVector3 GetMom()   { return TVector3(fMomX, fMomY, fMomZ); }
+    TVector3 GetPos()   { return TVector3(fPosX, fPosY, fPosZ); }
+      
+private:
+    Int_t      fDetID;      // Detector module ID 
+    Int_t      fPdgCode;    // Particle PDG Code
+    Int_t      fMotherID;   // Particle mother ID (-1 = primary, 0 = secondary, etc..)
+    Double_t   fMomX;       // Track momentum when releasing the hit (X)
+    Double_t   fMomY;       // Track momentum when releasing the hit (Y)
+    Double_t   fMomZ;       // Track momentum when releasing the hit (Z)
+    Double_t   fPosX;       // Hit coordinates (at the entrance of the detector) (X)
+    Double_t   fPosY;       // Hit coordinates (at the entrance of the detector) (Y)
+    Double_t   fPosZ;       // Hit coordinates (at the entrance of the detector) (Z)
+    
+    ClassDef(muCastorSkinHit,1) //muCastorSkinHit  
+};
+
+#endif //muCastort_SKINHIT_H
+
+

src/Vtk/CMakeLists.txt

@@ -1,37 +1,38 @@
-set(HEADERS
+set(HEADERS uLibVtkInterface.h
-                          uLibVtkInterface.h
+            uLibVtkViewer.h
-                          uLibVtkViewer.h
+            vtkContainerBox.h
-                          vtkContainerBox.h
+            vtkMuonScatter.h
-                          vtkMuonScatter.h
+            vtkStructuredGrid.h
-                          vtkStructuredGrid.h
+            vtkVoxRaytracerRepresentation.h
-                          vtkVoxRaytracerRepresentation.h
+            vtkVoxImage.h)
-                          vtkVoxImage.h
-#                          vtkHLineRepresentation.h
-#			  vtkTriangleMesh.h
-)
 
-SET(SOURCES
+set(SOURCES uLibVtkInterface.cxx
-                uLibVtkInterface.cxx
+            uLibVtkViewer.cpp
-                uLibVtkViewer.cpp
+            vtkContainerBox.cpp
-                vtkContainerBox.cpp
+            vtkMuonScatter.cxx
-                vtkMuonScatter.cxx
+            vtkStructuredGrid.cpp
-                vtkStructuredGrid.cpp
+            vtkVoxRaytracerRepresentation.cpp
-                vtkVoxRaytracerRepresentation.cpp
+            vtkVoxImage.cpp)
-                vtkVoxImage.cpp
-)
 
-set(LIBRARIES
+set(LIBRARIES ${Eigen_LIBRARY}
-       ${Boost_SERIALIZATION_LIBRARY}
+              ${ROOT_LIBRARIES}
-       ${Boost_SIGNALS_LIBRARY}
+              ${VTK_LIBRARIES}
-       ${Boost_PROGRAM_OPTIONS_LIBRARY}
+              ${PACKAGE_LIBPREFIX}Math)
-       ${Eigen_LIBRARY}
-       ${ROOT_LIBRARIES}
-       ${Geant4_LIBRARIES}
-       ${VTK_LIBRARIES}
-       ${PACKAGE_LIBPREFIX}Core
-       ${PACKAGE_LIBPREFIX}Math
-)
 
-uLib_add_shared_library(${uLib-module})
+set(libname ${PACKAGE_LIBPREFIX}Vtk)
+set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
+set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Vtk PARENT_SCOPE)
+
+add_library(${libname} SHARED ${SOURCES})
+set_target_properties(${libname} PROPERTIES
+                      VERSION ${PROJECT_VERSION}
+                      SOVERSION ${PROJECT_SOVERSION})
+target_link_libraries(${libname} ${LIBRARIES})
+
+install(TARGETS ${libname}
+        EXPORT "${PROJECT_NAME}Targets"
+        RUNTIME DESTINATION ${PACKAGE_INSTALL_BIN_DIR} COMPONENT bin
+        LIBRARY DESTINATION ${PACKAGE_INSTALL_LIB_DIR} COMPONENT lib)
+
+install(FILES ${HEADERS} DESTINATION ${PACKAGE_INSTALL_INC_DIR}/Vtk)
 
-add_subdirectory(testing)

src/ltk/main.C

@@ -1,35 +0,0 @@
-/*//////////////////////////////////////////////////////////////////////////////
-// CMT Cosmic Muon Tomography project //////////////////////////////////////////
-////////////////////////////////////////////////////////////////////////////////
-
-  Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova
-  All rights reserved
-
-  Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it >
-
-  ------------------------------------------------------------------
-  This library is free software;  you  can  redistribute  it  and/or
-  modify it  under the  terms  of  the  GNU  Lesser  General  Public
-  License as published  by  the  Free  Software  Foundation;  either
-  version 3.0 of the License, or (at your option) any later version.
-
-  This library is  distributed in  the hope that it will  be useful,
-  but  WITHOUT ANY WARRANTY;  without  even  the implied warranty of
-  MERCHANTABILITY  or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-  Lesser General Public License for more details.
-
-  You should have received a copy of  the GNU Lesser General  Public
-  License along with this library.
-
-//////////////////////////////////////////////////////////////////////////////*/
-
-
-
-
-#include "Object.h"
-
-
-int main()
-{
-  return 0;
-}

uLibConfig.cmake.in

@@ -9,11 +9,7 @@ get_filename_component(ULIB_CMAKE_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH)
 set(ULIB_INCLUDE_DIRS "@CONF_INCLUDE_DIRS@")
 
 # Our library dependencies (contains definitions for IMPORTED targets)
-# if(NOT TARGET foo AND NOT FooBar_BINARY_DIR)
+include("${ULIB_CMAKE_DIR}/uLibTargets.cmake")
-  include("${ULIB_CMAKE_DIR}/uLibTargets.cmake")
-# endif()
 
 # These are IMPORTED targets created by FooBarTargets.cmake
-# set(FOOBAR_LIBRARIES foo)
-# set(FOOBAR_EXECUTABLE bar)
 set(ULIB_LIBRARIES @ULIB_SHARED_LIBRARIES@)