19 Commits

Author SHA1 Message Date
AndreaRigoni
54997fe0ac fix mismatch Origin - Position 2025-09-25 17:34:23 +02:00
AndreaRigoni
fc909da400 fix export to Vti 2025-09-23 18:21:11 +02:00
b0240dc807 Merge pull request #1 from OpenCMT/andrea-dev
Andrea dev
2025-09-18 13:12:12 +02:00
AndreaRigoni
591cc9d8bc add version 0.6 - make external build possible 2025-09-05 18:04:54 +02:00
AndreaRigoni
2e401f6fc5 add posibility to compile in build directory 2025-09-04 16:12:38 +02:00
AndreaRigoni
91abd56587 fix Root needs for C++17 2025-09-04 16:11:57 +02:00
AndreaRigoni
01ff8a0a0d update 2025-09-02 13:01:55 +02:00
AndreaRigoni
b86e27a9c4 add VTK save early 2025-09-02 12:42:46 +02:00
Paolo Andreetto
820730bc84 New root dicts 2023-09-01 14:14:06 +02:00
Paolo Andreetto
06c363ab8c Workaround for CentOS7 2023-04-04 16:31:30 +02:00
Paolo Andreetto
b7c775ee35 Error handling 2023-02-22 11:20:56 +01:00
Paolo Andreetto
7bc4932d09 Missing component for VTK 2023-02-20 16:10:10 +01:00
Paolo Andreetto
8832f47e75 Fixed build for VTK on alma9 2023-02-20 16:08:30 +01:00
Paolo Andreetto
043a44150c New writer class for the skin detector 2023-02-17 14:35:31 +01:00
Paolo Andreetto
fce2a39393 Changed version 2023-01-17 10:36:34 +01:00
Paolo Andreetto
d223a3a308 Restored classes for Castor 2023-01-17 10:36:05 +01:00
Paolo Andreetto
843a2d69cf Removed structures for Castor and muBlast 2020-09-29 15:23:08 +02:00
Paolo Andreetto
a60a21bfe4 Massive reorganization of CMake files 2020-06-29 14:44:26 +02:00
Paolo Andreetto
9d899928b8 Bug fixed for MacOD: removed macro 2020-04-28 13:34:07 +02:00
36 changed files with 1046 additions and 509 deletions

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@@ -1,116 +0,0 @@
Summary: Cosmic Muon Tomography core libraries
Name: cmt-ulib
Version: @PKGVERSION@
Release: @PKGRELEASE@%{?dist}
License: EUROPEAN UNION PUBLIC LICENCE v. 1.2
Vendor: INFN
URL: https://github.com/OpenCMT/uLib
Group: Development/Libraries
BuildArch: %{_arch}
%if %{?rhel}%{!?rhel:0} >= 8
BuildRequires: cmake
%else
BuildRequires: cmake3
%endif
BuildRequires: doxygen
BuildRequires: boost-devel
BuildRequires: eigen3-devel
BuildRequires: vtk-devel
BuildRequires: readline-devel
BuildRequires: pcl-devel
BuildRequires: root-geom
BuildRequires: root-genvector
BuildRequires: root-smatrix
BuildRequires: root-montecarlo-eg
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
AutoReqProv: yes
Source: %{name}-%{version}.tar.gz
%description
This package contains the base toolkit library for Cosmic Muon Tomography reconstruction,
analysis and imaging software Developed by University of Padova and INFN Sezione di Padova Italy
%global _ulibpkgname mutom
%global _ulibcmakedir %{_libdir}/cmake/%{_ulibpkgname}
%prep
%setup -c
rm -rf %{buildroot}
mkdir -p %{buildroot}
%build
mkdir %{_builddir}/%{name}-%{version}/build
cd %{_builddir}/%{name}-%{version}/build
%cmake -DCMAKE_INSTALL_PREFIX=%{buildroot}%{_prefix} \
-DCMAKE_BUILD_TYPE=RelWithDebInfo \
-DPACKAGE_NAME=%{_ulibpkgname} \
-DPACKAGE_INSTALL_LIB_DIR=%{buildroot}%{_libdir} \
-DPACKAGE_INSTALL_INC_DIR=%{buildroot}%{_includedir}/%{_ulibpkgname} \
-DPACKAGE_INSTALL_CMAKE_DIR=%{buildroot}%{_ulibcmakedir} \
-DNODOXYGEN=ON \
%{_builddir}/%{name}-%{version}
make %{?_smp_mflags}
%install
cd %{_builddir}/%{name}-%{version}/build
make install
sed -i 's|%{buildroot}/usr|%{_prefix}|g' %{buildroot}%{_ulibcmakedir}/uLibTargets.cmake
sed -i 's|%{buildroot}/usr|%{_prefix}|g' %{buildroot}%{_ulibcmakedir}/uLibTargets-relwithdebinfo.cmake
%clean
rm -rf %{buildroot}
%files
%defattr(-,root,root)
%{_libdir}/libmutom*.so.0.2
%{_libdir}/uLibRootDict_rdict.pcm
%package devel
Summary: Cosmic Muon Tomography core libraries, development files
Requires: %{name}
Requires: boost-devel
Requires: eigen3-devel
Requires: vtk-devel
Requires: readline-devel
Requires: pcl-devel
Requires: root-geom
Requires: root-genvector
Requires: root-smatrix
Requires: root-montecarlo-eg
%description devel
This package contains the base toolkit library for Cosmic Muon Tomography reconstruction,
analysis and imaging software Developed by University of Padova and INFN Sezione di Padova Italy
%files devel
%defattr(-,root,root)
%dir %{_ulibcmakedir}
/usr/bin/uLib_config
%{_libdir}/libmutom*.so
%{_ulibcmakedir}/*.cmake
%dir %{_includedir}/%{_ulibpkgname}
%dir %{_includedir}/%{_ulibpkgname}/Core
%dir %{_includedir}/%{_ulibpkgname}/Math
%dir %{_includedir}/%{_ulibpkgname}/Root
%dir %{_includedir}/%{_ulibpkgname}/Detectors
%dir %{_includedir}/%{_ulibpkgname}/Vtk
%{_includedir}/%{_ulibpkgname}/*.h
%{_includedir}/%{_ulibpkgname}/Core/*.h
%{_includedir}/%{_ulibpkgname}/Math/*.h
%{_includedir}/%{_ulibpkgname}/Math/*.hpp
%{_includedir}/%{_ulibpkgname}/Root/*.h
%{_includedir}/%{_ulibpkgname}/Detectors/*.h
%{_includedir}/%{_ulibpkgname}/Vtk/*.h
%changelog
* Tue Dec 04 2018 Paolo Andreetto <paolo.andreetto@pd.infn.it> - 0.2.1-1
- Repackaging for CentOS 7

View File

@@ -15,16 +15,16 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/bin CACHE PATH "build path for
mark_as_advanced(EXECUTABLE_OUTPUT_PATH)
## Install directories ##
set(PACKAGE_INSTALL_BIN_DIR bin CACHE PATH "Installation directory for executables")
set(PACKAGE_INSTALL_LIB_DIR lib/${PACKAGE_NAME} CACHE PATH "Installation directory for libraries")
set(PACKAGE_INSTALL_INC_DIR include/${PACKAGE_NAME} CACHE PATH "Installation directory for headers")
set(PACKAGE_INSTALL_DATA_DIR share/${PACKAGE_NAME} CACHE PATH "Installation directory for data files")
set(INSTALL_BIN_DIR bin CACHE PATH "Installation directory for executables")
set(INSTALL_LIB_DIR lib/${PACKAGE_NAME} CACHE PATH "Installation directory for libraries")
set(INSTALL_INC_DIR include/${PACKAGE_NAME} CACHE PATH "Installation directory for headers")
set(INSTALL_DATA_DIR share/${PACKAGE_NAME} CACHE PATH "Installation directory for data files")
if(WIN32 AND NOT CYGWIN)
set(DEF_INSTALL_CMAKE_DIR CMake)
else()
set(DEF_INSTALL_CMAKE_DIR lib/cmake/${PACKAGE_NAME})
endif()
set(PACKAGE_INSTALL_CMAKE_DIR ${DEF_INSTALL_CMAKE_DIR} CACHE PATH "Installation directory for CMake files")
set(INSTALL_CMAKE_DIR ${DEF_INSTALL_CMAKE_DIR} CACHE PATH "Installation directory for CMake files")
# Make relative paths absolute (needed later on)
foreach(p LIB BIN INC DATA CMAKE)
@@ -58,7 +58,7 @@ endif()
set(CMAKE_CXX_WARNING_OPTION "" CACHE STRING "Warning level -WAll to verbose all warnings")
set(CMAKE_VERBOSE_MAKEFILE FALSE CACHE STRING "Verbose compile output switch")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++0x ${CMAKE_CXX_WARNING_OPTION}")
# set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++0x ${CMAKE_CXX_WARNING_OPTION}")

View File

@@ -13,7 +13,7 @@ set(Boost_USE_STATIC_LIBS OFF)
set(Boost_USE_MULTITHREADED ON)
set(Boost_USE_STATIC_RUNTIME OFF)
find_package(Boost 1.45.0 COMPONENTS serialization signals program_options REQUIRED)
find_package(Boost 1.45.0 COMPONENTS program_options REQUIRED)
if(Boost_FOUND)
set(HAVE_BOOST true)
endif(Boost_FOUND)

View File

@@ -1,34 +0,0 @@
# Target for RPMs creation
set(PKGREL 1 CACHE STRING "Package build number")
set(ITEMS_FOR_SOURCE AUTHORS
CMakeConfig.in.h
CMakePkgConfig.pc.in
test.cpp
uLibConfig.cmake.in
uLib.creator
ulib.h
vtk_test.cpp
CMake
CMakeLists.txt
Jenkinsfile
src
uLib.config
uLibConfigVersion.cmake.in
uLib.files
uLib.includes)
add_custom_target(rpm
COMMAND mkdir -p ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/BUILD
${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/RPMS
${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SOURCES
${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SPECS
${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SRPMS
COMMAND tar -zcf ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SOURCES/cmt-ulib-${PACKAGE_VERSION}.tar.gz ${ITEMS_FOR_SOURCE}
COMMAND sed -e 's|@PKGVERSION@|${PACKAGE_VERSION}|g'
-e 's|@PKGRELEASE@|${PKGREL}|g'
CMake/cmt-ulib.spec.in > ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SPECS/cmt-ulib.spec
COMMAND QA_SKIP_BUILD_ROOT=1 rpmbuild -ba --define '_topdir ${CMAKE_CURRENT_BINARY_DIR}/rpmbuild'
${CMAKE_CURRENT_BINARY_DIR}/rpmbuild/SPECS/cmt-ulib.spec
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})

View File

@@ -41,15 +41,15 @@ macro(uLib_add_shared_library name)
install(TARGETS ${mname}
EXPORT "${PROJECT_NAME}Targets"
RUNTIME DESTINATION ${PACKAGE_INSTALL_BIN_DIR} COMPONENT bin
LIBRARY DESTINATION ${PACKAGE_INSTALL_LIB_DIR} COMPONENT lib
# PUBLIC_HEADER DESTINATION ${PACKAGE_INSTALL_INC_DIR} COMPONENT dev
RUNTIME DESTINATION ${INSTALL_BIN_DIR} COMPONENT bin
LIBRARY DESTINATION ${INSTALL_LIB_DIR} COMPONENT lib
# PUBLIC_HEADER DESTINATION ${INSTALL_INC_DIR} COMPONENT dev
)
endif(SOURCES)
if(HEADERS)
foreach(header ${HEADERS})
install(FILES ${header} DESTINATION ${PACKAGE_INSTALL_INC_DIR}/${name})
install(FILES ${header} DESTINATION ${INSTALL_INC_DIR}/${name})
endforeach(header)
endif(HEADERS)
@@ -70,7 +70,7 @@ macro(uLib_add_target name)
install(TARGETS ${name}
EXPORT "${PROJECT_NAME}Targets"
RUNTIME DESTINATION ${PACKAGE_INSTALL_BIN_DIR} COMPONENT bin
RUNTIME DESTINATION ${INSTALL_BIN_DIR} COMPONENT bin
)
ENDMACRO(uLib_add_target)

View File

@@ -3,7 +3,7 @@
##### CMAKE LISTS ##############################################################
################################################################################
cmake_minimum_required (VERSION 2.6)
cmake_minimum_required (VERSION 3.26)
## -------------------------------------------------------------------------- ##
@@ -11,7 +11,7 @@ project(uLib)
# The version number.
set(PROJECT_VERSION_MAJOR 0)
set(PROJECT_VERSION_MINOR 2)
set(PROJECT_VERSION_MINOR 6)
set(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}")
set(PROJECT_SOVERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}")
@@ -26,130 +26,243 @@ set(PACKAGE_AUTHOR "Andrea Rigoni Garola <andrea.rigoni@pd.infn.it>")
set(ULIB_CMAKE_DIR "${PROJECT_SOURCE_DIR}/CMake")
set(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/CMake" ${CMAKE_MODULE_PATH})
message(STATUS "Module path: ${CMAKE_MODULE_PATH}")
include(uLibMacros)
include(uLibDebugMacro)
include(uLibTargetMacros)
#include(uLibGenerateRMake)
message(STATUS "Project name = ${PROJECT_NAME}")
message(STATUS "Package name = ${PACKAGE_NAME}")
message(STATUS "Package version = ${PACKAGE_VERSION}")
message(STATUS "Module path = ${CMAKE_MODULE_PATH}")
## GLOBALS ------------------------------------------------------------------ ##
include(uLibCommon)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ") ## Add flags here ##
# -- move to GnuInstallDirs
# ref: https://cmake.org/cmake/help/latest/module/GNUInstallDirs.html
include(GNUInstallDirs)
set(INSTALL_INC_DIR ${CMAKE_INSTALL_INCLUDEDIR}/${PACKAGE_NAME}
CACHE PATH "Location of header files (.../include)" )
set(INSTALL_ETC_DIR ${CMAKE_INSTALL_SYSCONFDIR}/${PACKAGE_NAME}
CACHE PATH "Location of configuration files (.../etc)" )
set(INSTALL_BIN_DIR ${CMAKE_INSTALL_BINDIR}/${PACKAGE_NAME}
CACHE PATH "Location of executable files (.../bin)" )
set(INSTALL_LIB_DIR ${CMAKE_INSTALL_LIBDIR}
CACHE PATH "Location of library files (.../lib)" )
set(INSTALL_CMAKE_DIR ${CMAKE_INSTALL_LIBDIR}/cmake/${PACKAGE_NAME}
CACHE PATH "Location of cmake files (.../lib/cmake)" )
set(INSTALL_DATA_DIR ${CMAKE_INSTALL_DATADIR}/${PACKAGE_NAME}
CACHE PATH "Location of data files (.../share)" )
set(SRC_DIR ${PROJECT_SOURCE_DIR}/src)
# this is used to be exported in build target
# ( to compile against build directory instead of install )
set(ULIB_SOURCE_DIR ${PROJECT_SOURCE_DIR})
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
message(STATUS "Setting build type to 'Release' as none was specified.")
set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING "Choose the type of build." FORCE)
set(CMAKE_EXE_LINKER_FLAGS "-Wl,--no-as-needed")
# Set the possible values of build type for cmake-gui
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY
STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
endif()
set(CMAKE_CXX_WARNING_OPTION ""
CACHE STRING "Warning level -WAll to verbose all warnings")
set(CMAKE_VERBOSE_MAKEFILE FALSE
CACHE STRING "Verbose compile output switch")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${CMAKE_CXX_WARNING_OPTION}")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -UULIB_SERIALIZATION_ON")
# CTEST framework
enable_testing()
## FIND PACKAGES ------------------------------------------------------------ ##
include(uLibFindDependencies)
set(Boost_USE_STATIC_LIBS OFF)
set(Boost_USE_MULTITHREADED ON)
set(Boost_USE_STATIC_RUNTIME OFF)
find_package(Boost 1.45.0 COMPONENTS program_options REQUIRED)
include_directories(${Boost_INCLUDE_DIRS})
find_package(Eigen3 CONFIG REQUIRED)
include(${EIGEN3_USE_FILE})
find_package(ROOT CONFIG REQUIRED)
include(${ROOT_USE_FILE})
find_package(VTK REQUIRED)
# include(${VTK_USE_FILE})
option(CENTOS_SUPPORT "VTK definitions for CentOS" OFF)
if(CENTOS_SUPPORT)
find_package(VTK CONFIG REQUIRED)
include(${VTK_USE_FILE})
else()
find_package(VTK REQUIRED
COMPONENTS CommonColor
CommonCore
FiltersCore
FiltersModeling
FiltersSources
IOLegacy
IOXML
IOXMLParser
ImagingCore
InteractionStyle
InteractionWidgets
RenderingAnnotation
RenderingContextOpenGL2
RenderingCore
RenderingFreeType
RenderingGL2PSOpenGL2
RenderingOpenGL2
RenderingVolumeOpenGL2)
endif()
set(CMAKE_REQUIRED_INCLUDES CMAKE_REQUIRED_INCLUDES math.h)
set(CMAKE_REQUIRED_LIBRARIES CMAKE_REQUIRED_LIBRARIES m)
## CONFIG ------------------------------------------------------------------- ##
include(uLibConfigHeader)
set(BOOST_PP_VARIADICS ON)
include(CheckIncludeFiles)
include(CheckFunctionExists)
include(CheckSymbolExists)
CHECK_INCLUDE_FILES(inittypes.h HAVE_INITTYPES_H)
CHECK_INCLUDE_FILES(stdbool.h HAVE_STDBOOL_H)
CHECK_INCLUDE_FILES(stdint.h HAVE_STDINT_H)
CHECK_INCLUDE_FILES(stdlib.h HAVE_STDLIB_H)
CHECK_INCLUDE_FILES(dlfcn.h HAVE_DLFCN_H)
CHECK_INCLUDE_FILES(malloc.h HAVE_MALLOC_H)
CHECK_FUNCTION_EXISTS(malloc HAVE_MALLOC)
CHECK_INCLUDE_FILES(memory.h HAVE_MEMORY_H)
CHECK_INCLUDE_FILES(math.h HAVE_MATH_H)
CHECK_FUNCTION_EXISTS(fsetround HAVE_FSETROUND)
CHECK_FUNCTION_EXISTS(floor HAVE_FLOOR)
CHECK_FUNCTION_EXISTS(pow HAVE_POW)
CHECK_FUNCTION_EXISTS(sqrt HAVE_SQRT)
CHECK_FUNCTION_EXISTS(strdup HAVE_STRDUP)
CHECK_FUNCTION_EXISTS(strstr HAVE_STRSTR)
CHECK_INCLUDE_FILES(strings.h HAVE_STRINGS_H)
CHECK_INCLUDE_FILES(string.h HAVE_STRING_H)
CHECK_INCLUDE_FILES(sys/stat.h HAVE_SYS_STAT_H)
CHECK_INCLUDE_FILES(sys/types.h HAVE_SYS_TYPES_H)
CHECK_INCLUDE_FILES(unistd.h HAVE_UNISTD_H)
CHECK_INCLUDE_FILES(assert.h HAVE_ASSERT_H)
configure_file("${PROJECT_SOURCE_DIR}/CMakeConfig.in.h"
"${PROJECT_BINARY_DIR}/config.h")
install(FILES "${PROJECT_BINARY_DIR}/config.h"
DESTINATION ${INSTALL_INC_DIR})
## ADD LIBRARIES SUBDIRECTORIES --------------------------------------------- ##
## select modules ##
set(ULIB_SELECTED_MODULES
Core
Math
Detectors
Root
)
include_directories(${PROJECT_BINARY_DIR})
include_directories(${SRC_DIR})
## uLib_add_shared_library puts names there
set(ULIB_SHARED_LIBRARIES)
## select modules ##
set(ULIB_SELECTED_MODULES)
if(ULIB_USE_VTK)
LIST(APPEND ULIB_SELECTED_MODULES Vtk)
endif(ULIB_USE_VTK)
include_directories(${SRC_DIR}/Core)
add_subdirectory(${SRC_DIR}/Core)
include_directories(${SRC_DIR}/Math)
add_subdirectory(${SRC_DIR}/Math)
include_directories(${SRC_DIR}/Detectors)
add_subdirectory(${SRC_DIR}/Detectors)
include_directories(${SRC_DIR}/Root)
add_subdirectory(${SRC_DIR}/Root)
include_directories(${SRC_DIR}/Vtk)
add_subdirectory(${SRC_DIR}/Vtk)
#add_subdirectory("${SRC_DIR}/utils/make_recipe")
## Documentation and packages
include(uLibGenerateRPMS)
include(uLibGenerateDoc)
## this gets ulib modules into a variable ##
function(uLib_modules result)
set(out)
foreach(module ${ULIB_SELECTED_MODULES})
list(APPEND out ${PACKAGE_LIBPREFIX}${module})
endforeach(module)
set(${result} "${out}" PARENT_SCOPE)
endfunction()
## ENTERING MODULES SUBDIRECTORIES ##
message("/////////// SELECTED MODULES //////////////")
foreach(module ${ULIB_SELECTED_MODULES})
message(STATUS "adding module: ${module}")
set( uLib-module ${module})
include_directories(${SRC_DIR}/${module})
add_subdirectory(${SRC_DIR}/${module})
endforeach(module)
#include(uLibGenerateDoc)
## UTILITIES ##
add_subdirectory("${SRC_DIR}/utils/make_recipe")
#add_subdirectory("${SRC_DIR}/utils/make_recipe")
## INSTALLS AND EXPORTS ----------------------------------------------------- ##
#export(PACKAGE uLib)
export(PACKAGE ULIB)
export(TARGETS ${ULIB_SHARED_LIBRARIES} ${ULIB_EXPORTED_TARGETS}
FILE "${PROJECT_BINARY_DIR}/uLibTargets.cmake" )
#export(TARGETS ${ULIB_EXPORTED_TARGETS}
# FILE "${PROJECT_BINARY_DIR}/uLibExeTargets.cmake" )
#export(PACKAGE ULIB)
#export(TARGETS ${ULIB_SHARED_LIBRARIES} ${ULIB_EXPORTED_TARGETS}
# FILE "${PROJECT_BINARY_DIR}/uLibTargets.cmake" )
# Create the FooBarConfig.cmake and FooBarConfigVersion files
file(RELATIVE_PATH REL_INCLUDE_DIR "${PACKAGE_INSTALL_CMAKE_DIR}"
"${PACKAGE_INSTALL_INC_DIR}")
# file(RELATIVE_PATH REL_INCLUDE_DIR "${INSTALL_CMAKE_DIR}"
# "${INSTALL_INC_DIR}")
# ... for the build tree
set(CONF_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/src" "${PROJECT_BINARY_DIR}")
configure_file(uLibConfig.cmake.in
"${PROJECT_BINARY_DIR}/uLibConfig.cmake" @ONLY)
#set(CONF_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/src" "${PROJECT_BINARY_DIR}")
#configure_file(uLibConfig.cmake.in
# "${PROJECT_BINARY_DIR}/uLibConfig.cmake" @ONLY)
# ... for the install tree
set(CONF_INCLUDE_DIRS "\${ULIB_CMAKE_DIR}/${REL_INCLUDE_DIR}")
configure_file(uLibConfig.cmake.in
"${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/uLibConfig.cmake" @ONLY)
# [ removed for the configure_config_file ]
# configure_file(uLibConfig.cmake.in
# "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/uLibConfig.cmake"
# @ONLY)
# ... for both
configure_file(uLibConfigVersion.cmake.in
"${PROJECT_BINARY_DIR}/uLibConfigVersion.cmake" @ONLY)
"${PROJECT_BINARY_DIR}/uLibConfigVersion.cmake" @ONLY)
install(FILES "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/uLibConfig.cmake"
# from CMake 3.x configure file shall be created using a dedicated function
# see: https://cmake.org/cmake/help/latest/module/CMakePackageConfigHelpers.html
#
include(CMakePackageConfigHelpers)
configure_package_config_file(uLibConfig.cmake.in
"${PROJECT_BINARY_DIR}/uLibConfig.cmake"
INSTALL_DESTINATION ${INSTALL_CMAKE_DIR}
PATH_VARS
INSTALL_LIB_DIR
INSTALL_INC_DIR
INSTALL_BIN_DIR
INSTALL_CMAKE_DIR
INSTALL_ETC_DIR
INSTALL_DATA_DIR
ULIB_SOURCE_DIR
ULIB_SHARED_LIBRARIES
# NO_SET_AND_CHECK_MACRO
# NO_CHECK_REQUIRED_COMPONENTS_MACRO
)
install(FILES "${PROJECT_BINARY_DIR}/uLibConfig.cmake"
"${PROJECT_BINARY_DIR}/uLibConfigVersion.cmake"
"${PROJECT_SOURCE_DIR}/CMake/FindReadLine.cmake"
"${PROJECT_SOURCE_DIR}/CMake/FindROOT.cmake"
"${PROJECT_SOURCE_DIR}/CMake/FindROOTv6.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibCommon.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibConfigHeader.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibDebugMacro.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibFindDependencies.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibGenerateDoc.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibGenerateRMake.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibGenerateRPMS.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibMacros.cmake"
"${PROJECT_SOURCE_DIR}/CMake/uLibTargetMacros.cmake"
DESTINATION "${PACKAGE_INSTALL_CMAKE_DIR}"
DESTINATION "${INSTALL_CMAKE_DIR}"
COMPONENT dev)
# this is a special target file for the build tree
# it is used also to identify if we are using a build direcory
# to link a project against uLib. see: uLibConfig.cmake ( IF )
export (TARGETS ${ULIB_SHARED_LIBRARIES}
FILE "${PROJECT_BINARY_DIR}/uLibTargets-build.cmake"
# NAMESPACE "uLib::"
)
# Install the export set for use with the install-tree
install(EXPORT "${PROJECT_NAME}Targets" DESTINATION
"${PACKAGE_INSTALL_CMAKE_DIR}" COMPONENT dev)
install(FILES ${PROJECT_SOURCE_DIR}/ulib.h DESTINATION ${PACKAGE_INSTALL_INC_DIR})
# TODO clean also subdirectories
add_custom_target(clean-cmake-files
COMMAND ${CMAKE_COMMAND} -P ${ULIB_CMAKE_DIR}/clean-all.cmake
)
install(EXPORT "uLibTargets"
FILE "uLibTargets.cmake"
DESTINATION "${INSTALL_CMAKE_DIR}"
COMPONENT dev)

View File

@@ -1,41 +1,27 @@
set(HEADERS
Archives.h
Array.h
Debug.h
Export.h
Function.h
Macros.h
Mpl.h
Object.h
ObjectProps.h
Options.h
Serializable.h
Signal.h
Singleton.h
SmartPointer.h
StaticInterface.h
StringReader.h
Types.h
Uuid.h
Timer.h
)
set(HEADERS Options.h
StaticInterface.h)
set(SOURCES Options.cpp)
set(LIBRARIES ${Boost_PROGRAM_OPTIONS_LIBRARY})
set(libname ${PACKAGE_LIBPREFIX}Core)
set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Core PARENT_SCOPE)
add_library(${libname} SHARED ${SOURCES})
set_target_properties(${libname} PROPERTIES
VERSION ${PROJECT_VERSION}
SOVERSION ${PROJECT_SOVERSION})
target_link_libraries(${libname} ${LIBRARIES})
install(TARGETS ${libname}
EXPORT "${PROJECT_NAME}Targets"
RUNTIME DESTINATION ${INSTALL_BIN_DIR} COMPONENT bin
LIBRARY DESTINATION ${INSTALL_LIB_DIR} COMPONENT lib)
install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Core)
SET(SOURCES
Archives.cpp
Object.cpp
Options.cpp
Serializable.cpp
Signal.cpp
Uuid.cpp
)
set(LIBRARIES
${Boost_SERIALIZATION_LIBRARY}
${Boost_SIGNALS_LIBRARY}
${Boost_PROGRAM_OPTIONS_LIBRARY}
${ROOT_LIBRARIES}
)
uLib_add_shared_library(${uLib-module})
add_subdirectory(testing)

View File

@@ -31,6 +31,9 @@
#include <boost/program_options.hpp>
#include <boost/property_tree/ptree.hpp>
#include <boost/property_tree/ini_parser.hpp>
//class boost::program_options::error_with_option_name;
//template<> boost::program_options::typed_value<int> boost::program_options::value<int>();
@@ -74,6 +77,23 @@ void Options::parse_config_file(const char *fname)
}
}
void Options::save_config_file(const char *fname) {
std::ofstream os;
os.open(fname);
using boost::property_tree::ptree;
ptree root;
std::cout << m_configuration << "\n";
std::cout << m_global << "\n";
write_ini( std::cout, root );
}
bool Options::count(const char *str) const
{
return (m_vm.count(str));

View File

@@ -160,6 +160,8 @@ public:
void parse_config_file(const char *fname);
void save_config_file(const char *fname);
template <typename T>
static inline boost::program_options::typed_value<T>* value(T *v, T dvalue) {
boost::program_options::typed_value<T> *r = boost::program_options::value<T>(v);

View File

@@ -1,37 +1,7 @@
#set(HEADERS
# DetectorChamber.h
# ExperimentFitEvent.h
# GeantEvent.h
# HitMC.h
# MuonScatter.h
# MuonEvent.h
# MuonError.h
# ChamberHitEvent.h
# Hit.h
# LinearFit.h
# Solid.h
# Matter.h
# Scene.h
#)
#set(SOURCES
# Solid.cpp
# Scene.cpp
#)
#set(LIBRARIES
# ${Boost_SERIALIZATION_LIBRARY}
# ${Boost_SIGNALS_LIBRARY}
# ${Boost_PROGRAM_OPTIONS_LIBRARY}
# ${Eigen_LIBRARY}
# ${Geant4_LIBRARIES}
# ${ROOT_LIBRARIES}
# ${PACKAGE_LIBPREFIX}Core
# ${PACKAGE_LIBPREFIX}Math
#)
set(HEADERS MuonScatter.h MuonError.h MuonEvent.h)
uLib_add_shared_library(${uLib-module})
add_subdirectory(testing)
set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Detectors PARENT_SCOPE)
install(FILES ${HEADERS}
DESTINATION ${INSTALL_INC_DIR}/Detectors)

View File

@@ -27,6 +27,8 @@
#ifndef U_MATH_BITCODE_H
#define U_MATH_BITCODE_H
#include <iostream>
#include <boost/static_assert.hpp>
#include <boost/type_traits.hpp>
#include <boost/mpl/vector_c.hpp>
@@ -34,6 +36,7 @@
#include <Math/Dense.h>
namespace uLib {

View File

@@ -1,53 +1,60 @@
# HEADERS
set(HEADERS
ContainerBox.h
Dense.h
Geometry.h
Transform.h
StructuredData.h
StructuredGrid.h
VoxImage.h
VoxRaytracer.h
Utils.h
VoxImageFilter.h
VoxImageFilter.hpp
VoxImageFilterLinear.hpp
VoxImageFilterMedian.hpp
VoxImageFilterABTrim.hpp
VoxImageFilterBilateral.hpp
VoxImageFilterThreshold.hpp
VoxImageFilter2ndStat.hpp
VoxImageFilterCustom.hpp
Accumulator.h
TriangleMesh.h
BitCode.h
Structured2DGrid.h
Structured4DGrid.h
)
set(HEADERS ContainerBox.h
Dense.h
Geometry.h
Transform.h
StructuredData.h
StructuredGrid.h
VoxImage.h
VoxRaytracer.h
Utils.h
VoxImageFilter.h
VoxImageFilter.hpp
VoxImageFilterLinear.hpp
VoxImageFilterMedian.hpp
VoxImageFilterABTrim.hpp
VoxImageFilterBilateral.hpp
VoxImageFilterThreshold.hpp
VoxImageFilter2ndStat.hpp
VoxImageFilterCustom.hpp
Accumulator.h
TriangleMesh.h
BitCode.h
Structured2DGrid.h
Structured4DGrid.h)
set(SOURCES VoxRaytracer.cpp
StructuredData.cpp
StructuredGrid.cpp
VoxImage.cpp
TriangleMesh.cpp
Dense.cpp
Structured2DGrid.cpp
Structured4DGrid.cpp)
set(LIBRARIES ${Eigen_LIBRARY}
${ROOT_LIBRARIES}
${VTK_LIBRARIES})
set(libname ${PACKAGE_LIBPREFIX}Math)
set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Math PARENT_SCOPE)
add_library(${libname} SHARED ${SOURCES})
set_target_properties(${libname} PROPERTIES
VERSION ${PROJECT_VERSION}
SOVERSION ${PROJECT_SOVERSION})
target_link_libraries(${libname} ${LIBRARIES})
# SOURCES
set(SOURCES
VoxRaytracer.cpp
StructuredData.cpp
StructuredGrid.cpp
VoxImage.cpp
TriangleMesh.cpp
Dense.cpp
Structured2DGrid.cpp
Structured4DGrid.cpp
)
install(TARGETS ${libname}
EXPORT "${PROJECT_NAME}Targets"
RUNTIME DESTINATION ${INSTALL_BIN_DIR} COMPONENT bin
LIBRARY DESTINATION ${INSTALL_LIB_DIR} COMPONENT lib)
set(LIBRARIES
${Boost_SERIALIZATION_LIBRARY}
${Boost_SIGNALS_LIBRARY}
${Boost_PROGRAM_OPTIONS_LIBRARY}
${Eigen_LIBRARY}
${ROOT_LIBRARIES}
${PACKAGE_LIBPREFIX}Core
)
install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Math)
# TESTING
# include(uLibTargetMacros)
# add_subdirectory(testing)
uLib_add_shared_library(${uLib-module})
add_subdirectory(testing)

View File

@@ -139,7 +139,6 @@ typedef Eigen::Vector4f Vector4f;
////////////////////////////////////////////////////////////////////////////////
// Vector String interaction ///////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////

View File

@@ -110,6 +110,17 @@ public:
inline void Rotate(const Matrix3f &m) { this->m_T.rotate(m); }
inline void Rotate(const float angle, Vector3f axis)
{
axis.normalize(); // prehaps not necessary ( see eigens )
Eigen::AngleAxisf ax(angle,axis);
this->m_T.rotate(Eigen::Quaternion<float>(ax));
}
inline void Rotate(const Vector3f euler_axis) {
float angle = euler_axis.norm();
Rotate(angle,euler_axis);
}
inline void PreRotate(const Matrix3f &m) { this->m_T.prerotate(m); }

View File

@@ -30,6 +30,13 @@
#include "VoxImage.h"
#include <vtkSmartPointer.h>
#include <vtkImageData.h>
#include <vtkXMLImageDataReader.h>
#include <vtkXMLImageDataWriter.h>
#include <vtkStringArray.h>
#include <vtkInformation.h>
#include <vtkInformationStringKey.h>
namespace uLib {
@@ -83,7 +90,103 @@ void Abstract::VoxImage::ExportToVtk (const char *file, bool density_type)
printf("%s vtk file saved\n",file);
}
int Abstract::VoxImage::ImportFromVtk(const char *file)
void Abstract::VoxImage::ExportToVti (const char *file, bool density_type, bool compressed)
{
Abstract::VoxImage *voxels = this;
vtkSmartPointer<vtkImageData> image = vtkSmartPointer<vtkImageData>::New();
image->SetDimensions(voxels->GetDims()(0), voxels->GetDims()(1), voxels->GetDims()(2));
image->SetSpacing(voxels->GetSpacing()(0), voxels->GetSpacing()(1), voxels->GetSpacing()(2));
image->SetOrigin(voxels->GetPosition()(0), voxels->GetPosition()(1), voxels->GetPosition()(2));
image->AllocateScalars(VTK_FLOAT, 1);
float norm;
if (density_type) {
norm = 1;
} else norm = 1.E6;
int nx = voxels->GetDims()(0);
int ny = voxels->GetDims()(1);
int nz = voxels->GetDims()(2);
size_t npoints = nx*ny*nz;
float *scalar = static_cast<float*>(image->GetScalarPointer());
StructuredData unwrap(*voxels);
unwrap.SetDataOrder(StructuredData::XYZ); // move to XYZ order (VTK)
for (size_t i = 0; i < npoints; i++) {
Vector3i idx = unwrap.UnMap(i);
scalar[i] = static_cast<float>(voxels->GetValue(idx) * norm);
}
// Create a custom string key
static vtkInformationStringKey* ConfigNote =
vtkInformationStringKey::MakeKey("cmt.config", "Config");
// Attach metadata
vtkInformation *info = image->GetInformation();
info->Set(ConfigNote,
"This image was generated with uLib\n"
"-----------------------------------\n"
"Author: Andrea Rigoni\n"
"Version: 0.1\n"
"Date: 2025\n"
);
// std::cout << info->Get(ConfigNote) << std::endl;
vtkSmartPointer<vtkXMLImageDataWriter> writer = vtkSmartPointer<vtkXMLImageDataWriter>::New();
writer->SetFileName(file);
writer->SetInputData(image);
if(compressed) {
writer->SetDataModeToBinary();
writer->SetCompressorTypeToZLib();
}
writer->Write();
}
int Abstract::VoxImage::ImportFromVti(const char *file, bool density_type) {
vtkSmartPointer<vtkXMLImageDataReader> reader = vtkSmartPointer<vtkXMLImageDataReader>::New();
reader->SetFileName(file);
reader->Update();
vtkImageData *image = reader->GetOutput();
if(!image) return false;
Abstract::VoxImage *voxels = this;
int nx = image->GetDimensions()[0];
int ny = image->GetDimensions()[1];
int nz = image->GetDimensions()[2];
voxels->SetDims(Vector3i(nx,ny,nz));
voxels->SetSpacing(Vector3f(image->GetSpacing()[0],image->GetSpacing()[1],image->GetSpacing()[2]));
voxels->SetPosition(Vector3f(image->GetOrigin()[0],image->GetOrigin()[1],image->GetOrigin()[2]));
float norm;
if (density_type) {
norm = 1;
} else norm = 1.E6;
size_t npoints = nx*ny*nz;
float *scalar = static_cast<float*>(image->GetScalarPointer());
StructuredData wrap(*voxels);
wrap.SetDataOrder(StructuredData::XYZ);
for (size_t i = 0; i < npoints; i++) {
Vector3i idx = wrap.UnMap(i);
voxels->SetValue(idx, scalar[i] / norm);
}
return true;
}
int Abstract::VoxImage::ImportFromVtk(const char *file, bool density_type)
{
FILE * vtk_file = fopen(file, "r");
if (!vtk_file) return false;
@@ -115,14 +218,18 @@ int Abstract::VoxImage::ImportFromVtk(const char *file)
this->SetSpacing(Vector3f(sx,sy,sz));
this->SetPosition(Vector3f(ox,oy,oz));
float norm;
if (density_type) {
norm = 1;
} else norm = 1.E6;
for (int k = 0; k < dz; ++k) {
for (int j = 0; j < dy; ++j) {
for (int i = 0; i < dx; ++i) {
Vector3i idx(i, j, k);
float tmp_val;
fscanf(vtk_file, "%f", &tmp_val);
//this->SetValue(idx,fabs(tmp_val)*1E-6);
this->SetValue(idx,tmp_val*1E-6);
this->SetValue(idx,tmp_val / norm);
}
}
}

View File

@@ -56,8 +56,18 @@ public:
virtual void SetDims(const Vector3i &size) = 0;
void ExportToVtk(const char *file, bool density_type = 0);
// use this function to export to VTK binary format
void ExportToVti (const char *file, bool density_type = 0, bool compressed = 0);
// this function has been deprecated in favor of ExportToVti
// but it is kept for backward compatibility and because it
// does not depend on vtk library
void ExportToVtkXml(const char *file, bool density_type = 0);
int ImportFromVtk(const char *file);
int ImportFromVtk(const char *file, bool density_type = 0);
int ImportFromVti(const char *file, bool density_type = 0);
protected:

View File

@@ -28,11 +28,12 @@
#ifndef VOXIMAGEFILTERCUSTOM_HPP
#define VOXIMAGEFILTERCUSTOM_HPP
#include "Core/Macros.h"
#include <Math/Dense.h>
#include "Math/VoxImage.h"
#include "VoxImageFilter.h"
#define likely(expr) __builtin_expect(!!(expr), 1)
////////////////////////////////////////////////////////////////////////////////
///// VOXIMAGE FILTER CUSTOM /////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////

View File

@@ -24,12 +24,12 @@
//////////////////////////////////////////////////////////////////////////////*/
#include <iostream>
#include "VoxRaytracer.h"
#include "Utils.h"
#include "Core/Macros.h"
#define unlikely(expr) __builtin_expect(!!(expr), 0)
inline float fast_sign(float f) { return 1 - 2 * (f < 0); }

View File

@@ -19,4 +19,4 @@ set(LIBRARIES
${PACKAGE_LIBPREFIX}Math
)
uLib_add_tests(${uLib-module})
uLib_add_tests(Math)

View File

@@ -92,6 +92,20 @@ int main() {
imgR.ExportToVtk("./read_and_saved.vtk");
}
{
VoxImage<TestVoxel> img(Vector3i(4,4,4));
img.InitVoxels({0,0});
for (int i=0; i<4; i++) {
for (int j=0; j<4; j++) {
for (int k=0; k<4; k++) {
img[Vector3i(i,j,k)] = {i+j+k,0};
}
}
}
img.ExportToVti("./vti_saved.vti",0,1);
// img.ImportFromVtkXml("./test_vox_image.vti");
}
{
VoxImage<TestVoxel> img1(Vector3i(5,5,5));

View File

@@ -1,55 +1,65 @@
set(HEADERS
TestTObject.h
RootMathDense.h
RootMuonScatter.h
RootHitRaw.h
muBlastHit.h
muBlastMCTrack.h
muCastorMCTrack.h
muCastorHit.h
muCastorInfo.h
)
set(HEADERS RootMathDense.h
RootMuonScatter.h
RootHitRaw.h
muCastorMCTrack.h
muCastorHit.h
muCastorInfo.h
muCastorSkinHit.h
muCastorPrimaryVertex.h
muCastorMuDetDIGI.h
SkinDetectorWriter.h)
set(DICTIONARY_HEADERS
TestTObject.h
RootMathDense.h
RootMuonScatter.h
RootHitRaw.h
muBlastHit.h
muBlastMCTrack.h
muCastorMCTrack.h
muCastorHit.h
muCastorInfo.h
)
set(SOURCES ${HEADERS} RootMuonScatter.cpp
muCastorMCTrack.cpp
muCastorHit.cpp
muCastorInfo.cpp
muCastorSkinHit.cpp
muCastorPrimaryVertex.cpp
muCastorMuDetDIGI.cpp
SkinDetectorWriter.cpp)
SET(SOURCES
TestTObject.cpp
RootMuonScatter.cpp
muBlastHit.cpp
muBlastMCTrack.cpp
muCastorMCTrack.cpp
muCastorHit.cpp
muCastorInfo.cpp
)
set(DICTIONARY_HEADERS muCastorMCTrack.h
muCastorHit.h
muCastorInfo.h
muCastorSkinHit.h
muCastorPrimaryVertex.h
muCastorMuDetDIGI.h
SkinDetectorWriter.h)
set(LIBRARIES
# ${Boost_SERIALIZATION_LIBRARY}
# ${Boost_SIGNALS_LIBRARY}
# ${Boost_PROGRAM_OPTIONS_LIBRARY}
${ROOT_LIBRARIES}
${PACKAGE_LIBPREFIX}Core
${PACKAGE_LIBPREFIX}Math
)
set(LIBRARIES ${ROOT_LIBRARIES}
${PACKAGE_LIBPREFIX}Math)
include(FindROOTv6)
root_generate_dictionary(uLibRootDict ${DICTIONARY_HEADERS} LINKDEF Linkdef.h)
set_source_files_properties(uLibRootDict.cxx PROPERTIES GENERATED TRUE)
set_source_files_properties(uLibRootDict.h PROPERTIES GENERATED TRUE)
list(APPEND SOURCES uLibRootDict.cxx)
set(rDictName ${PACKAGE_LIBPREFIX}RootDict)
root_generate_dictionary(${rDictName} ${DICTIONARY_HEADERS}
LINKDEF Linkdef.h)
set_source_files_properties(${rDictName}.cxx
PROPERTIES GENERATED TRUE)
set_source_files_properties(${rDictName}.h
PROPERTIES GENERATED TRUE)
list(APPEND SOURCES ${rDictName}.cxx)
# TODO use a custom target linked to root_generate_dictionary
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/uLibRootDict_rdict.pcm
DESTINATION ${PACKAGE_INSTALL_LIB_DIR})
set(R_ARTIFACTS ${CMAKE_CURRENT_BINARY_DIR}/lib${rDictName}_rdict.pcm
${CMAKE_CURRENT_BINARY_DIR}/lib${rDictName}.rootmap)
install(FILES ${R_ARTIFACTS}
DESTINATION ${INSTALL_LIB_DIR})
set(libname ${PACKAGE_LIBPREFIX}Root)
set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Root PARENT_SCOPE)
add_library(${libname} SHARED ${SOURCES})
set_target_properties(${libname} PROPERTIES
VERSION ${PROJECT_VERSION}
SOVERSION ${PROJECT_SOVERSION}
CXX_STANDARD 17)
target_link_libraries(${libname} ${LIBRARIES})
install(TARGETS ${libname}
EXPORT "${PROJECT_NAME}Targets"
RUNTIME DESTINATION ${INSTALL_BIN_DIR} COMPONENT bin
LIBRARY DESTINATION ${INSTALL_LIB_DIR} COMPONENT lib)
install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Root)
uLib_add_shared_library(${uLib-module})
add_subdirectory(testing)

View File

@@ -74,11 +74,13 @@ using namespace ROOT::Mutom;
#pragma link C++ function HitRaw::Tdc() const;
#pragma link C++ function HitRaw::Ch() const;
#pragma link C++ class muBlastMCTrack+;
#pragma link C++ class muBlastHit+;
#pragma link C++ class muCastorMCTrack+;
#pragma link C++ class muCastorHit+;
#pragma link C++ class muCastorInfo+;
#pragma link C++ class muCastorSkinHit+;
#pragma link C++ class muCastorPrimaryVertex+;
#pragma link C++ class muCastorMuDetDIGI+;
#pragma link C++ class SkinDetectorWriter+;
#endif // __CINT__

View File

@@ -0,0 +1,47 @@
#include "SkinDetectorWriter.h"
#include "muCastorSkinHit.h"
#include "TVector3.h"
SkinDetectorWriter::SkinDetectorWriter(string filename) :
t_file(nullptr),
t_tree(nullptr),
t_buffer(nullptr),
i_status(0)
{
t_file = new TFile(filename.c_str(), "RECREATE");
t_tree = new TTree("muCastorMC", "muCastorMC");
t_buffer = new TClonesArray("muCastorSkinHit");
t_tree->Branch("CastorSkinHits", "TClonesArray", t_buffer, 32000, 99);
if (t_file->IsZombie()) i_status = 1;
}
SkinDetectorWriter::~SkinDetectorWriter()
{}
void SkinDetectorWriter::add(int detID, float p_x, float p_y, float p_z,
float m_x, float m_y, float m_z)
{
TClonesArray& ref = *t_buffer;
int size = ref.GetEntriesFast();
muCastorSkinHit* new_hit = new(ref[size]) muCastorSkinHit();
new_hit->SetDetID(detID);
new_hit->SetPdgCode(13);
new_hit->SetMotherID(-1);
new_hit->SetPos (TVector3(p_x, p_y, p_z));
new_hit->SetMom (TVector3(m_x, m_y, m_z));
}
void SkinDetectorWriter::write()
{
if (t_tree->Fill() < 0) i_status = 2;
t_buffer->Delete(); // or t_buffer->Clear() ??
}
void SkinDetectorWriter::close()
{
if (t_tree->Write() == 0) i_status = 3;
t_file->Close();
}

View File

@@ -0,0 +1,32 @@
#ifndef SkinDetectorWriter_h
#define SkinDetectorWriter_h
#include <string>
#include "TFile.h"
#include "TTree.h"
#include "TClonesArray.h"
using std::string;
class SkinDetectorWriter
{
public:
SkinDetectorWriter(string filename);
virtual ~SkinDetectorWriter();
void add(int detID, float p_x, float p_y, float p_z, float m_x, float m_y, float m_z);
int status() { return i_status; }
void write();
void close();
private:
TFile* t_file;
TTree* t_tree;
TClonesArray* t_buffer;
int i_status;
};
#endif //SkinDetectorWriter_h

View File

@@ -9,6 +9,7 @@
// Martin Subieta martin.subieta@ing.unibs.it
//########################################
#include <iostream>
#include <vector>
#include "TObject.h"
#include "TParticle.h"

View File

@@ -9,6 +9,7 @@
// Martin Subieta martin.subieta@ing.unibs.it
//########################################
#include <iostream>
#include "vector"
#include "TObject.h"
#include "TParticle.h"

View File

@@ -0,0 +1,41 @@
/// \file muCastorMuDetDIGI.cxx
/// \brief Implementation of the muCastorMuDetDIGI class
// This class build the DIGI for the scintillator detectors
/// \author G. Bonomi, M. Subieta - INFN
#include <iostream>
#include "muCastorMuDetDIGI.h"
/// \cond CLASSIMP
ClassImp(muCastorMuDetDIGI)
/// \endcond
using namespace std;
//_____________________________________________________________________________
muCastorMuDetDIGI::muCastorMuDetDIGI() :
fDetID(-1),
fLayID(-1),
fTubID(-1),
fDistMC(0.),
fDriftMC(0.),
fDist(0.),
fDrift(0.),
fEnergy(0.)
{}
//_____________________________________________________________________________
muCastorMuDetDIGI::~muCastorMuDetDIGI()
{}
//_____________________________________________________________________________
void muCastorMuDetDIGI::Print(const Option_t* /*opt*/) const
{
cout << " DetID: " << fDetID
<< " LayID: " << fLayID
<< " TubID: " << fTubID
<< " energy deposit (keV): " << fEnergy
<< endl;
}

View File

@@ -0,0 +1,75 @@
#ifndef muCastor_MuDetDIGI_H
#define muCastor_MuDetDIGI_H
/// \file muCastorMuDetDIGI.h
/// \brief Definition of the muCastorMuDetDIGI class
///
/// \authors G. Bonomi, M. Subieta - INFN
#include <TObject.h>
class muCastorMuDetDIGI : public TObject
{
public:
muCastorMuDetDIGI();
virtual ~muCastorMuDetDIGI();
// -------> PUBLIC FUNCTIONS
virtual void Print(const Option_t* option = "") const;
// -------> SET METHODS
/// Set Det ID (Detector module)
void SetDetID(Int_t id) { fDetID = id; };
/// Set Layer ID (Layer [0,5])
void SetLayID(Int_t id) { fLayID = id; };
/// Set Tube ID (Tube inside each layer)
void SetTubID(Int_t id) { fTubID = id; };
void SetDistMC (Double_t v) { fDistMC = v; };
void SetDriftMC (Double_t v) { fDriftMC= v; };
void SetDist (Double_t v) { fDist = v; };
void SetDrift (Double_t v) { fDrift = v; };
// Set energy
void SetEnergy(Double_t e) { fEnergy = e; };
// -------> GET METHODS
/// \return The Module number
Int_t GetDetID() { return fDetID; };
/// \return The Layer number
Int_t GetLayID() { return fLayID; };
/// \return The Tube number
Int_t GetTubID() { return fTubID; };
Double_t GetDistMC() { return fDistMC; };
Double_t GetDriftMC() { return fDriftMC; };
Double_t GetDist() { return fDist; };
Double_t GetDrift() { return fDrift; };
/// \return Get energy
Double_t GetEnergy() { return fEnergy; };
// -------> PRIVATE VARIABLES
private:
Int_t fDetID; // Detector module ID
Int_t fLayID; // Detector layer ID
Int_t fTubID; // Layer tube ID
Double_t fDistMC; // Minimum distance of particle tracks to the wire
Double_t fDriftMC; // Minimum drift time to the wire
Double_t fDist; // Minimum distance of particle tracks to the wire (with smearing)
Double_t fDrift; // Minimum drift time to the wire (with smearing)
Double_t fEnergy; // Energy released in the element
ClassDef(muCastorMuDetDIGI,1) //muCastorMuDetDIGI
};
#endif //muCastorMuDetDIGI_H

View File

@@ -0,0 +1,47 @@
#include <iostream>
#include <limits>
#include "muCastorPrimaryVertex.h"
/// \cond CLASSIMP
ClassImp(muCastorPrimaryVertex)
/// \endcond
using namespace std;
//_____________________________________________________________________________
muCastorPrimaryVertex::muCastorPrimaryVertex() {
/// Default constructor
Reset();
}
//_____________________________________________________________________________
muCastorPrimaryVertex::~muCastorPrimaryVertex()
{
/// Destructor
}
//_____________________________________________________________________________
void muCastorPrimaryVertex::Reset()
{
fPdgCode = 0;
fVx = std::numeric_limits<double>::quiet_NaN();
fVy = std::numeric_limits<double>::quiet_NaN();
fVz = std::numeric_limits<double>::quiet_NaN();
fPx = std::numeric_limits<double>::quiet_NaN();
fPy = std::numeric_limits<double>::quiet_NaN();
fPz = std::numeric_limits<double>::quiet_NaN();
fE = std::numeric_limits<double>::quiet_NaN();
}
//_____________________________________________________________________________
void muCastorPrimaryVertex::Print(const Option_t* /*opt*/) const
{
/// Printing
cout << " Primary particle PDG Code " << fPdgCode << endl;
cout << " Vertex: (" << fVx << ", " << fVy << ", " << fVz << ") cm" << endl;
cout << " Mom: (" << fPx << ", " << fPy << ", " << fPz << ") MeV/c" << endl;
}

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@@ -0,0 +1,53 @@
#ifndef muCastor_PVTX_H
#define muCastor_PVTX_H
/// \brief Definition of the muCastorPrimaryVertex class
///
/// \authors G. Bonomi (04/02/2020)
#include <TObject.h>
class muCastorPrimaryVertex : public TObject
{
public:
muCastorPrimaryVertex();
virtual ~muCastorPrimaryVertex();
// -------> PUBLIC FUNCTIONS
virtual void Print(const Option_t* option = "") const;
// -------> SET METHODS
void SetPdgCode(Int_t code) { fPdgCode = code; };
void SetVx(Double_t Vx) { fVx = Vx; };
void SetVy(Double_t Vy) { fVy = Vy; };
void SetVz(Double_t Vz) { fVz = Vz; };
void SetPx(Double_t Px) { fPx = Px; };
void SetPy(Double_t Py) { fPy = Py; };
void SetPz(Double_t Pz) { fPz = Pz; };
void SetE(Double_t E) { fE = E; };
void Reset();
private:
// -------> PRIVATE VARIABLES
Int_t fPdgCode; // PDG code of the particle
Double_t fVx; // x of production vertex
Double_t fVy; // y of production vertex
Double_t fVz; // z of production vertex
Double_t fPx; // x component of momentum
Double_t fPy; // y component of momentum
Double_t fPz; // z component of momentum
Double_t fE; // Energy
ClassDef(muCastorPrimaryVertex,1) //muCastorPrimaryVertex
};
#endif //muCastor_PVTX_H

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@@ -0,0 +1,43 @@
//----------------------------------------------------------
// Class : CastorSkinHit
// Date: October 2020
// Author: Germano Bonomi germano.bonomi@unibs.it
//----------------------------------------------------------
#include <iostream>
#include "muCastorSkinHit.h"
/// \cond CLASSIMP
ClassImp(muCastorSkinHit)
/// \endcond
using namespace std;
//_____________________________________________________________________________
muCastorSkinHit::muCastorSkinHit() :
fDetID(-1),
fPdgCode(-1),
fMotherID(-1),
fMomX(0.),
fMomY(0.),
fMomZ(0.),
fPosX(0.),
fPosY(0.),
fPosZ(0.)
{}
//_____________________________________________________________________________
muCastorSkinHit::~muCastorSkinHit()
{}
//_____________________________________________________________________________
void muCastorSkinHit::Print(const Option_t* /*opt*/) const
{
cout << " detID: " << fDetID
<< " position (cm): ("
<< fPosX << ", " << fPosY << ", " << fPosZ << ")"
<< " momentum (MeV/c): ("
<< fMomX << ", " << fMomY << ", " << fMomZ << ")"
<< endl;
}

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@@ -0,0 +1,52 @@
//----------------------------------------------------------
// Class : CastorSkinHit
// Date: October 2020
// Author: Germano Bonomi germano.bonomi@unibs.it
//----------------------------------------------------------
#ifndef muCastor_SKINHIT_H
#define muCastor_SKINHIT_H
#include <TObject.h>
#include <TVector3.h>
class muCastorSkinHit : public TObject
{
public:
muCastorSkinHit();
virtual ~muCastorSkinHit();
// methods
virtual void Print(const Option_t* option = "") const;
// set methods
void SetDetID(Int_t id) { fDetID = id; };
void SetPdgCode(Int_t pdg) { fPdgCode = pdg; };
void SetMotherID(Int_t mid) { fMotherID = mid; };
void SetMom(TVector3 xyz) { fMomX = xyz.X(); fMomY = xyz.Y(); fMomZ = xyz.Z(); };
void SetPos(TVector3 xyz) { fPosX = xyz.X(); fPosY = xyz.Y(); fPosZ = xyz.Z(); };
Int_t GetDetID() { return fDetID; }
Int_t GetPdgCode() { return fPdgCode; }
Int_t GetMotherID() { return fMotherID; }
TVector3 GetMom() { return TVector3(fMomX, fMomY, fMomZ); }
TVector3 GetPos() { return TVector3(fPosX, fPosY, fPosZ); }
private:
Int_t fDetID; // Detector module ID
Int_t fPdgCode; // Particle PDG Code
Int_t fMotherID; // Particle mother ID (-1 = primary, 0 = secondary, etc..)
Double_t fMomX; // Track momentum when releasing the hit (X)
Double_t fMomY; // Track momentum when releasing the hit (Y)
Double_t fMomZ; // Track momentum when releasing the hit (Z)
Double_t fPosX; // Hit coordinates (at the entrance of the detector) (X)
Double_t fPosY; // Hit coordinates (at the entrance of the detector) (Y)
Double_t fPosZ; // Hit coordinates (at the entrance of the detector) (Z)
ClassDef(muCastorSkinHit,1) //muCastorSkinHit
};
#endif //muCastort_SKINHIT_H

View File

@@ -1,37 +1,38 @@
set(HEADERS
uLibVtkInterface.h
uLibVtkViewer.h
vtkContainerBox.h
vtkMuonScatter.h
vtkStructuredGrid.h
vtkVoxRaytracerRepresentation.h
vtkVoxImage.h
# vtkHLineRepresentation.h
# vtkTriangleMesh.h
)
set(HEADERS uLibVtkInterface.h
uLibVtkViewer.h
vtkContainerBox.h
vtkMuonScatter.h
vtkStructuredGrid.h
vtkVoxRaytracerRepresentation.h
vtkVoxImage.h)
SET(SOURCES
uLibVtkInterface.cxx
uLibVtkViewer.cpp
vtkContainerBox.cpp
vtkMuonScatter.cxx
vtkStructuredGrid.cpp
vtkVoxRaytracerRepresentation.cpp
vtkVoxImage.cpp
)
set(SOURCES uLibVtkInterface.cxx
uLibVtkViewer.cpp
vtkContainerBox.cpp
vtkMuonScatter.cxx
vtkStructuredGrid.cpp
vtkVoxRaytracerRepresentation.cpp
vtkVoxImage.cpp)
set(LIBRARIES
${Boost_SERIALIZATION_LIBRARY}
${Boost_SIGNALS_LIBRARY}
${Boost_PROGRAM_OPTIONS_LIBRARY}
${Eigen_LIBRARY}
${ROOT_LIBRARIES}
${Geant4_LIBRARIES}
${VTK_LIBRARIES}
${PACKAGE_LIBPREFIX}Core
${PACKAGE_LIBPREFIX}Math
)
set(LIBRARIES ${Eigen_LIBRARY}
${ROOT_LIBRARIES}
${VTK_LIBRARIES}
${PACKAGE_LIBPREFIX}Math)
uLib_add_shared_library(${uLib-module})
set(libname ${PACKAGE_LIBPREFIX}Vtk)
set(ULIB_SHARED_LIBRARIES ${ULIB_SHARED_LIBRARIES} ${libname} PARENT_SCOPE)
set(ULIB_SELECTED_MODULES ${ULIB_SELECTED_MODULES} Vtk PARENT_SCOPE)
add_library(${libname} SHARED ${SOURCES})
set_target_properties(${libname} PROPERTIES
VERSION ${PROJECT_VERSION}
SOVERSION ${PROJECT_SOVERSION})
target_link_libraries(${libname} ${LIBRARIES})
install(TARGETS ${libname}
EXPORT "${PROJECT_NAME}Targets"
RUNTIME DESTINATION ${INSTALL_BIN_DIR} COMPONENT bin
LIBRARY DESTINATION ${INSTALL_LIB_DIR} COMPONENT lib)
install(FILES ${HEADERS} DESTINATION ${INSTALL_INC_DIR}/Vtk)
add_subdirectory(testing)

View File

@@ -65,6 +65,7 @@ vtkContainerBox::~vtkContainerBox()
vtkPolyData *vtkContainerBox::GetPolyData() const
{
// TODO
return NULL;
}
void vtkContainerBox::InstallPipe()

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@@ -1,35 +0,0 @@
/*//////////////////////////////////////////////////////////////////////////////
// CMT Cosmic Muon Tomography project //////////////////////////////////////////
////////////////////////////////////////////////////////////////////////////////
Copyright (c) 2014, Universita' degli Studi di Padova, INFN sez. di Padova
All rights reserved
Authors: Andrea Rigoni Garola < andrea.rigoni@pd.infn.it >
------------------------------------------------------------------
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 3.0 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library.
//////////////////////////////////////////////////////////////////////////////*/
#include "Object.h"
int main()
{
return 0;
}

View File

@@ -1,19 +1,92 @@
# - Config file for the FooBar package
# - Config file for the ULib package
# It defines the following variables
# FOOBAR_INCLUDE_DIRS - include directories for FooBar
# FOOBAR_LIBRARIES - libraries to link against
# FOOBAR_EXECUTABLE - the bar executable
# ULIB_INCLUDE_DIRS - include directories for ULib
# ULIB_LIBRARIES - libraries to link against
# ULIB_EXECUTABLE - the bar executable
set(ULIB_VERSION @PROJECT_VERSION@)
@PACKAGE_INIT@
# Defines the include directories for the header files
# PACKAGE_INCLUDE_INSTALL_DIR is replaced by configure_package_config_file
# with the correct path for the installation.
set(ULIB_INCLUDE_DIRS "${PACKAGE_INCLUDE_INSTALL_DIR}")
# Compute paths
get_filename_component(ULIB_CMAKE_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH)
set(ULIB_INCLUDE_DIRS "@CONF_INCLUDE_DIRS@")
# Our library dependencies (contains definitions for IMPORTED targets)
# if(NOT TARGET foo AND NOT FooBar_BINARY_DIR)
include("${ULIB_CMAKE_DIR}/uLibTargets.cmake")
# endif()
# Search for the directory of exported build targets
set(uLib_BUILD_TARGETS_FILE
"${ULIB_CMAKE_DIR}/uLibTargets-build.cmake"
)
# Search for the directory of installed targets
set(uLib_INSTALL_TARGETS_FILE
"${ULIB_CMAKE_DIR}/uLibTargets.cmake"
)
# We use a logic based on the presence of the build target file
# to determine if we are in a local build.
if(EXISTS "${uLib_BUILD_TARGETS_FILE}")
message(STATUS " ++ Using uLib build targets")
include("${uLib_BUILD_TARGETS_FILE}")
set_and_check(ULIB_INCLUDE_DIRS "@ULIB_SOURCE_DIR@/src")
set_and_check(ULIB_LIBRARY_DIRS "${ULIB_CMAKE_DIR}")
set(ULIB_BUILD_DIR ${ULIB_CMAKE_DIR})
# Target that builds uLib inside its build directory
add_custom_target(uLib_dependency_target
COMMAND echo " --------------------------------- "
COMMAND echo " - Building uLib as a dependency - "
COMMAND echo " --------------------------------- "
COMMAND echo ""
COMMAND ${CMAKE_COMMAND} --build ${ULIB_BUILD_DIR}
COMMAND echo ""
WORKING_DIRECTORY ${ULIB_BUILD_DIR}
)
add_library(uLib_dependency INTERFACE)
add_dependencies(uLib_dependency uLib_dependency_target)
link_libraries(uLib_dependency)
else()
message(STATUS " ++ Using uLib installed targets")
include("${uLib_INSTALL_TARGETS_FILE}")
set_and_check(ULIB_INCLUDE_DIRS "@PACKAGE_INSTALL_INC_DIR@")
set(ULIB_SYSCONFIG_DIR "@PACKAGE_INSTALL_ETC_DIR@")
set_and_check(ULIB_CMAKE_DIR "@PACKAGE_INSTALL_CMAKE_DIR@")
set_and_check(ULIB_LIBRARY_DIRS "@PACKAGE_INSTALL_LIB_DIR@")
endif()
# --- Add required packages from uLib ---
# TODO: this should be selected if components are active
#
set(Boost_USE_STATIC_LIBS OFF)
set(Boost_USE_MULTITHREADED ON)
set(Boost_USE_STATIC_RUNTIME OFF)
find_package(Boost 1.45.0 COMPONENTS program_options filesystem REQUIRED)
include_directories(${Boost_INCLUDE_DIRS})
link_libraries(${Boost_LIBRARIES})
find_package(Eigen3 CONFIG REQUIRED)
include(${EIGEN3_USE_FILE})
find_package(ROOT CONFIG REQUIRED)
include(${ROOT_USE_FILE})
find_package(VTK REQUIRED)
# include(${VTK_USE_FILE})
link_directories("${ULIB_LIBRARY_DIRS}")
set(ULIB_LIBRARIES "@ULIB_SHARED_LIBRARIES@")
check_required_components(uLib)
# Set the variable to indicate that the package has been found.
set(uLib_FOUND TRUE)
# These are IMPORTED targets created by FooBarTargets.cmake
# set(FOOBAR_LIBRARIES foo)
# set(FOOBAR_EXECUTABLE bar)
set(ULIB_LIBRARIES @ULIB_SHARED_LIBRARIES@)